Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    38801 7rqa:1F (2.4) BS06 MG ? GO:0003735 ... Q5SHN9 35165455
    38802 7rqa:1F (2.4) BS07 MG ? GO:0003735 ... Q5SHN9 35165455
    38803 7rqa:1F (2.4) BS08 MG ? GO:0003735 ... Q5SHN9 35165455
    38804 7rqa:1F (2.4) BS09 MG ? GO:0003735 ... Q5SHN9 35165455
    38805 7rqa:1F (2.4) BS10 MG ? GO:0003735 ... Q5SHN9 35165455
    38806 7rqa:1F (2.4) BS11 MG ? GO:0003735 ... Q5SHN9 35165455
    38807 7rqa:1F (2.4) BS12 MG ? GO:0003735 ... Q5SHN9 35165455
    38808 7rqa:1F (2.4) BS13 MG ? GO:0003735 ... Q5SHN9 35165455
    38809 7rqa:1F (2.4) BS14 MG ? GO:0003735 ... Q5SHN9 35165455
    38810 7rqa:1F (2.4) BS15 MG ? GO:0003735 ... Q5SHN9 35165455
    38811 7rqa:1F (2.4) BS16 MG ? GO:0003735 ... Q5SHN9 35165455
    38812 7rqa:1G (2.4) BS03 MG ? GO:0000049 ... Q5SHQ0 35165455
    38813 7rqa:1G (2.4) BS04 MG ? GO:0000049 ... Q5SHQ0 35165455
    38814 7rqa:1N (2.4) BS02 MG ? GO:0003729 ... P60488 35165455
    38815 7rqa:1N (2.4) BS03 MG ? GO:0003729 ... P60488 35165455
    38816 7rqa:1P (2.4) BS02 MG ? GO:0003735 ... Q5SHQ7 35165455
    38817 7rqa:1P (2.4) BS03 MG ? GO:0003735 ... Q5SHQ7 35165455
    38818 7rqa:1P (2.4) BS04 MG ? GO:0003735 ... Q5SHQ7 35165455
    38819 7rqa:1Q (2.4) BS03 MG ? GO:0000049 ... P60489 35165455
    38820 7rqa:1Q (2.4) BS04 MG ? GO:0000049 ... P60489 35165455
    38821 7rqa:1Q (2.4) BS05 MG ? GO:0000049 ... P60489 35165455
    38822 7rqa:1Q (2.4) BS06 MG ? GO:0000049 ... P60489 35165455
    38823 7rqa:1Q (2.4) BS07 MG ? GO:0000049 ... P60489 35165455
    38824 7rqa:1R (2.4) BS02 MG ? GO:0003735 ... Q9Z9H5 35165455
    38825 7rqa:1R (2.4) BS03 MG ? GO:0003735 ... Q9Z9H5 35165455
    38826 7rqa:1R (2.4) BS04 MG ? GO:0003735 ... Q9Z9H5 35165455
    38827 7rqa:1U (2.4) BS02 MG ? GO:0000027 ... P60491 35165455
    38828 7rqa:1U (2.4) BS03 MG ? GO:0000027 ... P60491 35165455
    38829 7rqa:1U (2.4) BS04 MG ? GO:0000027 ... P60491 35165455
    38830 7rqa:1U (2.4) BS05 MG ? GO:0000027 ... P60491 35165455
    38831 7rqa:1U (2.4) BS06 MG ? GO:0000027 ... P60491 35165455
    38832 7rqa:1V (2.4) BS02 MG ? GO:0003723 ... P60492 35165455
    38833 7rqa:1V (2.4) BS03 MG ? GO:0003723 ... P60492 35165455
    38834 7rqa:1V (2.4) BS04 MG ? GO:0003723 ... P60492 35165455
    38835 7rqa:1W (2.4) BS02 MG ? GO:0003735 ... Q5SHP3 35165455
    38836 7rqa:1b (2.4) BS02 MG ? GO:0003735 ... P80371 35165455
    38837 7rqa:1e (2.4) BS02 MG ? GO:0003723 ... Q5SHQ5 35165455
    38838 7rqa:1k (2.4) BS02 MG ? GO:0003735 ... P80376 35165455
    38839 7rqa:1l (2.4) BS02 MG ? GO:0000049 ... Q5SHN3 35165455
    38840 7rqa:1m (2.4) BS02 MG ? GO:0000049 ... P80377 35165455
    38841 7rqa:1n (2.4) BS02 MG ? GO:0003735 ... P0DOY6 35165455
    38842 7rqa:1n (2.4) BS03 MG ? GO:0003735 ... P0DOY6 35165455
    38843 7rqa:1t (2.4) BS02 MG ? GO:0003723 ... P80380 35165455
    38844 7rqa:1y (2.4) BS02 MG ? GO:0005515 ... P0AD49 35165455
    38845 7rqa:1y (2.4) BS03 MG ? GO:0005515 ... P0AD49 35165455
    38846 7rqa:20 (2.4) BS03 MG ? GO:0003735 ... P60493 35165455
    38847 7rqa:23 (2.4) BS03 MG ? GO:0003735 ... Q5SHQ6 35165455
    38848 7rqa:25 (2.4) BS02 MG ? GO:0003735 ... P80339 35165455
    38849 7rqa:26 (2.4) BS02 MG ? GO:0000049 ... P35871 35165455
    38850 7rqa:27 (2.4) BS02 MG ? GO:0003735 ... P80340 35165455
    38851 7rqa:27 (2.4) BS03 MG ? GO:0003735 ... P80340 35165455
    38852 7rqa:2D (2.4) BS03 MG ? GO:0002181 ... P60405 35165455
    38853 7rqa:2D (2.4) BS04 MG ? GO:0002181 ... P60405 35165455
    38854 7rqa:2D (2.4) BS05 MG ? GO:0002181 ... P60405 35165455
    38855 7rqa:2D (2.4) BS06 MG ? GO:0002181 ... P60405 35165455
    38856 7rqa:2D (2.4) BS07 MG ? GO:0002181 ... P60405 35165455
    38857 7rqa:2D (2.4) BS08 MG ? GO:0002181 ... P60405 35165455
    38858 7rqa:2D (2.4) BS09 MG ? GO:0002181 ... P60405 35165455
    38859 7rqa:2D (2.4) BS10 MG ? GO:0002181 ... P60405 35165455
    38860 7rqa:2D (2.4) BS11 MG ? GO:0002181 ... P60405 35165455
    38861 7rqa:2E (2.4) BS02 MG ? GO:0003735 ... Q5SHN8 35165455
    38862 7rqa:2F (2.4) BS02 MG ? GO:0003735 ... Q5SHN9 35165455
    38863 7rqa:2F (2.4) BS03 MG ? GO:0003735 ... Q5SHN9 35165455
    38864 7rqa:2F (2.4) BS04 MG ? GO:0003735 ... Q5SHN9 35165455
    38865 7rqa:2F (2.4) BS05 MG ? GO:0003735 ... Q5SHN9 35165455
    38866 7rqa:2G (2.4) BS03 MG ? GO:0000049 ... Q5SHQ0 35165455
    38867 7rqa:2Q (2.4) BS03 MG ? GO:0000049 ... P60489 35165455
    38868 7rqa:2U (2.4) BS02 MG ? GO:0000027 ... P60491 35165455
    38869 7rqa:2V (2.4) BS02 MG ? GO:0003723 ... P60492 35165455
    38870 7rqa:2V (2.4) BS03 MG ? GO:0003723 ... P60492 35165455
    38871 7rqa:2V (2.4) BS04 MG ? GO:0003723 ... P60492 35165455
    38872 7rqa:2W (2.4) BS02 MG ? GO:0003735 ... Q5SHP3 35165455
    38873 7rqa:2f (2.4) BS02 MG ? GO:0003735 ... Q5SLP8 35165455
    38874 7rqa:2k (2.4) BS02 MG ? GO:0003735 ... P80376 35165455
    38875 7rqb:10 (2.45) BS03 MG ? GO:0003735 ... P60493 35165455
    38876 7rqb:10 (2.45) BS04 MG ? GO:0003735 ... P60493 35165455
    38877 7rqb:10 (2.45) BS05 MG ? GO:0003735 ... P60493 35165455
    38878 7rqb:11 (2.45) BS02 MG ? GO:0003735 ... P60494 35165455
    38879 7rqb:13 (2.45) BS03 MG ? GO:0003735 ... Q5SHQ6 35165455
    38880 7rqb:13 (2.45) BS04 MG ? GO:0003735 ... Q5SHQ6 35165455
    38881 7rqb:13 (2.45) BS05 MG ? GO:0003735 ... Q5SHQ6 35165455
    38882 7rqb:15 (2.45) BS02 MG ? GO:0003735 ... P80339 35165455
    38883 7rqb:15 (2.45) BS03 MG ? GO:0003735 ... P80339 35165455
    38884 7rqb:15 (2.45) BS04 MG ? GO:0003735 ... P80339 35165455
    38885 7rqb:15 (2.45) BS05 MG ? GO:0003735 ... P80339 35165455
    38886 7rqb:17 (2.45) BS02 MG ? GO:0003735 ... P80340 35165455
    38887 7rqb:17 (2.45) BS03 MG ? GO:0003735 ... P80340 35165455
    38888 7rqb:18 (2.45) BS02 MG ? GO:0003735 ... Q5SKU1 35165455
    38889 7rqb:18 (2.45) BS03 MG ? GO:0003735 ... Q5SKU1 35165455
    38890 7rqb:1D (2.45) BS03 MG ? GO:0002181 ... P60405 35165455
    38891 7rqb:1D (2.45) BS04 MG ? GO:0002181 ... P60405 35165455
    38892 7rqb:1D (2.45) BS05 MG ? GO:0002181 ... P60405 35165455
    38893 7rqb:1D (2.45) BS06 MG ? GO:0002181 ... P60405 35165455
    38894 7rqb:1D (2.45) BS07 MG ? GO:0002181 ... P60405 35165455
    38895 7rqb:1D (2.45) BS08 MG ? GO:0002181 ... P60405 35165455
    38896 7rqb:1D (2.45) BS09 MG ? GO:0002181 ... P60405 35165455
    38897 7rqb:1D (2.45) BS10 MG ? GO:0002181 ... P60405 35165455
    38898 7rqb:1D (2.45) BS11 MG ? GO:0002181 ... P60405 35165455
    38899 7rqb:1D (2.45) BS12 MG ? GO:0002181 ... P60405 35165455
    38900 7rqb:1E (2.45) BS02 MG ? GO:0003735 ... Q5SHN8 35165455
    38901 7rqb:1E (2.45) BS03 MG ? GO:0003735 ... Q5SHN8 35165455
    38902 7rqb:1E (2.45) BS04 MG ? GO:0003735 ... Q5SHN8 35165455
    38903 7rqb:1E (2.45) BS05 MG ? GO:0003735 ... Q5SHN8 35165455
    38904 7rqb:1F (2.45) BS02 MG ? GO:0003735 ... Q5SHN9 35165455
    38905 7rqb:1F (2.45) BS03 MG ? GO:0003735 ... Q5SHN9 35165455
    38906 7rqb:1F (2.45) BS04 MG ? GO:0003735 ... Q5SHN9 35165455
    38907 7rqb:1F (2.45) BS05 MG ? GO:0003735 ... Q5SHN9 35165455
    38908 7rqb:1F (2.45) BS06 MG ? GO:0003735 ... Q5SHN9 35165455
    38909 7rqb:1F (2.45) BS07 MG ? GO:0003735 ... Q5SHN9 35165455
    38910 7rqb:1F (2.45) BS08 MG ? GO:0003735 ... Q5SHN9 35165455
    38911 7rqb:1F (2.45) BS09 MG ? GO:0003735 ... Q5SHN9 35165455
    38912 7rqb:1F (2.45) BS10 MG ? GO:0003735 ... Q5SHN9 35165455
    38913 7rqb:1F (2.45) BS11 MG ? GO:0003735 ... Q5SHN9 35165455
    38914 7rqb:1F (2.45) BS12 MG ? GO:0003735 ... Q5SHN9 35165455
    38915 7rqb:1F (2.45) BS13 MG ? GO:0003735 ... Q5SHN9 35165455
    38916 7rqb:1F (2.45) BS14 MG ? GO:0003735 ... Q5SHN9 35165455
    38917 7rqb:1G (2.45) BS03 MG ? GO:0000049 ... Q5SHQ0 35165455
    38918 7rqb:1G (2.45) BS04 MG ? GO:0000049 ... Q5SHQ0 35165455
    38919 7rqb:1N (2.45) BS02 MG ? GO:0003729 ... P60488 35165455
    38920 7rqb:1N (2.45) BS03 MG ? GO:0003729 ... P60488 35165455
    38921 7rqb:1P (2.45) BS02 MG ? GO:0003735 ... Q5SHQ7 35165455
    38922 7rqb:1Q (2.45) BS03 MG ? GO:0000049 ... P60489 35165455
    38923 7rqb:1Q (2.45) BS04 MG ? GO:0000049 ... P60489 35165455
    38924 7rqb:1Q (2.45) BS05 MG ? GO:0000049 ... P60489 35165455
    38925 7rqb:1Q (2.45) BS06 MG ? GO:0000049 ... P60489 35165455
    38926 7rqb:1R (2.45) BS02 MG ? GO:0003735 ... Q9Z9H5 35165455
    38927 7rqb:1R (2.45) BS03 MG ? GO:0003735 ... Q9Z9H5 35165455
    38928 7rqb:1U (2.45) BS02 MG ? GO:0000027 ... P60491 35165455
    38929 7rqb:1U (2.45) BS03 MG ? GO:0000027 ... P60491 35165455
    38930 7rqb:1U (2.45) BS04 MG ? GO:0000027 ... P60491 35165455
    38931 7rqb:1U (2.45) BS05 MG ? GO:0000027 ... P60491 35165455
    38932 7rqb:1U (2.45) BS06 MG ? GO:0000027 ... P60491 35165455
    38933 7rqb:1V (2.45) BS02 MG ? GO:0003723 ... P60492 35165455
    38934 7rqb:1V (2.45) BS03 MG ? GO:0003723 ... P60492 35165455
    38935 7rqb:1V (2.45) BS04 MG ? GO:0003723 ... P60492 35165455
    38936 7rqb:1W (2.45) BS02 MG ? GO:0003735 ... Q5SHP3 35165455
    38937 7rqb:1W (2.45) BS03 MG ? GO:0003735 ... Q5SHP3 35165455
    38938 7rqb:1d (2.45) BS02 MG ? GO:0003723 ... P80373 35165455
    38939 7rqb:1e (2.45) BS02 MG ? GO:0003723 ... Q5SHQ5 35165455
    38940 7rqb:1k (2.45) BS02 MG ? GO:0003735 ... P80376 35165455
    38941 7rqb:1l (2.45) BS02 MG ? GO:0000049 ... Q5SHN3 35165455
    38942 7rqb:1m (2.45) BS03 MG ? GO:0000049 ... P80377 35165455
    38943 7rqb:1t (2.45) BS02 MG ? GO:0003723 ... P80380 35165455
    38944 7rqb:1y (2.45) BS02 MG ? GO:0005515 ... P0AD49 35165455
    38945 7rqb:20 (2.45) BS03 MG ? GO:0003735 ... P60493 35165455
    38946 7rqb:25 (2.45) BS02 MG ? GO:0003735 ... P80339 35165455
    38947 7rqb:26 (2.45) BS02 MG ? GO:0000049 ... P35871 35165455
    38948 7rqb:27 (2.45) BS02 MG ? GO:0003735 ... P80340 35165455
    38949 7rqb:27 (2.45) BS03 MG ? GO:0003735 ... P80340 35165455
    38950 7rqb:27 (2.45) BS04 MG ? GO:0003735 ... P80340 35165455
    38951 7rqb:29 (2.45) BS02 MG ? GO:0003735 ... Q5SHR2 35165455
    38952 7rqb:2D (2.45) BS03 MG ? GO:0002181 ... P60405 35165455
    38953 7rqb:2D (2.45) BS04 MG ? GO:0002181 ... P60405 35165455
    38954 7rqb:2D (2.45) BS05 MG ? GO:0002181 ... P60405 35165455
    38955 7rqb:2D (2.45) BS06 MG ? GO:0002181 ... P60405 35165455
    38956 7rqb:2E (2.45) BS02 MG ? GO:0003735 ... Q5SHN8 35165455
    38957 7rqb:2E (2.45) BS03 MG ? GO:0003735 ... Q5SHN8 35165455
    38958 7rqb:2E (2.45) BS04 MG ? GO:0003735 ... Q5SHN8 35165455
    38959 7rqb:2F (2.45) BS02 MG ? GO:0003735 ... Q5SHN9 35165455
    38960 7rqb:2F (2.45) BS03 MG ? GO:0003735 ... Q5SHN9 35165455
    38961 7rqb:2F (2.45) BS04 MG ? GO:0003735 ... Q5SHN9 35165455
    38962 7rqb:2F (2.45) BS05 MG ? GO:0003735 ... Q5SHN9 35165455
    38963 7rqb:2Q (2.45) BS03 MG ? GO:0000049 ... P60489 35165455
    38964 7rqb:2Q (2.45) BS04 MG ? GO:0000049 ... P60489 35165455
    38965 7rqb:2R (2.45) BS02 MG ? GO:0003735 ... Q9Z9H5 35165455
    38966 7rqb:2U (2.45) BS02 MG ? GO:0000027 ... P60491 35165455
    38967 7rqb:2V (2.45) BS02 MG ? GO:0003723 ... P60492 35165455
    38968 7rqb:2V (2.45) BS03 MG ? GO:0003723 ... P60492 35165455
    38969 7rqb:2W (2.45) BS02 MG ? GO:0003735 ... Q5SHP3 35165455
    38970 7rqb:2W (2.45) BS03 MG ? GO:0003735 ... Q5SHP3 35165455
    38971 7rqb:2f (2.45) BS02 MG ? GO:0003735 ... Q5SLP8 35165455
    38972 7rqb:2k (2.45) BS02 MG ? GO:0003735 ... P80376 35165455
    38973 7rqb:2l (2.45) BS02 MG ? GO:0000049 ... Q5SHN3 35165455
    38974 7rqb:2t (2.45) BS02 MG ? GO:0003723 ... P80380 35165455
    38975 7rqc:10 (2.5) BS03 MG ? GO:0003735 ... P60493 35165455
    38976 7rqc:10 (2.5) BS04 MG ? GO:0003735 ... P60493 35165455
    38977 7rqc:10 (2.5) BS05 MG ? GO:0003735 ... P60493 35165455
    38978 7rqc:11 (2.5) BS02 MG ? GO:0003735 ... P60494 35165455
    38979 7rqc:13 (2.5) BS03 MG ? GO:0003735 ... Q5SHQ6 35165455
    38980 7rqc:13 (2.5) BS04 MG ? GO:0003735 ... Q5SHQ6 35165455
    38981 7rqc:15 (2.5) BS02 MG ? GO:0003735 ... P80339 35165455
    38982 7rqc:15 (2.5) BS03 MG ? GO:0003735 ... P80339 35165455
    38983 7rqc:15 (2.5) BS04 MG ? GO:0003735 ... P80339 35165455
    38984 7rqc:17 (2.5) BS02 MG ? GO:0003735 ... P80340 35165455
    38985 7rqc:17 (2.5) BS03 MG ? GO:0003735 ... P80340 35165455
    38986 7rqc:17 (2.5) BS04 MG ? GO:0003735 ... P80340 35165455
    38987 7rqc:18 (2.5) BS02 MG ? GO:0003735 ... Q5SKU1 35165455
    38988 7rqc:1D (2.5) BS02 MG ? GO:0002181 ... P60405 35165455
    38989 7rqc:1D (2.5) BS03 MG ? GO:0002181 ... P60405 35165455
    38990 7rqc:1D (2.5) BS04 MG ? GO:0002181 ... P60405 35165455
    38991 7rqc:1D (2.5) BS05 MG ? GO:0002181 ... P60405 35165455
    38992 7rqc:1D (2.5) BS06 MG ? GO:0002181 ... P60405 35165455
    38993 7rqc:1D (2.5) BS07 MG ? GO:0002181 ... P60405 35165455
    38994 7rqc:1D (2.5) BS08 MG ? GO:0002181 ... P60405 35165455
    38995 7rqc:1D (2.5) BS09 MG ? GO:0002181 ... P60405 35165455
    38996 7rqc:1D (2.5) BS10 MG ? GO:0002181 ... P60405 35165455
    38997 7rqc:1D (2.5) BS11 MG ? GO:0002181 ... P60405 35165455
    38998 7rqc:1D (2.5) BS12 MG ? GO:0002181 ... P60405 35165455
    38999 7rqc:1D (2.5) BS13 MG ? GO:0002181 ... P60405 35165455
    39000 7rqc:1E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 35165455
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218