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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2601 1vy6:AL (2.9) BS03 MG ? GO:0000049 ... Q5SHN3 25132179
    2602 1vy6:AM (2.9) BS03 MG ? GO:0000049 ... P80377 25132179
    2603 1vy6:B0 (2.9) BS04 MG ? GO:0003735 ... P60493 25132179
    2604 1vy6:B0 (2.9) BS05 MG ? GO:0003735 ... P60493 25132179
    2605 1vy6:B5 (2.9) BS02 MG ? GO:0003735 ... P80339 25132179
    2606 1vy6:B6 (2.9) BS02 MG ? GO:0000049 ... P35871 25132179
    2607 1vy6:B7 (2.9) BS02 MG ? GO:0003735 ... P80340 25132179
    2608 1vy6:B7 (2.9) BS03 MG ? GO:0003735 ... P80340 25132179
    2609 1vy6:BD (2.9) BS02 MG ? GO:0002181 ... P60405 25132179
    2610 1vy6:BD (2.9) BS03 MG ? GO:0002181 ... P60405 25132179
    2611 1vy6:BD (2.9) BS04 MG ? GO:0002181 ... P60405 25132179
    2612 1vy6:BD (2.9) BS05 MG ? GO:0002181 ... P60405 25132179
    2613 1vy6:BD (2.9) BS06 MG ? GO:0002181 ... P60405 25132179
    2614 1vy6:BD (2.9) BS07 MG ? GO:0002181 ... P60405 25132179
    2615 1vy6:BE (2.9) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    2616 1vy6:BE (2.9) BS03 MG ? GO:0003735 ... Q5SHN8 25132179
    2617 1vy6:BF (2.9) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    2618 1vy6:BF (2.9) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    2619 1vy6:BF (2.9) BS04 MG ? GO:0003735 ... Q5SHN9 25132179
    2620 1vy6:BG (2.9) BS04 MG ? GO:0000049 ... Q5SHQ0 25132179
    2621 1vy6:BG (2.9) BS05 MG ? GO:0000049 ... Q5SHQ0 25132179
    2622 1vy6:BN (2.9) BS02 MG ? GO:0003729 ... P60488 25132179
    2623 1vy6:BP (2.9) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    2624 1vy6:BP (2.9) BS03 MG ? GO:0003735 ... Q5SHQ7 25132179
    2625 1vy6:BQ (2.9) BS03 MG ? GO:0000049 ... P60489 25132179
    2626 1vy6:BQ (2.9) BS04 MG ? GO:0000049 ... P60489 25132179
    2627 1vy6:BR (2.9) BS02 MG ? GO:0003735 ... Q9Z9H5 25132179
    2628 1vy6:BR (2.9) BS03 MG ? GO:0003735 ... Q9Z9H5 25132179
    2629 1vy6:BU (2.9) BS02 MG ? GO:0000027 ... P60491 25132179
    2630 1vy6:BV (2.9) BS02 MG ? GO:0003723 ... P60492 25132179
    2631 1vy6:BV (2.9) BS03 MG ? GO:0003723 ... P60492 25132179
    2632 1vy6:BV (2.9) BS04 MG ? GO:0003723 ... P60492 25132179
    2633 1vy6:BV (2.9) BS05 MG ? GO:0003723 ... P60492 25132179
    2634 1vy6:BW (2.9) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    2635 1vy6:BW (2.9) BS03 MG ? GO:0003735 ... Q5SHP3 25132179
    2636 1vy6:CE (2.9) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    2637 1vy6:CE (2.9) BS03 MG ? GO:0003723 ... Q5SHQ5 25132179
    2638 1vy6:CK (2.9) BS02 MG ? GO:0003735 ... P80376 25132179
    2639 1vy6:CT (2.9) BS02 MG ? GO:0003723 ... P80380 25132179
    2640 1vy6:D1 (2.9) BS02 MG ? GO:0003735 ... P60494 25132179
    2641 1vy6:D3 (2.9) BS03 MG ? GO:0003735 ... Q5SHQ6 25132179
    2642 1vy6:D5 (2.9) BS02 MG ? GO:0003735 ... P80339 25132179
    2643 1vy6:D5 (2.9) BS04 MG ? GO:0003735 ... P80339 25132179
    2644 1vy6:DD (2.9) BS03 MG ? GO:0002181 ... P60405 25132179
    2645 1vy6:DD (2.9) BS04 MG ? GO:0002181 ... P60405 25132179
    2646 1vy6:DE (2.9) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    2647 1vy6:DF (2.9) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    2648 1vy6:DG (2.9) BS04 MG ? GO:0000049 ... Q5SHQ0 25132179
    2649 1vy6:DP (2.9) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    2650 1vy6:DQ (2.9) BS03 MG ? GO:0000049 ... P60489 25132179
    2651 1vy6:DQ (2.9) BS04 MG ? GO:0000049 ... P60489 25132179
    2652 1vy6:DQ (2.9) BS05 MG ? GO:0000049 ... P60489 25132179
    2653 1vy6:DV (2.9) BS02 MG ? GO:0003723 ... P60492 25132179
    2654 1vy6:DV (2.9) BS03 MG ? GO:0003723 ... P60492 25132179
    2655 1vy6:DW (2.9) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    2656 1vy7:AE (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    2657 1vy7:AE (2.8) BS03 MG ? GO:0003723 ... Q5SHQ5 25132179
    2658 1vy7:AK (2.8) BS02 MG ? GO:0003735 ... P80376 25132179
    2659 1vy7:AL (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 25132179
    2660 1vy7:AM (2.8) BS04 MG ? GO:0000049 ... P80377 25132179
    2661 1vy7:B0 (2.8) BS04 MG ? GO:0003735 ... P60493 25132179
    2662 1vy7:B0 (2.8) BS05 MG ? GO:0003735 ... P60493 25132179
    2663 1vy7:B0 (2.8) BS06 MG ? GO:0003735 ... P60493 25132179
    2664 1vy7:B1 (2.8) BS03 MG ? GO:0003735 ... P60494 25132179
    2665 1vy7:B3 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 25132179
    2666 1vy7:B5 (2.8) BS02 MG ? GO:0003735 ... P80339 25132179
    2667 1vy7:B5 (2.8) BS03 MG ? GO:0003735 ... P80339 25132179
    2668 1vy7:B7 (2.8) BS02 MG ? GO:0003735 ... P80340 25132179
    2669 1vy7:BD (2.8) BS03 MG ? GO:0002181 ... P60405 25132179
    2670 1vy7:BD (2.8) BS04 MG ? GO:0002181 ... P60405 25132179
    2671 1vy7:BD (2.8) BS05 MG ? GO:0002181 ... P60405 25132179
    2672 1vy7:BD (2.8) BS06 MG ? GO:0002181 ... P60405 25132179
    2673 1vy7:BD (2.8) BS07 MG ? GO:0002181 ... P60405 25132179
    2674 1vy7:BD (2.8) BS08 MG ? GO:0002181 ... P60405 25132179
    2675 1vy7:BD (2.8) BS09 MG ? GO:0002181 ... P60405 25132179
    2676 1vy7:BD (2.8) BS10 MG ? GO:0002181 ... P60405 25132179
    2677 1vy7:BD (2.8) BS11 MG ? GO:0002181 ... P60405 25132179
    2678 1vy7:BD (2.8) BS12 MG ? GO:0002181 ... P60405 25132179
    2679 1vy7:BE (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    2680 1vy7:BE (2.8) BS03 MG ? GO:0003735 ... Q5SHN8 25132179
    2681 1vy7:BE (2.8) BS04 MG ? GO:0003735 ... Q5SHN8 25132179
    2682 1vy7:BE (2.8) BS05 MG ? GO:0003735 ... Q5SHN8 25132179
    2683 1vy7:BF (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    2684 1vy7:BF (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    2685 1vy7:BF (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 25132179
    2686 1vy7:BF (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 25132179
    2687 1vy7:BF (2.8) BS06 MG ? GO:0003735 ... Q5SHN9 25132179
    2688 1vy7:BG (2.8) BS03 MG ? GO:0000049 ... Q5SHQ0 25132179
    2689 1vy7:BN (2.8) BS02 MG ? GO:0003729 ... P60488 25132179
    2690 1vy7:BN (2.8) BS03 MG ? GO:0003729 ... P60488 25132179
    2691 1vy7:BN (2.8) BS04 MG ? GO:0003729 ... P60488 25132179
    2692 1vy7:BP (2.8) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    2693 1vy7:BP (2.8) BS03 MG ? GO:0003735 ... Q5SHQ7 25132179
    2694 1vy7:BQ (2.8) BS03 MG ? GO:0000049 ... P60489 25132179
    2695 1vy7:BQ (2.8) BS04 MG ? GO:0000049 ... P60489 25132179
    2696 1vy7:BQ (2.8) BS05 MG ? GO:0000049 ... P60489 25132179
    2697 1vy7:BQ (2.8) BS06 MG ? GO:0000049 ... P60489 25132179
    2698 1vy7:BR (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 25132179
    2699 1vy7:BR (2.8) BS03 MG ? GO:0003735 ... Q9Z9H5 25132179
    2700 1vy7:BR (2.8) BS04 MG ? GO:0003735 ... Q9Z9H5 25132179
    2701 1vy7:BU (2.8) BS02 MG ? GO:0000027 ... P60491 25132179
    2702 1vy7:BU (2.8) BS03 MG ? GO:0000027 ... P60491 25132179
    2703 1vy7:BU (2.8) BS04 MG ? GO:0000027 ... P60491 25132179
    2704 1vy7:BU (2.8) BS05 MG ? GO:0000027 ... P60491 25132179
    2705 1vy7:BU (2.8) BS06 MG ? GO:0000027 ... P60491 25132179
    2706 1vy7:BU (2.8) BS07 MG ? GO:0000027 ... P60491 25132179
    2707 1vy7:BU (2.8) BS08 MG ? GO:0000027 ... P60491 25132179
    2708 1vy7:BV (2.8) BS02 MG ? GO:0003723 ... P60492 25132179
    2709 1vy7:BV (2.8) BS03 MG ? GO:0003723 ... P60492 25132179
    2710 1vy7:BV (2.8) BS04 MG ? GO:0003723 ... P60492 25132179
    2711 1vy7:BV (2.8) BS05 MG ? GO:0003723 ... P60492 25132179
    2712 1vy7:BV (2.8) BS06 MG ? GO:0003723 ... P60492 25132179
    2713 1vy7:BW (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    2714 1vy7:BW (2.8) BS03 MG ? GO:0003735 ... Q5SHP3 25132179
    2715 1vy7:BX (2.8) BS02 MG ? GO:0000027 ... Q5SHP0 25132179
    2716 1vy7:BX (2.8) BS03 MG ? GO:0000027 ... Q5SHP0 25132179
    2717 1vy7:CE (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    2718 1vy7:CE (2.8) BS03 MG ? GO:0003723 ... Q5SHQ5 25132179
    2719 1vy7:CF (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 25132179
    2720 1vy7:CK (2.8) BS02 MG ? GO:0003735 ... P80376 25132179
    2721 1vy7:CT (2.8) BS02 MG ? GO:0003723 ... P80380 25132179
    2722 1vy7:D3 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 25132179
    2723 1vy7:D5 (2.8) BS02 MG ? GO:0003735 ... P80339 25132179
    2724 1vy7:D7 (2.8) BS02 MG ? GO:0003735 ... P80340 25132179
    2725 1vy7:DD (2.8) BS03 MG ? GO:0002181 ... P60405 25132179
    2726 1vy7:DD (2.8) BS04 MG ? GO:0002181 ... P60405 25132179
    2727 1vy7:DD (2.8) BS05 MG ? GO:0002181 ... P60405 25132179
    2728 1vy7:DD (2.8) BS06 MG ? GO:0002181 ... P60405 25132179
    2729 1vy7:DD (2.8) BS07 MG ? GO:0002181 ... P60405 25132179
    2730 1vy7:DD (2.8) BS08 MG ? GO:0002181 ... P60405 25132179
    2731 1vy7:DE (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    2732 1vy7:DE (2.8) BS03 MG ? GO:0003735 ... Q5SHN8 25132179
    2733 1vy7:DF (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    2734 1vy7:DF (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    2735 1vy7:DF (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 25132179
    2736 1vy7:DF (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 25132179
    2737 1vy7:DG (2.8) BS03 MG ? GO:0000049 ... Q5SHQ0 25132179
    2738 1vy7:DP (2.8) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    2739 1vy7:DQ (2.8) BS03 MG ? GO:0000049 ... P60489 25132179
    2740 1vy7:DQ (2.8) BS04 MG ? GO:0000049 ... P60489 25132179
    2741 1vy7:DQ (2.8) BS05 MG ? GO:0000049 ... P60489 25132179
    2742 1vy7:DU (2.8) BS02 MG ? GO:0000027 ... P60491 25132179
    2743 1vy7:DU (2.8) BS03 MG ? GO:0000027 ... P60491 25132179
    2744 1vy7:DU (2.8) BS04 MG ? GO:0000027 ... P60491 25132179
    2745 1vy7:DV (2.8) BS02 MG ? GO:0003723 ... P60492 25132179
    2746 1vy7:DV (2.8) BS03 MG ? GO:0003723 ... P60492 25132179
    2747 1vy7:DV (2.8) BS04 MG ? GO:0003723 ... P60492 25132179
    2748 1vy7:DW (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    2749 1vy7:DW (2.8) BS03 MG ? GO:0003735 ... Q5SHP3 25132179
    2750 1vzm:A (1.4) BS01 MG ? GO:0005509 ... Q800Y1 15667217
    2751 1vzm:B (1.4) BS01 MG ? GO:0005509 ... Q800Y1 15667217
    2752 1vzm:B (1.4) BS02 MG ? GO:0005509 ... Q800Y1 15667217
    2753 1vzm:B (1.4) BS03 MG ? GO:0005509 ... Q800Y1 15667217
    2754 1vzm:C (1.4) BS01 MG ? GO:0005509 ... Q800Y1 15667217
    2755 1vzm:C (1.4) BS02 MG ? GO:0005509 ... Q800Y1 15667217
    2756 1vzm:C (1.4) BS03 MG ? GO:0005509 ... Q800Y1 15667217
    2757 1w0h:A (1.59) BS01 MG 3.1.-.- GO:0000175 ... Q8IV48 15451662
    2758 1w0h:A (1.59) BS02 MG 3.1.-.- GO:0000175 ... Q8IV48 15451662
    2759 1w0n:A (0.8) BS02 MG 3.2.1.55 GO:0030246 ... P45796 15242594
    2760 1w1w:A (2.9) BS01 MG ? GO:0005524 ... P32908 15383284
    2761 1w1w:B (2.9) BS02 MG ? GO:0005524 ... P32908 15383284
    2762 1w1w:C (2.9) BS01 MG ? GO:0005524 ... P32908 15383284
    2763 1w1w:D (2.9) BS02 MG ? GO:0005524 ... P32908 15383284
    2764 1w23:B (1.08) BS02 MG 2.6.1.52 GO:0004648 ... Q9RME2 15608117
    2765 1w25:A (2.7) BS01 MG 2.7.7.65 GO:0000160 ... B8GZM2 15569936 Manual survey: Ki=0.5uM (15569936)
    2766 1w25:B (2.7) BS01 MG 2.7.7.65 GO:0000160 ... B8GZM2 15569936 Manual survey: Ki=0.5uM (15569936)
    2767 1w2b:2 (3.5) BS02 MG ? GO:0000049 ... P32411 15334087
    2768 1w2b:S (3.5) BS02 MG ? GO:0002181 ... P10972 15334087
    2769 1w2b:X (3.5) BS02 MG ? GO:0000166 ... P12736 15334087
    2770 1w2y:A (1.65) BS02 MG 3.6.1.23 GO:0004170 ... Q0P8G4 15364583
    2771 1w2y:A (1.65) BS03 MG 3.6.1.23 GO:0004170 ... Q0P8G4 15364583
    2772 1w2y:A (1.65) BS04 MG 3.6.1.23 GO:0004170 ... Q0P8G4 15364583
    2773 1w2y:B (1.65) BS03 MG 3.6.1.23 GO:0004170 ... Q0P8G4 15364583
    2774 1w2y:B (1.65) BS04 MG 3.6.1.23 GO:0004170 ... Q0P8G4 15364583
    2775 1w2y:B (1.65) BS05 MG 3.6.1.23 GO:0004170 ... Q0P8G4 15364583
    2776 1w6r:A (2.05) BS02 MG 3.1.1.7 GO:0001507 ... P04058 15563167
    2777 1w6t:A (2.1) BS01 MG 4.2.1.11 GO:0000015 ... Q97QS2 15476816
    2778 1w6t:B (2.1) BS01 MG 4.2.1.11 GO:0000015 ... Q97QS2 15476816
    2779 1w78:A (1.82) BS02 MG 6.3.2.12
    6.3.2.17    		 GO:0004326 ... P08192 15705579
    2780 1w79:A (1.8) BS01 MG 3.4.16.4 GO:0000270 ... P39045 15987687
    2781 1w7j:A (2.0) BS01 MG ? GO:0003774 ... Q02440 15510214
    2782 1w7k:A (2.1) BS02 MG 6.3.2.12
    6.3.2.17    		 GO:0004326 ... P08192 15705579
    2783 1w7v:A (2.0) BS03 MG 3.4.11.9 GO:0004177 ... P15034 16229471
    2784 1w7v:B (2.0) BS03 MG 3.4.11.9 GO:0004177 ... P15034 16229471
    2785 1w7v:C (2.0) BS03 MG 3.4.11.9 GO:0004177 ... P15034 16229471
    2786 1w7v:D (2.0) BS03 MG 3.4.11.9 GO:0004177 ... P15034 16229471
    2787 1w85:A (2.0) BS01 MG 1.2.4.1 GO:0004739 ... P21873 15514159
    2788 1w85:C (2.0) BS01 MG 1.2.4.1 GO:0004739 ... P21873 15514159
    2789 1w85:E (2.0) BS01 MG 1.2.4.1 GO:0004739 ... P21873 15514159
    2790 1w85:G (2.0) BS01 MG 1.2.4.1 GO:0004739 ... P21873 15514159
    2791 1w85:J (2.0) BS01 MG 2.3.1.12 GO:0016746 ... P11961 15514159
    2792 1w88:A (2.3) BS01 MG 1.2.4.1 GO:0004739 ... P21873 15514159
    2793 1w88:C (2.3) BS01 MG 1.2.4.1 GO:0004739 ... P21873 15514159
    2794 1w88:E (2.3) BS01 MG 1.2.4.1 GO:0004739 ... P21873 15514159
    2795 1w8y:A (2.4) BS01 MG 3.4.16.4 GO:0000270 ... P39045 15987687
    2796 1w8y:D (2.4) BS01 MG 3.4.16.4 GO:0000270 ... P39045 15987687
    2797 1w9i:A (1.75) BS01 MG 3.6.4.1 GO:0003774 ... P08799 N/A
    2798 1w9j:A (2.0) BS01 MG 3.6.4.1 GO:0003774 ... P08799 N/A
    2799 1w9k:A (2.05) BS01 MG 3.6.4.1 GO:0003774 ... P08799 N/A
    2800 1w9l:A (1.95) BS01 MG 3.6.4.1 GO:0003774 ... P08799 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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