Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2401 1vql:Y (2.3) BS02 MG ? GO:0000166 ... P12736 16285925
    2402 1vqm:A (2.3) BS02 MG ? GO:0002181 ... P20276 16285925
    2403 1vqm:A (2.3) BS03 MG ? GO:0002181 ... P20276 16285925
    2404 1vqm:T (2.3) BS02 MG ? GO:0002181 ... P10972 16285925
    2405 1vqm:Y (2.3) BS02 MG ? GO:0000166 ... P12736 16285925
    2406 1vqn:A (2.4) BS02 MG ? GO:0002181 ... P20276 16306996
    2407 1vqn:A (2.4) BS03 MG ? GO:0002181 ... P20276 16306996
    2408 1vqn:T (2.4) BS02 MG ? GO:0002181 ... P10972 16306996
    2409 1vqn:Y (2.4) BS02 MG ? GO:0000166 ... P12736 16306996
    2410 1vqo:A (2.2) BS02 MG ? GO:0002181 ... P20276 16285925
    2411 1vqo:A (2.2) BS03 MG ? GO:0002181 ... P20276 16285925
    2412 1vqo:T (2.2) BS02 MG ? GO:0002181 ... P10972 16285925
    2413 1vqo:Y (2.2) BS02 MG ? GO:0000166 ... P12736 16285925
    2414 1vqp:A (2.25) BS02 MG ? GO:0002181 ... P20276 16285925
    2415 1vqp:A (2.25) BS03 MG ? GO:0002181 ... P20276 16285925
    2416 1vqp:T (2.25) BS02 MG ? GO:0002181 ... P10972 16285925
    2417 1vqp:Y (2.25) BS02 MG ? GO:0000166 ... P12736 16285925
    2418 1vr0:A (2.49) BS01 MG 3.1.3.71 GO:0000287 ... Q97E82 16927339
    2419 1vr0:B (2.49) BS01 MG 3.1.3.71 GO:0000287 ... Q97E82 16927339
    2420 1vsd:A (1.7) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... O92956 8805516
    2421 1vtn:C (2.5) BS03 MG ? GO:0003700 ... P55318 8332212
    2422 1vvj:QF (3.44) BS02 MG ? GO:0003735 ... Q5SLP8 25128388
    2423 1vvj:QH (3.44) BS02 MG N/A GO:0003735 ... N/A 25128388
    2424 1vvj:QM (3.44) BS03 MG ? GO:0000049 ... P80377 25128388
    2425 1vvj:RD (3.44) BS03 MG ? GO:0002181 ... P60405 25128388
    2426 1vvj:XM (3.44) BS03 MG ? GO:0000049 ... P80377 25128388
    2427 1vvj:YD (3.44) BS02 MG ? GO:0002181 ... P60405 25128388
    2428 1vy4:AB (2.6) BS02 MG ? GO:0003735 ... P80371 25132179
    2429 1vy4:AE (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    2430 1vy4:AK (2.6) BS02 MG ? GO:0003735 ... P80376 25132179
    2431 1vy4:AL (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 25132179
    2432 1vy4:AM (2.6) BS04 MG ? GO:0000049 ... P80377 25132179
    2433 1vy4:AT (2.6) BS02 MG ? GO:0003723 ... P80380 25132179
    2434 1vy4:B0 (2.6) BS03 MG ? GO:0003735 ... P60493 25132179
    2435 1vy4:B5 (2.6) BS02 MG ? GO:0003735 ... P80339 25132179
    2436 1vy4:B7 (2.6) BS02 MG ? GO:0003735 ... P80340 25132179
    2437 1vy4:B7 (2.6) BS03 MG ? GO:0003735 ... P80340 25132179
    2438 1vy4:B7 (2.6) BS04 MG ? GO:0003735 ... P80340 25132179
    2439 1vy4:B8 (2.6) BS02 MG ? GO:0003735 ... Q5SKU1 25132179
    2440 1vy4:BD (2.6) BS03 MG ? GO:0002181 ... P60405 25132179
    2441 1vy4:BD (2.6) BS04 MG ? GO:0002181 ... P60405 25132179
    2442 1vy4:BD (2.6) BS05 MG ? GO:0002181 ... P60405 25132179
    2443 1vy4:BD (2.6) BS06 MG ? GO:0002181 ... P60405 25132179
    2444 1vy4:BD (2.6) BS07 MG ? GO:0002181 ... P60405 25132179
    2445 1vy4:BD (2.6) BS08 MG ? GO:0002181 ... P60405 25132179
    2446 1vy4:BD (2.6) BS09 MG ? GO:0002181 ... P60405 25132179
    2447 1vy4:BD (2.6) BS10 MG ? GO:0002181 ... P60405 25132179
    2448 1vy4:BD (2.6) BS11 MG ? GO:0002181 ... P60405 25132179
    2449 1vy4:BD (2.6) BS12 MG ? GO:0002181 ... P60405 25132179
    2450 1vy4:BD (2.6) BS13 MG ? GO:0002181 ... P60405 25132179
    2451 1vy4:BE (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    2452 1vy4:BF (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    2453 1vy4:BF (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    2454 1vy4:BF (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 25132179
    2455 1vy4:BF (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 25132179
    2456 1vy4:BF (2.6) BS06 MG ? GO:0003735 ... Q5SHN9 25132179
    2457 1vy4:BF (2.6) BS07 MG ? GO:0003735 ... Q5SHN9 25132179
    2458 1vy4:BF (2.6) BS08 MG ? GO:0003735 ... Q5SHN9 25132179
    2459 1vy4:BF (2.6) BS09 MG ? GO:0003735 ... Q5SHN9 25132179
    2460 1vy4:BG (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 25132179
    2461 1vy4:BG (2.6) BS05 MG ? GO:0000049 ... Q5SHQ0 25132179
    2462 1vy4:BH (2.6) BS02 MG ? GO:0002181 ... P0DOY8 25132179
    2463 1vy4:BN (2.6) BS02 MG ? GO:0003729 ... P60488 25132179
    2464 1vy4:BP (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    2465 1vy4:BP (2.6) BS03 MG ? GO:0003735 ... Q5SHQ7 25132179
    2466 1vy4:BQ (2.6) BS04 MG ? GO:0000049 ... P60489 25132179
    2467 1vy4:BQ (2.6) BS05 MG ? GO:0000049 ... P60489 25132179
    2468 1vy4:BR (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 25132179
    2469 1vy4:BR (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 25132179
    2470 1vy4:BU (2.6) BS02 MG ? GO:0000027 ... P60491 25132179
    2471 1vy4:BU (2.6) BS03 MG ? GO:0000027 ... P60491 25132179
    2472 1vy4:BU (2.6) BS04 MG ? GO:0000027 ... P60491 25132179
    2473 1vy4:BU (2.6) BS05 MG ? GO:0000027 ... P60491 25132179
    2474 1vy4:BU (2.6) BS06 MG ? GO:0000027 ... P60491 25132179
    2475 1vy4:BV (2.6) BS02 MG ? GO:0003723 ... P60492 25132179
    2476 1vy4:BV (2.6) BS03 MG ? GO:0003723 ... P60492 25132179
    2477 1vy4:BV (2.6) BS04 MG ? GO:0003723 ... P60492 25132179
    2478 1vy4:BV (2.6) BS05 MG ? GO:0003723 ... P60492 25132179
    2479 1vy4:BW (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    2480 1vy4:BX (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 25132179
    2481 1vy4:CE (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    2482 1vy4:CF (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 25132179
    2483 1vy4:CJ (2.6) BS02 MG ? GO:0000049 ... Q5SHN7 25132179
    2484 1vy4:CL (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 25132179
    2485 1vy4:CT (2.6) BS02 MG ? GO:0003723 ... P80380 25132179
    2486 1vy4:D3 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 25132179
    2487 1vy4:DD (2.6) BS03 MG ? GO:0002181 ... P60405 25132179
    2488 1vy4:DD (2.6) BS04 MG ? GO:0002181 ... P60405 25132179
    2489 1vy4:DD (2.6) BS05 MG ? GO:0002181 ... P60405 25132179
    2490 1vy4:DE (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    2491 1vy4:DE (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 25132179
    2492 1vy4:DF (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    2493 1vy4:DF (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    2494 1vy4:DG (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 25132179
    2495 1vy4:DQ (2.6) BS04 MG ? GO:0000049 ... P60489 25132179
    2496 1vy4:DQ (2.6) BS05 MG ? GO:0000049 ... P60489 25132179
    2497 1vy4:DU (2.6) BS02 MG ? GO:0000027 ... P60491 25132179
    2498 1vy4:DU (2.6) BS03 MG ? GO:0000027 ... P60491 25132179
    2499 1vy4:DV (2.6) BS02 MG ? GO:0003723 ... P60492 25132179
    2500 1vy4:DV (2.6) BS03 MG ? GO:0003723 ... P60492 25132179
    2501 1vy4:DW (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    2502 1vy5:AE (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    2503 1vy5:AE (2.55) BS03 MG ? GO:0003723 ... Q5SHQ5 25132179
    2504 1vy5:AK (2.55) BS02 MG ? GO:0003735 ... P80376 25132179
    2505 1vy5:AL (2.55) BS02 MG ? GO:0000049 ... Q5SHN3 25132179
    2506 1vy5:AM (2.55) BS04 MG ? GO:0000049 ... P80377 25132179
    2507 1vy5:B0 (2.55) BS03 MG ? GO:0003735 ... P60493 25132179
    2508 1vy5:B1 (2.55) BS03 MG ? GO:0003735 ... P60494 25132179
    2509 1vy5:B3 (2.55) BS03 MG ? GO:0003735 ... Q5SHQ6 25132179
    2510 1vy5:B3 (2.55) BS04 MG ? GO:0003735 ... Q5SHQ6 25132179
    2511 1vy5:B5 (2.55) BS02 MG ? GO:0003735 ... P80339 25132179
    2512 1vy5:B5 (2.55) BS03 MG ? GO:0003735 ... P80339 25132179
    2513 1vy5:B6 (2.55) BS02 MG ? GO:0000049 ... P35871 25132179
    2514 1vy5:B7 (2.55) BS02 MG ? GO:0003735 ... P80340 25132179
    2515 1vy5:B7 (2.55) BS03 MG ? GO:0003735 ... P80340 25132179
    2516 1vy5:B7 (2.55) BS04 MG ? GO:0003735 ... P80340 25132179
    2517 1vy5:B7 (2.55) BS05 MG ? GO:0003735 ... P80340 25132179
    2518 1vy5:B8 (2.55) BS02 MG ? GO:0003735 ... Q5SKU1 25132179
    2519 1vy5:B8 (2.55) BS03 MG ? GO:0003735 ... Q5SKU1 25132179
    2520 1vy5:BD (2.55) BS03 MG ? GO:0002181 ... P60405 25132179
    2521 1vy5:BD (2.55) BS04 MG ? GO:0002181 ... P60405 25132179
    2522 1vy5:BD (2.55) BS05 MG ? GO:0002181 ... P60405 25132179
    2523 1vy5:BD (2.55) BS06 MG ? GO:0002181 ... P60405 25132179
    2524 1vy5:BD (2.55) BS07 MG ? GO:0002181 ... P60405 25132179
    2525 1vy5:BD (2.55) BS08 MG ? GO:0002181 ... P60405 25132179
    2526 1vy5:BD (2.55) BS09 MG ? GO:0002181 ... P60405 25132179
    2527 1vy5:BD (2.55) BS10 MG ? GO:0002181 ... P60405 25132179
    2528 1vy5:BD (2.55) BS11 MG ? GO:0002181 ... P60405 25132179
    2529 1vy5:BE (2.55) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    2530 1vy5:BE (2.55) BS03 MG ? GO:0003735 ... Q5SHN8 25132179
    2531 1vy5:BE (2.55) BS04 MG ? GO:0003735 ... Q5SHN8 25132179
    2532 1vy5:BF (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    2533 1vy5:BF (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    2534 1vy5:BF (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 25132179
    2535 1vy5:BF (2.55) BS05 MG ? GO:0003735 ... Q5SHN9 25132179
    2536 1vy5:BF (2.55) BS06 MG ? GO:0003735 ... Q5SHN9 25132179
    2537 1vy5:BF (2.55) BS07 MG ? GO:0003735 ... Q5SHN9 25132179
    2538 1vy5:BF (2.55) BS08 MG ? GO:0003735 ... Q5SHN9 25132179
    2539 1vy5:BF (2.55) BS09 MG ? GO:0003735 ... Q5SHN9 25132179
    2540 1vy5:BF (2.55) BS10 MG ? GO:0003735 ... Q5SHN9 25132179
    2541 1vy5:BG (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 25132179
    2542 1vy5:BG (2.55) BS05 MG ? GO:0000049 ... Q5SHQ0 25132179
    2543 1vy5:BN (2.55) BS02 MG ? GO:0003729 ... P60488 25132179
    2544 1vy5:BN (2.55) BS03 MG ? GO:0003729 ... P60488 25132179
    2545 1vy5:BN (2.55) BS04 MG ? GO:0003729 ... P60488 25132179
    2546 1vy5:BP (2.55) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    2547 1vy5:BP (2.55) BS03 MG ? GO:0003735 ... Q5SHQ7 25132179
    2548 1vy5:BQ (2.55) BS04 MG ? GO:0000049 ... P60489 25132179
    2549 1vy5:BQ (2.55) BS05 MG ? GO:0000049 ... P60489 25132179
    2550 1vy5:BQ (2.55) BS06 MG ? GO:0000049 ... P60489 25132179
    2551 1vy5:BQ (2.55) BS07 MG ? GO:0000049 ... P60489 25132179
    2552 1vy5:BR (2.55) BS02 MG ? GO:0003735 ... Q9Z9H5 25132179
    2553 1vy5:BR (2.55) BS03 MG ? GO:0003735 ... Q9Z9H5 25132179
    2554 1vy5:BU (2.55) BS02 MG ? GO:0000027 ... P60491 25132179
    2555 1vy5:BU (2.55) BS03 MG ? GO:0000027 ... P60491 25132179
    2556 1vy5:BU (2.55) BS04 MG ? GO:0000027 ... P60491 25132179
    2557 1vy5:BU (2.55) BS05 MG ? GO:0000027 ... P60491 25132179
    2558 1vy5:BU (2.55) BS06 MG ? GO:0000027 ... P60491 25132179
    2559 1vy5:BU (2.55) BS07 MG ? GO:0000027 ... P60491 25132179
    2560 1vy5:BU (2.55) BS08 MG ? GO:0000027 ... P60491 25132179
    2561 1vy5:BV (2.55) BS02 MG ? GO:0003723 ... P60492 25132179
    2562 1vy5:BV (2.55) BS03 MG ? GO:0003723 ... P60492 25132179
    2563 1vy5:BV (2.55) BS04 MG ? GO:0003723 ... P60492 25132179
    2564 1vy5:BV (2.55) BS05 MG ? GO:0003723 ... P60492 25132179
    2565 1vy5:BV (2.55) BS06 MG ? GO:0003723 ... P60492 25132179
    2566 1vy5:BW (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    2567 1vy5:BW (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 25132179
    2568 1vy5:BW (2.55) BS04 MG ? GO:0003735 ... Q5SHP3 25132179
    2569 1vy5:BX (2.55) BS02 MG ? GO:0000027 ... Q5SHP0 25132179
    2570 1vy5:BX (2.55) BS03 MG ? GO:0000027 ... Q5SHP0 25132179
    2571 1vy5:CE (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    2572 1vy5:CF (2.55) BS02 MG ? GO:0003735 ... Q5SLP8 25132179
    2573 1vy5:CK (2.55) BS02 MG ? GO:0003735 ... P80376 25132179
    2574 1vy5:CT (2.55) BS02 MG ? GO:0003723 ... P80380 25132179
    2575 1vy5:DD (2.55) BS03 MG ? GO:0002181 ... P60405 25132179
    2576 1vy5:DD (2.55) BS04 MG ? GO:0002181 ... P60405 25132179
    2577 1vy5:DD (2.55) BS05 MG ? GO:0002181 ... P60405 25132179
    2578 1vy5:DD (2.55) BS06 MG ? GO:0002181 ... P60405 25132179
    2579 1vy5:DD (2.55) BS07 MG ? GO:0002181 ... P60405 25132179
    2580 1vy5:DD (2.55) BS08 MG ? GO:0002181 ... P60405 25132179
    2581 1vy5:DE (2.55) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    2582 1vy5:DF (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    2583 1vy5:DF (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    2584 1vy5:DF (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 25132179
    2585 1vy5:DF (2.55) BS05 MG ? GO:0003735 ... Q5SHN9 25132179
    2586 1vy5:DG (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 25132179
    2587 1vy5:DP (2.55) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    2588 1vy5:DQ (2.55) BS04 MG ? GO:0000049 ... P60489 25132179
    2589 1vy5:DQ (2.55) BS05 MG ? GO:0000049 ... P60489 25132179
    2590 1vy5:DQ (2.55) BS06 MG ? GO:0000049 ... P60489 25132179
    2591 1vy5:DU (2.55) BS02 MG ? GO:0000027 ... P60491 25132179
    2592 1vy5:DU (2.55) BS03 MG ? GO:0000027 ... P60491 25132179
    2593 1vy5:DU (2.55) BS04 MG ? GO:0000027 ... P60491 25132179
    2594 1vy5:DV (2.55) BS02 MG ? GO:0003723 ... P60492 25132179
    2595 1vy5:DV (2.55) BS03 MG ? GO:0003723 ... P60492 25132179
    2596 1vy5:DV (2.55) BS04 MG ? GO:0003723 ... P60492 25132179
    2597 1vy5:DW (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    2598 1vy5:DW (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 25132179
    2599 1vy6:AK (2.9) BS02 MG ? GO:0003735 ... P80376 25132179
    2600 1vy6:AL (2.9) BS02 MG ? GO:0000049 ... Q5SHN3 25132179
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218