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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    38201 7qgg:SX (2.86) BS02 MG ? GO:0003735 ... A0A340WVW7 36038000
    38202 7qgk:A (1.5) BS01 MG ? GO:0006091 ... Q8ISF8 35328628
    38203 7qhf:A (1.63) BS07 MG 1.12.7.2 GO:0005506 ... P29166 37830175
    38204 7qhf:B (1.63) BS07 MG 1.12.7.2 GO:0005506 ... P29166 37830175
    38205 7qi4:AB (2.21) BS02 MG ? GO:0003735 ... Q9Y399 38769321
    38206 7qi5:AB (2.63) BS02 MG ? GO:0003735 ... Q9Y399 38769321
    38207 7qi6:AB (2.98) BS02 MG ? GO:0003735 ... Q9Y399 38769321
    38208 7qiw:I (2.35) BS03 MG ? GO:0000463 ... M1BRF8 35643637
    38209 7qiy:J (2.58) BS02 MG ? GO:0003676 ... A0A3Q7FJL7 35643637
    38210 7qiz:I (2.38) BS03 MG ? GO:0000463 ... M1BRF8 35643637
    38211 7qiz:TA (2.38) BS02 MG ? GO:0003676 ... A0A3Q7FJL7 35643637
    38212 7qjt:A (1.78) BS01 MG N/A GO:0016787 ... N/A N/A
    38213 7qjt:A (1.78) BS02 MG N/A GO:0016787 ... N/A N/A
    38214 7qjt:A (1.78) BS03 MG N/A GO:0016787 ... N/A N/A
    38215 7qlr:A (2.462) BS01 MG ? GO:0046872 ... A0A1J1J928 N/A
    38216 7qlr:B (2.462) BS01 MG ? GO:0046872 ... A0A1J1J928 N/A
    38217 7qlr:C (2.462) BS01 MG ? GO:0046872 ... A0A1J1J928 N/A
    38218 7qlr:C (2.462) BS02 MG ? GO:0046872 ... A0A1J1J928 N/A
    38219 7qlr:D (2.462) BS01 MG ? GO:0046872 ... A0A1J1J928 N/A
    38220 7qlr:D (2.462) BS02 MG ? GO:0046872 ... A0A1J1J928 N/A
    38221 7qo4:H (7.0) BS02 MG ? GO:0000502 ... P33299 N/A
    38222 7qo4:M (7.0) BS03 MG ? GO:0000502 ... P33297 N/A
    38223 7qo5:M (6.0) BS03 MG ? GO:0000502 ... P33297 35149681
    38224 7qo6:L (6.3) BS03 MG ? GO:0005524 ... N/A 35149681
    38225 7qo6:M (6.3) BS03 MG ? GO:0005524 ... N/A 35149681
    38226 7qoc:A (2.3) BS01 MG 3.1.7.2 GO:0008893 ... Q8NQV9 35714769
    38227 7qoc:B (2.3) BS01 MG 3.1.7.2 GO:0008893 ... Q8NQV9 35714769
    38228 7qof:D (3.01) BS01 MG ? GO:0019028 ... A0A385DVU6 37138077
    38229 7qoh:A (3.32) BS01 MG ? GO:0019028 ... A0A385DVU6 37138077
    38230 7qoh:B (3.32) BS02 MG ? GO:0019028 ... A0A385DVU6 37138077
    38231 7qoh:C (3.32) BS03 MG ? GO:0019028 ... A0A385DVU6 37138077
    38232 7qoh:D (3.32) BS02 MG ? GO:0019028 ... A0A385DVU6 37138077
    38233 7qoh:E (3.32) BS01 MG ? GO:0019028 ... A0A385DVU6 37138077
    38234 7qoh:F (3.32) BS01 MG ? GO:0019028 ... A0A385DVU6 37138077
    38235 7qoi:AB (3.62) BS01 MG ? GO:0019028 ... A0A385DVU6 37138077
    38236 7qoi:AC (3.62) BS01 MG ? GO:0019028 ... A0A385DVU6 37138077
    38237 7qoi:AD (3.62) BS01 MG ? GO:0019028 ... A0A385DVU6 37138077
    38238 7qoi:AE (3.62) BS01 MG ? GO:0019028 ... A0A385DVU6 37138077
    38239 7qoi:BB (3.62) BS01 MG ? GO:0019028 ... A0A385DVU6 37138077
    38240 7qoi:BD (3.62) BS01 MG ? GO:0019028 ... A0A385DVU6 37138077
    38241 7qoi:CB (3.62) BS01 MG ? GO:0019028 ... A0A385DVU6 37138077
    38242 7qoi:CD (3.62) BS01 MG ? GO:0019028 ... A0A385DVU6 37138077
    38243 7qoi:CE (3.62) BS01 MG ? GO:0019028 ... A0A385DVU6 37138077
    38244 7qoi:CF (3.62) BS01 MG ? GO:0019028 ... A0A385DVU6 37138077
    38245 7qoi:DB (3.62) BS01 MG ? GO:0019028 ... A0A385DVU6 37138077
    38246 7qoi:DE (3.62) BS01 MG ? GO:0019028 ... A0A385DVU6 37138077
    38247 7qoi:DF (3.62) BS01 MG ? GO:0019028 ... A0A385DVU6 37138077
    38248 7qoi:EB (3.62) BS01 MG ? GO:0019028 ... A0A385DVU6 37138077
    38249 7qoi:ED (3.62) BS01 MG ? GO:0019028 ... A0A385DVU6 37138077
    38250 7qoi:FA (3.62) BS01 MG ? GO:0019028 ... A0A385DT68 37138077
    38251 7qoi:FB (3.62) BS01 MG ? GO:0019028 ... A0A385DT68 37138077
    38252 7qoi:FC (3.62) BS01 MG ? GO:0019028 ... A0A385DT68 37138077
    38253 7qoi:FD (3.62) BS01 MG ? GO:0019028 ... A0A385DT68 37138077
    38254 7qoi:FE (3.62) BS01 MG ? GO:0019028 ... A0A385DT68 37138077
    38255 7qoi:FF (3.62) BS01 MG ? GO:0019028 ... A0A385DT68 37138077
    38256 7qoi:FG (3.62) BS01 MG ? GO:0019028 ... A0A385DT68 37138077
    38257 7qoi:FH (3.62) BS01 MG ? GO:0019028 ... A0A385DT68 37138077
    38258 7qoi:FI (3.62) BS01 MG ? GO:0019028 ... A0A385DT68 37138077
    38259 7qoi:FJ (3.62) BS01 MG ? GO:0019028 ... A0A385DT68 37138077
    38260 7qoi:FK (3.62) BS01 MG ? GO:0019028 ... A0A385DT68 37138077
    38261 7qoi:FL (3.62) BS01 MG ? GO:0019028 ... A0A385DT68 37138077
    38262 7qoj:A (3.21) BS01 MG ? GO:0019028 ... A0A385DT68 37138077
    38263 7qok:A (3.38) BS01 MG ? GO:0098015 ... A0A385DVD6 37138077
    38264 7qol:A (3.33) BS01 MG ? GO:0019028 ... A0A385DT68 37138077
    38265 7qol:O (3.33) BS01 MG ? GO:0019028 ... A0A385DT68 37138077
    38266 7qop:A (1.8) BS02 MG 4.2.1.84 GO:0003824 ... Q84FS5 36106339
    38267 7qou:A (1.3) BS02 MG 4.2.1.84 GO:0003824 ... Q84FS5 36106339
    38268 7qow:A (1.2) BS03 MG ? GO:0004035 ... Q93P54 36194497
    38269 7qow:A (1.2) BS05 MG ? GO:0004035 ... Q93P54 36194497
    38270 7qow:B (1.2) BS04 MG ? GO:0004035 ... Q93P54 36194497
    38271 7qow:B (1.2) BS05 MG ? GO:0004035 ... Q93P54 36194497
    38272 7qp0:A (1.6) BS01 MG 3.4.22.- GO:0004197 ... Q6FPX9 36316540
    38273 7qp0:B (1.6) BS01 MG 3.4.22.- GO:0004197 ... Q6FPX9 36316540
    38274 7qp6:d (4.7) BS02 MG ? GO:0000028 ... P39019 35489072
    38275 7qp6:f (4.7) BS02 MG ? GO:0002181 ... P62269 35489072
    38276 7qp8:A (1.7) BS03 MG ? GO:0004035 ... Q93P54 36194497
    38277 7qp8:A (1.7) BS04 MG ? GO:0004035 ... Q93P54 36194497
    38278 7qp8:B (1.7) BS03 MG ? GO:0004035 ... Q93P54 36194497
    38279 7qp8:B (1.7) BS04 MG ? GO:0004035 ... Q93P54 36194497
    38280 7qpi:A (2.5) BS03 MG ? N/A S4R4S2 35302785
    38281 7qpl:A (1.77) BS01 MG 3.1.3.3 GO:0006564 ... Q8YI30 N/A
    38282 7qpr:D (2.513) BS04 MG 2.7.6.5 GO:0000166 ... V5V8V7 N/A
    38283 7qsc:B (1.91) BS03 MG 3.6.5.2 GO:0000902 ... P61586 N/A
    38284 7qsc:D (1.91) BS03 MG 3.6.5.2 GO:0000902 ... P61586 N/A
    38285 7qsv:A (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    38286 7qsv:B (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    38287 7qsv:C (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    38288 7qsv:D (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    38289 7qsv:E (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    38290 7qsv:F (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    38291 7qsv:G (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    38292 7qsv:H (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    38293 7qsw:A (1.8) BS02 MG N/A GO:0000287 ... N/A 36227987
    38294 7qsw:C (1.8) BS02 MG N/A GO:0000287 ... N/A 36227987
    38295 7qsw:E (1.8) BS02 MG N/A GO:0000287 ... N/A 36227987
    38296 7qsw:G (1.8) BS02 MG N/A GO:0000287 ... N/A 36227987
    38297 7qsx:A (2.7) BS02 MG N/A GO:0000287 ... N/A 36227987
    38298 7qsx:B (2.7) BS02 MG N/A GO:0000287 ... N/A 36227987
    38299 7qsx:C (2.7) BS02 MG N/A GO:0000287 ... N/A 36227987
    38300 7qsx:D (2.7) BS03 MG N/A GO:0000287 ... N/A 36227987
    38301 7qsx:E (2.7) BS03 MG N/A GO:0000287 ... N/A 36227987
    38302 7qsx:F (2.7) BS03 MG N/A GO:0000287 ... N/A 36227987
    38303 7qsx:G (2.7) BS02 MG N/A GO:0000287 ... N/A 36227987
    38304 7qsx:H (2.7) BS03 MG N/A GO:0000287 ... N/A 36227987
    38305 7qsy:A (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    38306 7qsy:C (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    38307 7qsy:E (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    38308 7qsy:G (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    38309 7qsz:A (2.25) BS02 MG N/A GO:0000287 ... N/A 36227987
    38310 7qsz:B (2.25) BS02 MG N/A GO:0000287 ... N/A 36227987
    38311 7qsz:C (2.25) BS02 MG N/A GO:0000287 ... N/A 36227987
    38312 7qsz:D (2.25) BS02 MG N/A GO:0000287 ... N/A 36227987
    38313 7qt1:A (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    38314 7qt1:C (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    38315 7qt1:E (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    38316 7qt1:G (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    38317 7qtl:B (2.48) BS05 MG 2.7.7.48 GO:0000166 ... M9TLW3 36596301
    38318 7qtm:B (2.25) BS03 MG 3.6.5.2 GO:0000902 ... P61586 N/A
    38319 7qtm:I (2.25) BS03 MG 3.6.5.2 GO:0000902 ... P61586 N/A
    38320 7qtv:A (4.05) BS05 MG 7.2.2.13 GO:0000166 ... P05024 35926706
    38321 7qtv:A (4.05) BS06 MG 7.2.2.13 GO:0000166 ... P05024 35926706
    38322 7qtv:C (4.05) BS04 MG 7.2.2.13 GO:0000166 ... P05024 35926706
    38323 7qtv:C (4.05) BS05 MG 7.2.2.13 GO:0000166 ... P05024 35926706
    38324 7qux:A (1.48) BS03 MG 2.7.11.1 GO:0004672 ... P68400 35343996
    38325 7qv8:A (2.15) BS02 MG ? GO:0003677 ... A4I3C9 35502837
    38326 7qvi:A (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    38327 7qvi:B (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    38328 7qvi:C (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    38329 7qvi:D (3.0) BS03 MG N/A GO:0000287 ... N/A 36227987
    38330 7qvi:E (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    38331 7qvi:F (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    38332 7qvi:G (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    38333 7qvi:H (3.0) BS03 MG N/A GO:0000287 ... N/A 36227987
    38334 7qvi:I (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    38335 7qvi:J (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    38336 7qvi:K (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    38337 7qvi:L (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    38338 7qvi:M (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    38339 7qvi:N (3.0) BS03 MG N/A GO:0000287 ... N/A 36227987
    38340 7qvi:O (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    38341 7qvi:P (3.0) BS03 MG N/A GO:0000287 ... N/A 36227987
    38342 7qxp:F (3.6) BS03 MG ? GO:0000502 ... P17980 37595557
    38343 7qxu:F (4.3) BS02 MG ? GO:0000502 ... P17980 37595557
    38344 7qxx:F (4.4) BS03 MG ? GO:0000502 ... P17980 37595557
    38345 7qz2:A (1.87) BS02 MG 2.7.13.3 GO:0000160 ... G3XD98 35767996
    38346 7qz2:B (1.87) BS02 MG 2.7.13.3 GO:0000160 ... G3XD98 35767996
    38347 7qzu:A (1.964) BS03 MG 2.7.1.40 GO:0000287 ... P30613 35290845
    38348 7qzu:B (1.964) BS03 MG 2.7.1.40 GO:0000287 ... P30613 35290845
    38349 7qzu:C (1.964) BS03 MG 2.7.1.40 GO:0000287 ... P30613 35290845
    38350 7qzu:D (1.964) BS03 MG 2.7.1.40 GO:0000287 ... P30613 35290845
    38351 7qzu:E (1.964) BS03 MG 2.7.1.40 GO:0000287 ... P30613 35290845
    38352 7qzu:F (1.964) BS03 MG 2.7.1.40 GO:0000287 ... P30613 35290845
    38353 7qzu:G (1.964) BS03 MG 2.7.1.40 GO:0000287 ... P30613 35290845
    38354 7qzu:H (1.964) BS03 MG 2.7.1.40 GO:0000287 ... P30613 35290845
    38355 7r07:A (3.1) BS02 MG ? GO:0006974 ... Q48614 36107766
    38356 7r07:B (3.1) BS02 MG ? GO:0006974 ... Q48614 36107766
    38357 7r07:C (3.1) BS02 MG ? GO:0006974 ... Q48614 36107766
    38358 7r07:D (3.1) BS02 MG ? GO:0006974 ... Q48614 36107766
    38359 7r07:D (3.1) BS03 MG ? GO:0006974 ... Q48614 36107766
    38360 7r07:E (3.1) BS02 MG ? GO:0006974 ... Q48614 36107766
    38361 7r07:F (3.1) BS02 MG ? GO:0006974 ... Q48614 36107766
    38362 7r0d:AAA (1.7) BS02 MG 3.6.1.9 GO:0000278 ... Q9NV35 38944687
    38363 7r0d:BBB (1.7) BS02 MG 3.6.1.9 GO:0000278 ... Q9NV35 38944687
    38364 7r0e:A (2.51) BS03 MG 3.1.-.- GO:0003723 ... M9TI86 36596301
    38365 7r0e:B (2.51) BS04 MG 2.7.7.48 GO:0000166 ... M9TLW3 36596301
    38366 7r0t:A (2.194) BS02 MG ? GO:0003676 ... A0A411CW45 36322421
    38367 7r1f:B (2.58) BS04 MG 2.7.7.48 GO:0000166 ... Q5V8Y6 36596301
    38368 7r1f:B (2.58) BS05 MG 2.7.7.48 GO:0000166 ... Q5V8Y6 36596301
    38369 7r1f:B (2.58) BS06 MG 2.7.7.48 GO:0000166 ... Q5V8Y6 36596301
    38370 7r1m:A (1.64) BS01 MG ? GO:0046872 ... Q7WTL3 N/A
    38371 7r1m:B (1.64) BS01 MG ? GO:0046872 ... Q7WTL3 N/A
    38372 7r1n:AAA (2.072) BS01 MG ? GO:0030246 ... Q45095 N/A
    38373 7r1n:BBB (2.072) BS01 MG ? GO:0030246 ... Q45095 N/A
    38374 7r1n:CCC (2.072) BS01 MG ? GO:0030246 ... Q45095 N/A
    38375 7r1n:DDD (2.072) BS01 MG ? GO:0030246 ... Q45095 N/A
    38376 7r3b:D (2.82) BS02 MG 2.5.1.6 GO:0000287 ... Q88XB8 35762725
    38377 7r4g:O (2.5) BS02 MG ? GO:0005737 ... P34942 36701435
    38378 7r4h:C (2.34) BS02 MG 3.6.5.2 GO:0000139 ... P84077 36261523
    38379 7r4h:H (2.34) BS02 MG 3.6.5.2 GO:0000139 ... P84077 36261523
    38380 7r5e:A (2.2) BS02 MG ? GO:0046872 ... A0A4R2M5S2 35527501
    38381 7r5e:B (2.2) BS02 MG ? GO:0046872 ... A0A4R2M5S2 35527501
    38382 7r5g:A (2.2) BS02 MG ? GO:0046872 ... A0A4R2M5S2 35527501
    38383 7r5g:B (2.2) BS02 MG ? GO:0046872 ... A0A4R2M5S2 35527501
    38384 7r5p:A (1.68) BS02 MG ? N/A A0A4R2M5S2 35527501
    38385 7r5p:B (1.68) BS02 MG ? N/A A0A4R2M5S2 35527501
    38386 7r5p:C (1.68) BS02 MG ? N/A A0A4R2M5S2 35527501
    38387 7r5p:D (1.68) BS02 MG ? N/A A0A4R2M5S2 35527501
    38388 7r5p:E (1.68) BS02 MG ? N/A A0A4R2M5S2 35527501
    38389 7r5p:F (1.68) BS02 MG ? N/A A0A4R2M5S2 35527501
    38390 7r6t:L (2.9) BS03 MG 3.1.30.- GO:0003676 ... Q9Y2C4 N/A
    38391 7r6v:D (2.16) BS03 MG 3.1.30.- GO:0003676 ... Q9Y2C4 N/A
    38392 7r6v:I (2.16) BS03 MG 3.1.30.- GO:0003676 ... Q9Y2C4 N/A
    38393 7r6y:A (2.25) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 35163274
    38394 7r6y:B (2.25) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 35163274
    38395 7r6y:C (2.25) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 35163274
    38396 7r6y:D (2.25) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 35163274
    38397 7r7j:A (2.03) BS02 MG 3.6.4.12 GO:0003677 ... P33919 35482735
    38398 7r7j:B (2.03) BS02 MG 3.6.4.12 GO:0003677 ... P33919 35482735
    38399 7r81:F2 (2.7) BS02 MG ? GO:0003723 ... Q7SE03 34815343
    38400 7r8e:A (3.7) BS02 MG 7.6.2.- GO:0000139 ... P45844 34404721
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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