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BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2801 1wa5:A (2.0) BS02 MG 3.6.5.- GO:0003924 ... P62825 N/A
    2802 1wax:A (2.2) BS01 MG 3.1.3.48 GO:0004725 ... P18031 15658854
    2803 1wbq:A (2.3) BS02 MG 3.4.11.9 GO:0004177 ... P15034 16229471
    2804 1wbq:B (2.3) BS02 MG 3.4.11.9 GO:0004177 ... P15034 16229471
    2805 1wbq:C (2.3) BS02 MG 3.4.11.9 GO:0004177 ... P15034 16229471
    2806 1wbq:D (2.3) BS02 MG 3.4.11.9 GO:0004177 ... P15034 16229471
    2807 1wc1:A (1.93) BS02 MG 2.7.13.3 GO:0009190 ... O32393 15619637
    2808 1wc1:A (1.93) BS03 MG 2.7.13.3 GO:0009190 ... O32393 15619637
    2809 1wc1:B (1.93) BS02 MG 2.7.13.3 GO:0009190 ... O32393 15619637
    2810 1wc1:B (1.93) BS03 MG 2.7.13.3 GO:0009190 ... O32393 15619637
    2811 1wc1:C (1.93) BS04 MG 2.7.13.3 GO:0009190 ... O32393 15619637
    2812 1wc1:C (1.93) BS05 MG 2.7.13.3 GO:0009190 ... O32393 15619637
    2813 1wc6:A (2.51) BS02 MG 2.7.13.3 GO:0009190 ... O32393 15619637
    2814 1wc6:B (2.51) BS02 MG 2.7.13.3 GO:0009190 ... O32393 15619637
    2815 1wc6:B (2.51) BS03 MG 2.7.13.3 GO:0009190 ... O32393 15619637
    2816 1wc6:C (2.51) BS03 MG 2.7.13.3 GO:0009190 ... O32393 15619637
    2817 1wcm:A (3.8) BS02 MG 2.7.7.6 GO:0000428 ... P04050 15591044
    2818 1wdc:B (2.0) BS01 MG ? GO:0005509 ... P13543 8805510
    2819 1wdd:A (1.35) BS01 MG 4.1.1.39 GO:0000166 ... P0C512 22609438
    2820 1wdd:E (1.35) BS02 MG 4.1.1.39 GO:0000166 ... P0C512 22609438
    2821 1wdt:A (2.2) BS01 MG ? GO:0003746 ... Q5SI76 N/A
    2822 1wf3:A (1.88) BS01 MG ? GO:0000028 ... Q5SM23 N/A
    2823 1wkl:B (2.2) BS01 MG 2.7.4.6 GO:0004550 ... Q5SLV5 N/A
    2824 1wl6:A (2.0) BS01 MG 3.4.11.9 GO:0004177 ... P15034 16229471
    2825 1wl6:A (2.0) BS02 MG 3.4.11.9 GO:0004177 ... P15034 16229471
    2826 1wpg:A (2.3) BS01 MG 7.2.2.10 GO:0000166 ... P04191 15448704
    2827 1wpg:B (2.3) BS01 MG 7.2.2.10 GO:0000166 ... P04191 15448704
    2828 1wpg:C (2.3) BS01 MG 7.2.2.10 GO:0000166 ... P04191 15448704
    2829 1wpg:D (2.3) BS01 MG 7.2.2.10 GO:0000166 ... P04191 15448704
    2830 1wpv:A (1.7) BS01 MG ? GO:0003723 ... P10943 15758992
    2831 1wpv:B (1.7) BS02 MG ? GO:0003723 ... P10943 15758992
    2832 1wpv:C (1.7) BS02 MG ? GO:0003723 ... P10943 15758992
    2833 1wq1:R (2.5) BS01 MG 3.6.5.2 GO:0003924 ... P01112 9219684
    2834 1wqa:A (2.0) BS01 MG 5.4.2.8 GO:0004615 ... O58651 N/A
    2835 1wqa:B (2.0) BS01 MG 5.4.2.8 GO:0004615 ... O58651 N/A
    2836 1wqa:C (2.0) BS01 MG 5.4.2.8 GO:0004615 ... O58651 N/A
    2837 1wqa:D (2.0) BS01 MG 5.4.2.8 GO:0004615 ... O58651 N/A
    2838 1wtc:A (1.9) BS01 MG 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... O59791 19640845
    2839 1wuf:A (2.9) BS01 MG 4.2.1.113
    5.1.1.-    		 GO:0000287 ... Q927X3 24872444
    2840 1wuf:B (2.9) BS01 MG 4.2.1.113
    5.1.1.-    		 GO:0000287 ... Q927X3 24872444
    2841 1wuh:L (1.24) BS02 MG 1.12.2.1 GO:0008901 ... P21852 N/A
    2842 1wui:L (1.04) BS02 MG 1.12.2.1 GO:0008901 ... P21852 16271886
    2843 1wuj:L (1.4) BS02 MG 1.12.2.1 GO:0008901 ... P21852 16271886
    2844 1wuk:L (1.1) BS02 MG 1.12.2.1 GO:0008901 ... P21852 16271886
    2845 1wul:L (1.5) BS02 MG 1.12.2.1 GO:0008901 ... P21852 16271886
    2846 1wvc:A (2.5) BS01 MG 2.7.7.33 GO:0000166 ... Q8Z5I4 15634670
    2847 1wvm:A (1.6) BS04 MG 3.4.21.- GO:0004252 ... Q65Z69 N/A
    2848 1wvm:A (1.6) BS05 MG 3.4.21.- GO:0004252 ... Q65Z69 N/A
    2849 1wvm:A (1.6) BS06 MG 3.4.21.- GO:0004252 ... Q65Z69 N/A
    2850 1wvm:B (1.6) BS04 MG 3.4.21.- GO:0004252 ... Q65Z69 N/A
    2851 1wvm:B (1.6) BS05 MG 3.4.21.- GO:0004252 ... Q65Z69 N/A
    2852 1wvm:B (1.6) BS06 MG 3.4.21.- GO:0004252 ... Q65Z69 N/A
    2853 1wxe:A (1.9) BS01 MG 6.3.1.5 GO:0000287 ... P18843 15699042
    2854 1wxg:A (1.9) BS01 MG 6.3.1.5 GO:0000287 ... P18843 15699042
    2855 1wxi:A (1.7) BS01 MG 6.3.1.5 GO:0000287 ... P18843 15699042
    2856 1wyw:A (2.1) BS01 MG 3.2.2.29 GO:0000700 ... Q13569 15959518
    2857 1wyw:A (2.1) BS02 MG 3.2.2.29 GO:0000700 ... Q13569 15959518
    2858 1wzc:A (1.9) BS01 MG 3.1.3.70 GO:0000287 ... O58690 19018103
    2859 1wzc:B (1.9) BS01 MG 3.1.3.70 GO:0000287 ... O58690 19018103
    2860 1x3s:A (1.32) BS01 MG ? GO:0003924 ... Q9NP72 N/A
    2861 1x83:A (1.8) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 15643873
    2862 1x83:B (1.8) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 15643873
    2863 1x84:A (1.78) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 15643873
    2864 1x84:B (1.78) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 15643873
    2865 1x8b:A (1.81) BS01 MG 2.7.10.2 GO:0004672 ... P30291 15837193
    2866 1x8b:A (1.81) BS02 MG 2.7.10.2 GO:0004672 ... P30291 15837193
    2867 1xbv:A (1.66) BS02 MG 4.1.1.85 GO:0000287 ... P39304 15697207
    2868 1xbv:B (1.66) BS02 MG 4.1.1.85 GO:0000287 ... P39304 15697207
    2869 1xbx:A (1.81) BS02 MG 4.1.1.85 GO:0000287 ... P39304 15697207
    2870 1xbx:B (1.81) BS02 MG 4.1.1.85 GO:0000287 ... P39304 15697207
    2871 1xby:A (1.58) BS02 MG 4.1.1.85 GO:0000287 ... P39304 15697207
    2872 1xby:B (1.58) BS02 MG 4.1.1.85 GO:0000287 ... P39304 15697207
    2873 1xbz:A (1.8) BS01 MG 4.1.1.85 GO:0000287 ... P39304 15697207
    2874 1xbz:A (1.8) BS02 MG 4.1.1.85 GO:0000287 ... P39304 15697207
    2875 1xcp:A (3.2) BS01 MG 1.18.6.1 GO:0005524 ... P00459 15650336
    2876 1xcp:B (3.2) BS01 MG 1.18.6.1 GO:0005524 ... P00459 15650336
    2877 1xcp:C (3.2) BS01 MG 1.18.6.1 GO:0005524 ... P00459 15650336
    2878 1xcp:D (3.2) BS02 MG 1.18.6.1 GO:0005524 ... P00459 15650336
    2879 1xd2:A (2.7) BS01 MG 3.6.5.2 GO:0003924 ... P01112 15507210
    2880 1xd3:A (1.45) BS01 MG 3.4.19.12 GO:0004843 ... P15374 15531586
    2881 1xd3:A (1.45) BS02 MG 3.4.19.12 GO:0004843 ... P15374 15531586
    2882 1xd3:C (1.45) BS01 MG 3.4.19.12 GO:0004843 ... P15374 15531586
    2883 1xd3:C (1.45) BS02 MG 3.4.19.12 GO:0004843 ... P15374 15531586
    2884 1xd9:A (2.8) BS01 MG 1.18.6.1 GO:0005524 ... P00459 15549494
    2885 1xd9:B (2.8) BS02 MG 1.18.6.1 GO:0005524 ... P00459 15549494
    2886 1xdd:A (2.2) BS01 MG ? N/A P20701 15304496
    2887 1xdd:B (2.2) BS02 MG ? N/A P20701 15304496
    2888 1xdg:A (2.1) BS01 MG ? N/A P20701 15304496
    2889 1xdg:B (2.1) BS02 MG ? N/A P20701 15304496
    2890 1xdp:A (2.5) BS01 MG 2.7.4.1 GO:0003824 ... P0A7B1 15947782
    2891 1xdp:A (2.5) BS02 MG 2.7.4.1 GO:0003824 ... P0A7B1 15947782
    2892 1xe4:A (1.95) BS01 MG 2.3.2.10 GO:0008360 ... Q9EY50 15901708
    2893 1xed:A (1.9) BS01 MG ? N/A P01833 15530357
    2894 1xed:B (1.9) BS01 MG ? N/A P01833 15530357
    2895 1xex:A (2.5) BS01 MG ? N/A Q8TZY2 15458651
    2896 1xf8:A (1.9) BS01 MG 2.3.2.10 GO:0008360 ... Q9EY50 15901708
    2897 1xf9:B (2.7) BS01 MG 5.6.1.6 GO:0005524 ... P26361 15619636
    2898 1xf9:C (2.7) BS01 MG 5.6.1.6 GO:0005524 ... P26361 15619636
    2899 1xf9:D (2.7) BS01 MG 5.6.1.6 GO:0005524 ... P26361 15619636
    2900 1xf9:D (2.7) BS02 MG 5.6.1.6 GO:0005524 ... P26361 15619636
    2901 1xfa:A (3.1) BS01 MG 5.6.1.6 GO:0005524 ... P26361 15619636
    2902 1xfa:B (3.1) BS02 MG 5.6.1.6 GO:0005524 ... P26361 15619636
    2903 1xfi:A (1.7) BS01 MG 3.1.3.- GO:0004594 ... Q949P3 16511115
    2904 1xfu:A (3.35) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2905 1xfu:B (3.35) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2906 1xfu:C (3.35) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2907 1xfu:D (3.35) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2908 1xfu:E (3.35) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2909 1xfu:F (3.35) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2910 1xfv:A (3.35) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2911 1xfv:B (3.35) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2912 1xfv:C (3.35) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2913 1xfv:D (3.35) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2914 1xfv:E (3.35) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2915 1xfv:F (3.35) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2916 1xfw:A (3.4) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2917 1xfw:B (3.4) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2918 1xfw:C (3.4) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2919 1xfw:D (3.4) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2920 1xfw:E (3.4) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2921 1xfw:F (3.4) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2922 1xfx:A (3.2) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2923 1xfx:B (3.2) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2924 1xfx:C (3.2) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2925 1xfx:D (3.2) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2926 1xfx:E (3.2) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2927 1xfx:F (3.2) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2928 1xfy:A (3.3) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2929 1xfy:B (3.3) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2930 1xfy:C (3.3) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2931 1xfy:D (3.3) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2932 1xfy:E (3.3) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2933 1xfy:F (3.3) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2934 1xfz:A (3.25) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2935 1xfz:B (3.25) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2936 1xfz:C (3.25) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2937 1xfz:D (3.25) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2938 1xfz:E (3.25) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2939 1xfz:F (3.25) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2940 1xhf:A (2.152) BS01 MG ? GO:0000160 ... P0A9Q1 15876365
    2941 1xhf:B (2.152) BS01 MG ? GO:0000160 ... P0A9Q1 15876365
    2942 1xi1:A (2.2) BS02 MG 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P03680 15608377
    2943 1xi1:B (2.2) BS02 MG 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P03680 15608377
    2944 1xin:A (2.4) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    2945 1xin:B (2.4) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    2946 1xin:C (2.4) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    2947 1xin:D (2.4) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    2948 1xlb:A (2.5) BS01 MG 5.3.1.5 GO:0000287 ... P12070 2319597
    2949 1xlb:B (2.5) BS01 MG 5.3.1.5 GO:0000287 ... P12070 2319597
    2950 1xlc:A (2.5) BS02 MG 5.3.1.5 GO:0000287 ... P12070 2319597
    2951 1xlc:B (2.5) BS02 MG 5.3.1.5 GO:0000287 ... P12070 2319597
    2952 1xlg:A (2.5) BS02 MG 5.3.1.5 GO:0000287 ... P12070 2319597
    2953 1xlg:B (2.5) BS02 MG 5.3.1.5 GO:0000287 ... P12070 2319597
    2954 1xmi:A (2.25) BS01 MG 5.6.1.6 GO:0005524 ... P13569 15528182
    2955 1xmi:B (2.25) BS01 MG 5.6.1.6 GO:0005524 ... P13569 15528182
    2956 1xmi:C (2.25) BS01 MG 5.6.1.6 GO:0005524 ... P13569 15528182
    2957 1xmi:D (2.25) BS01 MG 5.6.1.6 GO:0005524 ... P13569 15528182
    2958 1xmi:E (2.25) BS02 MG 5.6.1.6 GO:0005524 ... P13569 15528182
    2959 1xmo:J (3.25) BS02 MG ? GO:0000049 ... Q5SHN7 15558052
    2960 1xmo:L (3.25) BS02 MG ? GO:0000049 ... Q5SHN3 15558052
    2961 1xmq:L (3.0) BS02 MG ? GO:0000049 ... Q5SHN3 15558052
    2962 1xmv:A (1.9) BS01 MG ? GO:0000725 ... P0A7G6 15610008
    2963 1xnq:J (3.05) BS02 MG ? GO:0000049 ... Q5SHN7 15558050
    2964 1xnq:L (3.05) BS02 MG ? GO:0000049 ... Q5SHN3 15558050
    2965 1xnr:J (3.1) BS02 MG ? GO:0000049 ... Q5SHN7 15558050
    2966 1xnr:L (3.1) BS02 MG ? GO:0000049 ... Q5SHN3 15558050
    2967 1xp5:A (3.0) BS01 MG 7.2.2.10 GO:0000166 ... P04191 15618517
    2968 1xpo:A (3.15) BS02 MG 3.6.4.- GO:0003676 ... P0AG30 15642265
    2969 1xpr:F (3.15) BS02 MG 3.6.4.- GO:0003676 ... P0AG30 15642265
    2970 1xpu:A (3.05) BS02 MG 3.6.4.- GO:0003676 ... P0AG30 15642265
    2971 1xpu:B (3.05) BS02 MG 3.6.4.- GO:0003676 ... P0AG30 15642265
    2972 1xpu:C (3.05) BS02 MG 3.6.4.- GO:0003676 ... P0AG30 15642265
    2973 1xpu:E (3.05) BS02 MG 3.6.4.- GO:0003676 ... P0AG30 15642265
    2974 1xpy:A (2.3) BS01 MG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q9RYA6 15313614
    2975 1xpy:B (2.3) BS01 MG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q9RYA6 15313614
    2976 1xpy:D (2.3) BS01 MG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q9RYA6 15313614
    2977 1xqa:A (1.8) BS01 MG ? GO:0046872 ... Q81AI8 N/A
    2978 1xqa:B (1.8) BS01 MG ? GO:0046872 ... Q81AI8 N/A
    2979 1xr1:A (2.1) BS01 MG 2.7.11.1 GO:0004672 ... P11309 15525646
    2980 1xra:A (3.0) BS01 MG 2.5.1.6 GO:0000287 ... P0A817 8550549
    2981 1xrj:B (2.0) BS01 MG 2.7.1.48 GO:0004849 ... Q9BZX2 15735337
    2982 1xs2:A (2.3) BS01 MG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q9RYA6 15313614
    2983 1xs2:B (2.3) BS01 MG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q9RYA6 15313614
    2984 1xs2:C (2.3) BS01 MG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q9RYA6 15313614
    2985 1xs2:D (2.3) BS01 MG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q9RYA6 15313614
    2986 1xsn:A (1.95) BS04 MG 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 15608652
    2987 1xtr:A (2.65) BS01 MG 3.6.5.- GO:0000139 ... Q15382 15728574
    2988 1xts:A (2.8) BS01 MG 3.6.5.- GO:0000139 ... Q15382 15728574
    2989 1xu4:A (2.4) BS01 MG ? GO:0000166 ... O73948 15537659
    2990 1xuo:A (1.8) BS01 MG ? N/A P20701 15686945
    2991 1xuo:B (1.8) BS01 MG ? N/A P20701 15686945
    2992 1xx1:A (1.75) BS01 MG 4.6.1.- GO:0005576 ... Q8I914 15654080
    2993 1xx1:B (1.75) BS01 MG 4.6.1.- GO:0005576 ... Q8I914 15654080
    2994 1xx1:C (1.75) BS01 MG 4.6.1.- GO:0005576 ... Q8I914 15654080
    2995 1xx1:D (1.75) BS01 MG 4.6.1.- GO:0005576 ... Q8I914 15654080
    2996 1xxx:A (2.28) BS01 MG 4.3.3.7 GO:0005737 ... P9WP25 18062777
    2997 1xxx:B (2.28) BS01 MG 4.3.3.7 GO:0005737 ... P9WP25 18062777
    2998 1xxx:C (2.28) BS01 MG 4.3.3.7 GO:0005737 ... P9WP25 18062777
    2999 1xxx:D (2.28) BS01 MG 4.3.3.7 GO:0005737 ... P9WP25 18062777
    3000 1xxx:E (2.28) BS01 MG 4.3.3.7 GO:0005737 ... P9WP25 18062777
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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