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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    38601 7rq8:1V (2.5) BS05 MG ? GO:0003723 ... P60492 34707295
    38602 7rq8:1V (2.5) BS06 MG ? GO:0003723 ... P60492 34707295
    38603 7rq8:1V (2.5) BS07 MG ? GO:0003723 ... P60492 34707295
    38604 7rq8:1W (2.5) BS02 MG ? GO:0003735 ... Q5SHP3 34707295
    38605 7rq8:1W (2.5) BS03 MG ? GO:0003735 ... Q5SHP3 34707295
    38606 7rq8:1W (2.5) BS04 MG ? GO:0003735 ... Q5SHP3 34707295
    38607 7rq8:1W (2.5) BS05 MG ? GO:0003735 ... Q5SHP3 34707295
    38608 7rq8:1X (2.5) BS02 MG ? GO:0000027 ... Q5SHP0 34707295
    38609 7rq8:1X (2.5) BS03 MG ? GO:0000027 ... Q5SHP0 34707295
    38610 7rq8:1X (2.5) BS04 MG ? GO:0000027 ... Q5SHP0 34707295
    38611 7rq8:1X (2.5) BS05 MG ? GO:0000027 ... Q5SHP0 34707295
    38612 7rq8:1X (2.5) BS06 MG ? GO:0000027 ... Q5SHP0 34707295
    38613 7rq8:1Y (2.5) BS02 MG ? GO:0003723 ... Q5SHP9 34707295
    38614 7rq8:1b (2.5) BS02 MG ? GO:0003735 ... P80371 34707295
    38615 7rq8:1e (2.5) BS02 MG ? GO:0003723 ... Q5SHQ5 34707295
    38616 7rq8:1e (2.5) BS03 MG ? GO:0003723 ... Q5SHQ5 34707295
    38617 7rq8:1f (2.5) BS02 MG ? GO:0003735 ... Q5SLP8 34707295
    38618 7rq8:1k (2.5) BS02 MG ? GO:0003735 ... P80376 34707295
    38619 7rq8:1l (2.5) BS03 MG ? GO:0000049 ... Q5SHN3 34707295
    38620 7rq8:1m (2.5) BS04 MG ? GO:0000049 ... P80377 34707295
    38621 7rq8:1n (2.5) BS02 MG ? GO:0003735 ... P0DOY6 34707295
    38622 7rq8:1t (2.5) BS02 MG ? GO:0003723 ... P80380 34707295
    38623 7rq8:21 (2.5) BS02 MG ? GO:0003735 ... P60494 34707295
    38624 7rq8:23 (2.5) BS03 MG ? GO:0003735 ... Q5SHQ6 34707295
    38625 7rq8:25 (2.5) BS02 MG ? GO:0003735 ... P80339 34707295
    38626 7rq8:2D (2.5) BS03 MG ? GO:0002181 ... P60405 34707295
    38627 7rq8:2D (2.5) BS04 MG ? GO:0002181 ... P60405 34707295
    38628 7rq8:2D (2.5) BS05 MG ? GO:0002181 ... P60405 34707295
    38629 7rq8:2E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 34707295
    38630 7rq8:2F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 34707295
    38631 7rq8:2F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 34707295
    38632 7rq8:2F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 34707295
    38633 7rq8:2F (2.5) BS05 MG ? GO:0003735 ... Q5SHN9 34707295
    38634 7rq8:2Q (2.5) BS04 MG ? GO:0000049 ... P60489 34707295
    38635 7rq8:2T (2.5) BS03 MG ? GO:0003735 ... P60490 34707295
    38636 7rq8:2V (2.5) BS02 MG ? GO:0003723 ... P60492 34707295
    38637 7rq8:2W (2.5) BS02 MG ? GO:0003735 ... Q5SHP3 34707295
    38638 7rq8:2e (2.5) BS02 MG ? GO:0003723 ... Q5SHQ5 34707295
    38639 7rq8:2f (2.5) BS02 MG ? GO:0003735 ... Q5SLP8 34707295
    38640 7rq8:2k (2.5) BS02 MG ? GO:0003735 ... P80376 34707295
    38641 7rq8:2l (2.5) BS02 MG ? GO:0000049 ... Q5SHN3 34707295
    38642 7rq8:2l (2.5) BS03 MG ? GO:0000049 ... Q5SHN3 34707295
    38643 7rq8:2q (2.5) BS02 MG ? GO:0003735 ... P0DOY7 34707295
    38644 7rq8:2q (2.5) BS03 MG ? GO:0003735 ... P0DOY7 34707295
    38645 7rq8:2t (2.5) BS02 MG ? GO:0003723 ... P80380 34707295
    38646 7rq9:10 (2.6) BS03 MG ? GO:0003735 ... P60493 34707295
    38647 7rq9:10 (2.6) BS04 MG ? GO:0003735 ... P60493 34707295
    38648 7rq9:10 (2.6) BS05 MG ? GO:0003735 ... P60493 34707295
    38649 7rq9:11 (2.6) BS03 MG ? GO:0003735 ... P60494 34707295
    38650 7rq9:12 (2.6) BS02 MG ? GO:0003735 ... Q5SHP6 34707295
    38651 7rq9:13 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 34707295
    38652 7rq9:15 (2.6) BS02 MG ? GO:0003735 ... P80339 34707295
    38653 7rq9:16 (2.6) BS02 MG ? GO:0000049 ... P35871 34707295
    38654 7rq9:17 (2.6) BS02 MG ? GO:0003735 ... P80340 34707295
    38655 7rq9:17 (2.6) BS03 MG ? GO:0003735 ... P80340 34707295
    38656 7rq9:18 (2.6) BS02 MG ? GO:0003735 ... Q5SKU1 34707295
    38657 7rq9:18 (2.6) BS03 MG ? GO:0003735 ... Q5SKU1 34707295
    38658 7rq9:18 (2.6) BS04 MG ? GO:0003735 ... Q5SKU1 34707295
    38659 7rq9:18 (2.6) BS05 MG ? GO:0003735 ... Q5SKU1 34707295
    38660 7rq9:1D (2.6) BS03 MG ? GO:0002181 ... P60405 34707295
    38661 7rq9:1D (2.6) BS04 MG ? GO:0002181 ... P60405 34707295
    38662 7rq9:1D (2.6) BS05 MG ? GO:0002181 ... P60405 34707295
    38663 7rq9:1D (2.6) BS06 MG ? GO:0002181 ... P60405 34707295
    38664 7rq9:1D (2.6) BS07 MG ? GO:0002181 ... P60405 34707295
    38665 7rq9:1D (2.6) BS08 MG ? GO:0002181 ... P60405 34707295
    38666 7rq9:1D (2.6) BS09 MG ? GO:0002181 ... P60405 34707295
    38667 7rq9:1D (2.6) BS10 MG ? GO:0002181 ... P60405 34707295
    38668 7rq9:1D (2.6) BS11 MG ? GO:0002181 ... P60405 34707295
    38669 7rq9:1D (2.6) BS12 MG ? GO:0002181 ... P60405 34707295
    38670 7rq9:1D (2.6) BS13 MG ? GO:0002181 ... P60405 34707295
    38671 7rq9:1D (2.6) BS14 MG ? GO:0002181 ... P60405 34707295
    38672 7rq9:1D (2.6) BS15 MG ? GO:0002181 ... P60405 34707295
    38673 7rq9:1E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 34707295
    38674 7rq9:1E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 34707295
    38675 7rq9:1E (2.6) BS04 MG ? GO:0003735 ... Q5SHN8 34707295
    38676 7rq9:1E (2.6) BS05 MG ? GO:0003735 ... Q5SHN8 34707295
    38677 7rq9:1E (2.6) BS06 MG ? GO:0003735 ... Q5SHN8 34707295
    38678 7rq9:1F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 34707295
    38679 7rq9:1F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 34707295
    38680 7rq9:1F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 34707295
    38681 7rq9:1F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 34707295
    38682 7rq9:1F (2.6) BS06 MG ? GO:0003735 ... Q5SHN9 34707295
    38683 7rq9:1F (2.6) BS07 MG ? GO:0003735 ... Q5SHN9 34707295
    38684 7rq9:1F (2.6) BS08 MG ? GO:0003735 ... Q5SHN9 34707295
    38685 7rq9:1G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 34707295
    38686 7rq9:1G (2.6) BS05 MG ? GO:0000049 ... Q5SHQ0 34707295
    38687 7rq9:1N (2.6) BS02 MG ? GO:0003729 ... P60488 34707295
    38688 7rq9:1N (2.6) BS03 MG ? GO:0003729 ... P60488 34707295
    38689 7rq9:1N (2.6) BS04 MG ? GO:0003729 ... P60488 34707295
    38690 7rq9:1O (2.6) BS03 MG ? GO:0003735 ... Q5SHP8 34707295
    38691 7rq9:1O (2.6) BS04 MG ? GO:0003735 ... Q5SHP8 34707295
    38692 7rq9:1P (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 34707295
    38693 7rq9:1P (2.6) BS03 MG ? GO:0003735 ... Q5SHQ7 34707295
    38694 7rq9:1P (2.6) BS04 MG ? GO:0003735 ... Q5SHQ7 34707295
    38695 7rq9:1P (2.6) BS05 MG ? GO:0003735 ... Q5SHQ7 34707295
    38696 7rq9:1P (2.6) BS06 MG ? GO:0003735 ... Q5SHQ7 34707295
    38697 7rq9:1P (2.6) BS07 MG ? GO:0003735 ... Q5SHQ7 34707295
    38698 7rq9:1Q (2.6) BS04 MG ? GO:0000049 ... P60489 34707295
    38699 7rq9:1Q (2.6) BS05 MG ? GO:0000049 ... P60489 34707295
    38700 7rq9:1Q (2.6) BS06 MG ? GO:0000049 ... P60489 34707295
    38701 7rq9:1Q (2.6) BS07 MG ? GO:0000049 ... P60489 34707295
    38702 7rq9:1R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 34707295
    38703 7rq9:1R (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 34707295
    38704 7rq9:1R (2.6) BS04 MG ? GO:0003735 ... Q9Z9H5 34707295
    38705 7rq9:1S (2.6) BS03 MG ? GO:0003735 ... Q5SHQ4 34707295
    38706 7rq9:1S (2.6) BS04 MG ? GO:0003735 ... Q5SHQ4 34707295
    38707 7rq9:1U (2.6) BS02 MG ? GO:0000027 ... P60491 34707295
    38708 7rq9:1U (2.6) BS03 MG ? GO:0000027 ... P60491 34707295
    38709 7rq9:1U (2.6) BS04 MG ? GO:0000027 ... P60491 34707295
    38710 7rq9:1U (2.6) BS05 MG ? GO:0000027 ... P60491 34707295
    38711 7rq9:1U (2.6) BS06 MG ? GO:0000027 ... P60491 34707295
    38712 7rq9:1U (2.6) BS07 MG ? GO:0000027 ... P60491 34707295
    38713 7rq9:1V (2.6) BS02 MG ? GO:0003723 ... P60492 34707295
    38714 7rq9:1V (2.6) BS03 MG ? GO:0003723 ... P60492 34707295
    38715 7rq9:1V (2.6) BS04 MG ? GO:0003723 ... P60492 34707295
    38716 7rq9:1V (2.6) BS05 MG ? GO:0003723 ... P60492 34707295
    38717 7rq9:1V (2.6) BS06 MG ? GO:0003723 ... P60492 34707295
    38718 7rq9:1V (2.6) BS07 MG ? GO:0003723 ... P60492 34707295
    38719 7rq9:1W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 34707295
    38720 7rq9:1W (2.6) BS03 MG ? GO:0003735 ... Q5SHP3 34707295
    38721 7rq9:1W (2.6) BS04 MG ? GO:0003735 ... Q5SHP3 34707295
    38722 7rq9:1W (2.6) BS05 MG ? GO:0003735 ... Q5SHP3 34707295
    38723 7rq9:1W (2.6) BS06 MG ? GO:0003735 ... Q5SHP3 34707295
    38724 7rq9:1X (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 34707295
    38725 7rq9:1X (2.6) BS03 MG ? GO:0000027 ... Q5SHP0 34707295
    38726 7rq9:1X (2.6) BS04 MG ? GO:0000027 ... Q5SHP0 34707295
    38727 7rq9:1X (2.6) BS05 MG ? GO:0000027 ... Q5SHP0 34707295
    38728 7rq9:1X (2.6) BS06 MG ? GO:0000027 ... Q5SHP0 34707295
    38729 7rq9:1Y (2.6) BS02 MG ? GO:0003723 ... Q5SHP9 34707295
    38730 7rq9:1Z (2.6) BS03 MG ? GO:0003723 ... Q5SHZ1 34707295
    38731 7rq9:1e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 34707295
    38732 7rq9:1f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 34707295
    38733 7rq9:1k (2.6) BS02 MG ? GO:0003735 ... P80376 34707295
    38734 7rq9:1l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 34707295
    38735 7rq9:1m (2.6) BS04 MG ? GO:0000049 ... P80377 34707295
    38736 7rq9:1t (2.6) BS02 MG ? GO:0003723 ... P80380 34707295
    38737 7rq9:20 (2.6) BS04 MG ? GO:0003735 ... P60493 34707295
    38738 7rq9:23 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 34707295
    38739 7rq9:25 (2.6) BS02 MG ? GO:0003735 ... P80339 34707295
    38740 7rq9:27 (2.6) BS02 MG ? GO:0003735 ... P80340 34707295
    38741 7rq9:27 (2.6) BS03 MG ? GO:0003735 ... P80340 34707295
    38742 7rq9:28 (2.6) BS02 MG ? GO:0003735 ... Q5SKU1 34707295
    38743 7rq9:2D (2.6) BS03 MG ? GO:0002181 ... P60405 34707295
    38744 7rq9:2D (2.6) BS04 MG ? GO:0002181 ... P60405 34707295
    38745 7rq9:2D (2.6) BS05 MG ? GO:0002181 ... P60405 34707295
    38746 7rq9:2E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 34707295
    38747 7rq9:2E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 34707295
    38748 7rq9:2F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 34707295
    38749 7rq9:2F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 34707295
    38750 7rq9:2F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 34707295
    38751 7rq9:2Q (2.6) BS04 MG ? GO:0000049 ... P60489 34707295
    38752 7rq9:2Q (2.6) BS05 MG ? GO:0000049 ... P60489 34707295
    38753 7rq9:2T (2.6) BS03 MG ? GO:0003735 ... P60490 34707295
    38754 7rq9:2U (2.6) BS02 MG ? GO:0000027 ... P60491 34707295
    38755 7rq9:2V (2.6) BS02 MG ? GO:0003723 ... P60492 34707295
    38756 7rq9:2W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 34707295
    38757 7rq9:2X (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 34707295
    38758 7rq9:2Z (2.6) BS02 MG ? GO:0003723 ... Q5SHZ1 34707295
    38759 7rq9:2e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 34707295
    38760 7rq9:2f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 34707295
    38761 7rq9:2j (2.6) BS02 MG ? GO:0000049 ... Q5SHN7 34707295
    38762 7rq9:2k (2.6) BS02 MG ? GO:0003735 ... P80376 34707295
    38763 7rq9:2l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 34707295
    38764 7rq9:2l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 34707295
    38765 7rq9:2l (2.6) BS04 MG ? GO:0000049 ... Q5SHN3 34707295
    38766 7rq9:2q (2.6) BS02 MG ? GO:0003735 ... P0DOY7 34707295
    38767 7rq9:2t (2.6) BS02 MG ? GO:0003723 ... P80380 34707295
    38768 7rqa:10 (2.4) BS03 MG ? GO:0003735 ... P60493 35165455
    38769 7rqa:10 (2.4) BS04 MG ? GO:0003735 ... P60493 35165455
    38770 7rqa:10 (2.4) BS05 MG ? GO:0003735 ... P60493 35165455
    38771 7rqa:11 (2.4) BS02 MG ? GO:0003735 ... P60494 35165455
    38772 7rqa:13 (2.4) BS03 MG ? GO:0003735 ... Q5SHQ6 35165455
    38773 7rqa:13 (2.4) BS04 MG ? GO:0003735 ... Q5SHQ6 35165455
    38774 7rqa:15 (2.4) BS02 MG ? GO:0003735 ... P80339 35165455
    38775 7rqa:15 (2.4) BS03 MG ? GO:0003735 ... P80339 35165455
    38776 7rqa:17 (2.4) BS02 MG ? GO:0003735 ... P80340 35165455
    38777 7rqa:17 (2.4) BS03 MG ? GO:0003735 ... P80340 35165455
    38778 7rqa:18 (2.4) BS02 MG ? GO:0003735 ... Q5SKU1 35165455
    38779 7rqa:18 (2.4) BS03 MG ? GO:0003735 ... Q5SKU1 35165455
    38780 7rqa:1D (2.4) BS02 MG ? GO:0002181 ... P60405 35165455
    38781 7rqa:1D (2.4) BS03 MG ? GO:0002181 ... P60405 35165455
    38782 7rqa:1D (2.4) BS04 MG ? GO:0002181 ... P60405 35165455
    38783 7rqa:1D (2.4) BS05 MG ? GO:0002181 ... P60405 35165455
    38784 7rqa:1D (2.4) BS06 MG ? GO:0002181 ... P60405 35165455
    38785 7rqa:1D (2.4) BS07 MG ? GO:0002181 ... P60405 35165455
    38786 7rqa:1D (2.4) BS08 MG ? GO:0002181 ... P60405 35165455
    38787 7rqa:1D (2.4) BS09 MG ? GO:0002181 ... P60405 35165455
    38788 7rqa:1D (2.4) BS10 MG ? GO:0002181 ... P60405 35165455
    38789 7rqa:1D (2.4) BS11 MG ? GO:0002181 ... P60405 35165455
    38790 7rqa:1D (2.4) BS12 MG ? GO:0002181 ... P60405 35165455
    38791 7rqa:1D (2.4) BS13 MG ? GO:0002181 ... P60405 35165455
    38792 7rqa:1D (2.4) BS14 MG ? GO:0002181 ... P60405 35165455
    38793 7rqa:1E (2.4) BS02 MG ? GO:0003735 ... Q5SHN8 35165455
    38794 7rqa:1E (2.4) BS03 MG ? GO:0003735 ... Q5SHN8 35165455
    38795 7rqa:1E (2.4) BS04 MG ? GO:0003735 ... Q5SHN8 35165455
    38796 7rqa:1E (2.4) BS05 MG ? GO:0003735 ... Q5SHN8 35165455
    38797 7rqa:1F (2.4) BS02 MG ? GO:0003735 ... Q5SHN9 35165455
    38798 7rqa:1F (2.4) BS03 MG ? GO:0003735 ... Q5SHN9 35165455
    38799 7rqa:1F (2.4) BS04 MG ? GO:0003735 ... Q5SHN9 35165455
    38800 7rqa:1F (2.4) BS05 MG ? GO:0003735 ... Q5SHN9 35165455
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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