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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    39001 7rqc:1E (2.5) BS03 MG ? GO:0003735 ... Q5SHN8 35165455
    39002 7rqc:1E (2.5) BS04 MG ? GO:0003735 ... Q5SHN8 35165455
    39003 7rqc:1E (2.5) BS05 MG ? GO:0003735 ... Q5SHN8 35165455
    39004 7rqc:1F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 35165455
    39005 7rqc:1F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 35165455
    39006 7rqc:1F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 35165455
    39007 7rqc:1F (2.5) BS05 MG ? GO:0003735 ... Q5SHN9 35165455
    39008 7rqc:1F (2.5) BS06 MG ? GO:0003735 ... Q5SHN9 35165455
    39009 7rqc:1F (2.5) BS07 MG ? GO:0003735 ... Q5SHN9 35165455
    39010 7rqc:1F (2.5) BS08 MG ? GO:0003735 ... Q5SHN9 35165455
    39011 7rqc:1F (2.5) BS09 MG ? GO:0003735 ... Q5SHN9 35165455
    39012 7rqc:1F (2.5) BS10 MG ? GO:0003735 ... Q5SHN9 35165455
    39013 7rqc:1F (2.5) BS11 MG ? GO:0003735 ... Q5SHN9 35165455
    39014 7rqc:1G (2.5) BS03 MG ? GO:0000049 ... Q5SHQ0 35165455
    39015 7rqc:1G (2.5) BS04 MG ? GO:0000049 ... Q5SHQ0 35165455
    39016 7rqc:1N (2.5) BS02 MG ? GO:0003729 ... P60488 35165455
    39017 7rqc:1N (2.5) BS03 MG ? GO:0003729 ... P60488 35165455
    39018 7rqc:1O (2.5) BS03 MG ? GO:0003735 ... Q5SHP8 35165455
    39019 7rqc:1P (2.5) BS02 MG ? GO:0003735 ... Q5SHQ7 35165455
    39020 7rqc:1P (2.5) BS03 MG ? GO:0003735 ... Q5SHQ7 35165455
    39021 7rqc:1Q (2.5) BS03 MG ? GO:0000049 ... P60489 35165455
    39022 7rqc:1Q (2.5) BS04 MG ? GO:0000049 ... P60489 35165455
    39023 7rqc:1Q (2.5) BS05 MG ? GO:0000049 ... P60489 35165455
    39024 7rqc:1Q (2.5) BS06 MG ? GO:0000049 ... P60489 35165455
    39025 7rqc:1Q (2.5) BS07 MG ? GO:0000049 ... P60489 35165455
    39026 7rqc:1R (2.5) BS02 MG ? GO:0003735 ... Q9Z9H5 35165455
    39027 7rqc:1R (2.5) BS03 MG ? GO:0003735 ... Q9Z9H5 35165455
    39028 7rqc:1R (2.5) BS04 MG ? GO:0003735 ... Q9Z9H5 35165455
    39029 7rqc:1R (2.5) BS05 MG ? GO:0003735 ... Q9Z9H5 35165455
    39030 7rqc:1U (2.5) BS02 MG ? GO:0000027 ... P60491 35165455
    39031 7rqc:1U (2.5) BS03 MG ? GO:0000027 ... P60491 35165455
    39032 7rqc:1U (2.5) BS04 MG ? GO:0000027 ... P60491 35165455
    39033 7rqc:1U (2.5) BS05 MG ? GO:0000027 ... P60491 35165455
    39034 7rqc:1U (2.5) BS06 MG ? GO:0000027 ... P60491 35165455
    39035 7rqc:1V (2.5) BS02 MG ? GO:0003723 ... P60492 35165455
    39036 7rqc:1V (2.5) BS03 MG ? GO:0003723 ... P60492 35165455
    39037 7rqc:1V (2.5) BS04 MG ? GO:0003723 ... P60492 35165455
    39038 7rqc:1V (2.5) BS05 MG ? GO:0003723 ... P60492 35165455
    39039 7rqc:1W (2.5) BS02 MG ? GO:0003735 ... Q5SHP3 35165455
    39040 7rqc:1b (2.5) BS02 MG ? GO:0003735 ... P80371 35165455
    39041 7rqc:1e (2.5) BS02 MG ? GO:0003723 ... Q5SHQ5 35165455
    39042 7rqc:1f (2.5) BS02 MG ? GO:0003735 ... Q5SLP8 35165455
    39043 7rqc:1k (2.5) BS02 MG ? GO:0003735 ... P80376 35165455
    39044 7rqc:1l (2.5) BS02 MG ? GO:0000049 ... Q5SHN3 35165455
    39045 7rqc:1m (2.5) BS03 MG ? GO:0000049 ... P80377 35165455
    39046 7rqc:1t (2.5) BS02 MG ? GO:0003723 ... P80380 35165455
    39047 7rqc:1y (2.5) BS02 MG ? GO:0005515 ... P0AD49 35165455
    39048 7rqc:20 (2.5) BS03 MG ? GO:0003735 ... P60493 35165455
    39049 7rqc:25 (2.5) BS02 MG ? GO:0003735 ... P80339 35165455
    39050 7rqc:25 (2.5) BS03 MG ? GO:0003735 ... P80339 35165455
    39051 7rqc:27 (2.5) BS02 MG ? GO:0003735 ... P80340 35165455
    39052 7rqc:27 (2.5) BS03 MG ? GO:0003735 ... P80340 35165455
    39053 7rqc:2D (2.5) BS03 MG ? GO:0002181 ... P60405 35165455
    39054 7rqc:2D (2.5) BS04 MG ? GO:0002181 ... P60405 35165455
    39055 7rqc:2D (2.5) BS05 MG ? GO:0002181 ... P60405 35165455
    39056 7rqc:2D (2.5) BS06 MG ? GO:0002181 ... P60405 35165455
    39057 7rqc:2D (2.5) BS07 MG ? GO:0002181 ... P60405 35165455
    39058 7rqc:2D (2.5) BS08 MG ? GO:0002181 ... P60405 35165455
    39059 7rqc:2D (2.5) BS09 MG ? GO:0002181 ... P60405 35165455
    39060 7rqc:2E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 35165455
    39061 7rqc:2E (2.5) BS03 MG ? GO:0003735 ... Q5SHN8 35165455
    39062 7rqc:2F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 35165455
    39063 7rqc:2F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 35165455
    39064 7rqc:2F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 35165455
    39065 7rqc:2F (2.5) BS05 MG ? GO:0003735 ... Q5SHN9 35165455
    39066 7rqc:2G (2.5) BS03 MG ? GO:0000049 ... Q5SHQ0 35165455
    39067 7rqc:2G (2.5) BS04 MG ? GO:0000049 ... Q5SHQ0 35165455
    39068 7rqc:2Q (2.5) BS03 MG ? GO:0000049 ... P60489 35165455
    39069 7rqc:2U (2.5) BS02 MG ? GO:0000027 ... P60491 35165455
    39070 7rqc:2V (2.5) BS02 MG ? GO:0003723 ... P60492 35165455
    39071 7rqc:2V (2.5) BS03 MG ? GO:0003723 ... P60492 35165455
    39072 7rqc:2W (2.5) BS02 MG ? GO:0003735 ... Q5SHP3 35165455
    39073 7rqc:2f (2.5) BS02 MG ? GO:0003735 ... Q5SLP8 35165455
    39074 7rqc:2k (2.5) BS02 MG ? GO:0003735 ... P80376 35165455
    39075 7rqc:2l (2.5) BS02 MG ? GO:0000049 ... Q5SHN3 35165455
    39076 7rqc:2t (2.5) BS02 MG ? GO:0003723 ... P80380 35165455
    39077 7rqd:10 (2.5) BS03 MG ? GO:0003735 ... P60493 35165455
    39078 7rqd:10 (2.5) BS04 MG ? GO:0003735 ... P60493 35165455
    39079 7rqd:13 (2.5) BS03 MG ? GO:0003735 ... Q5SHQ6 35165455
    39080 7rqd:13 (2.5) BS04 MG ? GO:0003735 ... Q5SHQ6 35165455
    39081 7rqd:15 (2.5) BS02 MG ? GO:0003735 ... P80339 35165455
    39082 7rqd:15 (2.5) BS03 MG ? GO:0003735 ... P80339 35165455
    39083 7rqd:17 (2.5) BS02 MG ? GO:0003735 ... P80340 35165455
    39084 7rqd:17 (2.5) BS03 MG ? GO:0003735 ... P80340 35165455
    39085 7rqd:18 (2.5) BS02 MG ? GO:0003735 ... Q5SKU1 35165455
    39086 7rqd:1D (2.5) BS02 MG ? GO:0002181 ... P60405 35165455
    39087 7rqd:1D (2.5) BS03 MG ? GO:0002181 ... P60405 35165455
    39088 7rqd:1D (2.5) BS04 MG ? GO:0002181 ... P60405 35165455
    39089 7rqd:1D (2.5) BS05 MG ? GO:0002181 ... P60405 35165455
    39090 7rqd:1D (2.5) BS06 MG ? GO:0002181 ... P60405 35165455
    39091 7rqd:1D (2.5) BS07 MG ? GO:0002181 ... P60405 35165455
    39092 7rqd:1D (2.5) BS08 MG ? GO:0002181 ... P60405 35165455
    39093 7rqd:1D (2.5) BS09 MG ? GO:0002181 ... P60405 35165455
    39094 7rqd:1D (2.5) BS10 MG ? GO:0002181 ... P60405 35165455
    39095 7rqd:1D (2.5) BS11 MG ? GO:0002181 ... P60405 35165455
    39096 7rqd:1D (2.5) BS12 MG ? GO:0002181 ... P60405 35165455
    39097 7rqd:1D (2.5) BS13 MG ? GO:0002181 ... P60405 35165455
    39098 7rqd:1E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 35165455
    39099 7rqd:1E (2.5) BS03 MG ? GO:0003735 ... Q5SHN8 35165455
    39100 7rqd:1E (2.5) BS04 MG ? GO:0003735 ... Q5SHN8 35165455
    39101 7rqd:1E (2.5) BS05 MG ? GO:0003735 ... Q5SHN8 35165455
    39102 7rqd:1E (2.5) BS06 MG ? GO:0003735 ... Q5SHN8 35165455
    39103 7rqd:1F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 35165455
    39104 7rqd:1F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 35165455
    39105 7rqd:1F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 35165455
    39106 7rqd:1F (2.5) BS05 MG ? GO:0003735 ... Q5SHN9 35165455
    39107 7rqd:1F (2.5) BS06 MG ? GO:0003735 ... Q5SHN9 35165455
    39108 7rqd:1F (2.5) BS07 MG ? GO:0003735 ... Q5SHN9 35165455
    39109 7rqd:1F (2.5) BS08 MG ? GO:0003735 ... Q5SHN9 35165455
    39110 7rqd:1F (2.5) BS09 MG ? GO:0003735 ... Q5SHN9 35165455
    39111 7rqd:1F (2.5) BS10 MG ? GO:0003735 ... Q5SHN9 35165455
    39112 7rqd:1F (2.5) BS11 MG ? GO:0003735 ... Q5SHN9 35165455
    39113 7rqd:1F (2.5) BS12 MG ? GO:0003735 ... Q5SHN9 35165455
    39114 7rqd:1F (2.5) BS13 MG ? GO:0003735 ... Q5SHN9 35165455
    39115 7rqd:1G (2.5) BS03 MG ? GO:0000049 ... Q5SHQ0 35165455
    39116 7rqd:1N (2.5) BS02 MG ? GO:0003729 ... P60488 35165455
    39117 7rqd:1N (2.5) BS03 MG ? GO:0003729 ... P60488 35165455
    39118 7rqd:1P (2.5) BS02 MG ? GO:0003735 ... Q5SHQ7 35165455
    39119 7rqd:1P (2.5) BS03 MG ? GO:0003735 ... Q5SHQ7 35165455
    39120 7rqd:1P (2.5) BS04 MG ? GO:0003735 ... Q5SHQ7 35165455
    39121 7rqd:1Q (2.5) BS03 MG ? GO:0000049 ... P60489 35165455
    39122 7rqd:1Q (2.5) BS04 MG ? GO:0000049 ... P60489 35165455
    39123 7rqd:1Q (2.5) BS05 MG ? GO:0000049 ... P60489 35165455
    39124 7rqd:1R (2.5) BS02 MG ? GO:0003735 ... Q9Z9H5 35165455
    39125 7rqd:1R (2.5) BS03 MG ? GO:0003735 ... Q9Z9H5 35165455
    39126 7rqd:1U (2.5) BS02 MG ? GO:0000027 ... P60491 35165455
    39127 7rqd:1U (2.5) BS03 MG ? GO:0000027 ... P60491 35165455
    39128 7rqd:1U (2.5) BS04 MG ? GO:0000027 ... P60491 35165455
    39129 7rqd:1U (2.5) BS05 MG ? GO:0000027 ... P60491 35165455
    39130 7rqd:1V (2.5) BS02 MG ? GO:0003723 ... P60492 35165455
    39131 7rqd:1V (2.5) BS03 MG ? GO:0003723 ... P60492 35165455
    39132 7rqd:1V (2.5) BS04 MG ? GO:0003723 ... P60492 35165455
    39133 7rqd:1W (2.5) BS02 MG ? GO:0003735 ... Q5SHP3 35165455
    39134 7rqd:1W (2.5) BS03 MG ? GO:0003735 ... Q5SHP3 35165455
    39135 7rqd:1d (2.5) BS02 MG ? GO:0003723 ... P80373 35165455
    39136 7rqd:1k (2.5) BS02 MG ? GO:0003735 ... P80376 35165455
    39137 7rqd:1l (2.5) BS02 MG ? GO:0000049 ... Q5SHN3 35165455
    39138 7rqd:1m (2.5) BS02 MG ? GO:0000049 ... P80377 35165455
    39139 7rqd:1m (2.5) BS03 MG ? GO:0000049 ... P80377 35165455
    39140 7rqd:1n (2.5) BS02 MG ? GO:0003735 ... P0DOY6 35165455
    39141 7rqd:1t (2.5) BS02 MG ? GO:0003723 ... P80380 35165455
    39142 7rqd:1y (2.5) BS02 MG ? GO:0005515 ... P0AD49 35165455
    39143 7rqd:20 (2.5) BS03 MG ? GO:0003735 ... P60493 35165455
    39144 7rqd:23 (2.5) BS03 MG ? GO:0003735 ... Q5SHQ6 35165455
    39145 7rqd:25 (2.5) BS02 MG ? GO:0003735 ... P80339 35165455
    39146 7rqd:27 (2.5) BS02 MG ? GO:0003735 ... P80340 35165455
    39147 7rqd:2D (2.5) BS02 MG ? GO:0002181 ... P60405 35165455
    39148 7rqd:2D (2.5) BS03 MG ? GO:0002181 ... P60405 35165455
    39149 7rqd:2D (2.5) BS04 MG ? GO:0002181 ... P60405 35165455
    39150 7rqd:2D (2.5) BS05 MG ? GO:0002181 ... P60405 35165455
    39151 7rqd:2D (2.5) BS06 MG ? GO:0002181 ... P60405 35165455
    39152 7rqd:2E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 35165455
    39153 7rqd:2E (2.5) BS03 MG ? GO:0003735 ... Q5SHN8 35165455
    39154 7rqd:2E (2.5) BS04 MG ? GO:0003735 ... Q5SHN8 35165455
    39155 7rqd:2F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 35165455
    39156 7rqd:2F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 35165455
    39157 7rqd:2F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 35165455
    39158 7rqd:2F (2.5) BS05 MG ? GO:0003735 ... Q5SHN9 35165455
    39159 7rqd:2G (2.5) BS03 MG ? GO:0000049 ... Q5SHQ0 35165455
    39160 7rqd:2G (2.5) BS04 MG ? GO:0000049 ... Q5SHQ0 35165455
    39161 7rqd:2Q (2.5) BS03 MG ? GO:0000049 ... P60489 35165455
    39162 7rqd:2R (2.5) BS02 MG ? GO:0003735 ... Q9Z9H5 35165455
    39163 7rqd:2U (2.5) BS02 MG ? GO:0000027 ... P60491 35165455
    39164 7rqd:2V (2.5) BS02 MG ? GO:0003723 ... P60492 35165455
    39165 7rqd:2V (2.5) BS03 MG ? GO:0003723 ... P60492 35165455
    39166 7rqd:2f (2.5) BS02 MG ? GO:0003735 ... Q5SLP8 35165455
    39167 7rqd:2j (2.5) BS02 MG ? GO:0000049 ... Q5SHN7 35165455
    39168 7rqd:2k (2.5) BS02 MG ? GO:0003735 ... P80376 35165455
    39169 7rqd:2l (2.5) BS02 MG ? GO:0000049 ... Q5SHN3 35165455
    39170 7rqe:10 (2.4) BS03 MG ? GO:0003735 ... P60493 35165455
    39171 7rqe:10 (2.4) BS04 MG ? GO:0003735 ... P60493 35165455
    39172 7rqe:10 (2.4) BS05 MG ? GO:0003735 ... P60493 35165455
    39173 7rqe:11 (2.4) BS02 MG ? GO:0003735 ... P60494 35165455
    39174 7rqe:13 (2.4) BS03 MG ? GO:0003735 ... Q5SHQ6 35165455
    39175 7rqe:13 (2.4) BS04 MG ? GO:0003735 ... Q5SHQ6 35165455
    39176 7rqe:13 (2.4) BS05 MG ? GO:0003735 ... Q5SHQ6 35165455
    39177 7rqe:15 (2.4) BS02 MG ? GO:0003735 ... P80339 35165455
    39178 7rqe:15 (2.4) BS03 MG ? GO:0003735 ... P80339 35165455
    39179 7rqe:15 (2.4) BS04 MG ? GO:0003735 ... P80339 35165455
    39180 7rqe:17 (2.4) BS02 MG ? GO:0003735 ... P80340 35165455
    39181 7rqe:17 (2.4) BS03 MG ? GO:0003735 ... P80340 35165455
    39182 7rqe:18 (2.4) BS02 MG ? GO:0003735 ... Q5SKU1 35165455
    39183 7rqe:18 (2.4) BS03 MG ? GO:0003735 ... Q5SKU1 35165455
    39184 7rqe:1D (2.4) BS03 MG ? GO:0002181 ... P60405 35165455
    39185 7rqe:1D (2.4) BS04 MG ? GO:0002181 ... P60405 35165455
    39186 7rqe:1D (2.4) BS05 MG ? GO:0002181 ... P60405 35165455
    39187 7rqe:1D (2.4) BS06 MG ? GO:0002181 ... P60405 35165455
    39188 7rqe:1D (2.4) BS07 MG ? GO:0002181 ... P60405 35165455
    39189 7rqe:1D (2.4) BS08 MG ? GO:0002181 ... P60405 35165455
    39190 7rqe:1D (2.4) BS09 MG ? GO:0002181 ... P60405 35165455
    39191 7rqe:1D (2.4) BS10 MG ? GO:0002181 ... P60405 35165455
    39192 7rqe:1D (2.4) BS11 MG ? GO:0002181 ... P60405 35165455
    39193 7rqe:1D (2.4) BS12 MG ? GO:0002181 ... P60405 35165455
    39194 7rqe:1D (2.4) BS13 MG ? GO:0002181 ... P60405 35165455
    39195 7rqe:1E (2.4) BS02 MG ? GO:0003735 ... Q5SHN8 35165455
    39196 7rqe:1E (2.4) BS03 MG ? GO:0003735 ... Q5SHN8 35165455
    39197 7rqe:1E (2.4) BS04 MG ? GO:0003735 ... Q5SHN8 35165455
    39198 7rqe:1E (2.4) BS05 MG ? GO:0003735 ... Q5SHN8 35165455
    39199 7rqe:1F (2.4) BS02 MG ? GO:0003735 ... Q5SHN9 35165455
    39200 7rqe:1F (2.4) BS03 MG ? GO:0003735 ... Q5SHN9 35165455
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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