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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2201 1tzn:d (4.3) BS01 MG ? N/A P58335 15326297
    2202 1tzn:e (4.3) BS01 MG ? N/A P58335 15326297
    2203 1tzn:f (4.3) BS01 MG ? N/A P58335 15326297
    2204 1tzn:g (4.3) BS01 MG ? N/A P58335 15326297
    2205 1tzn:h (4.3) BS01 MG ? N/A P58335 15326297
    2206 1tzn:i (4.3) BS01 MG ? N/A P58335 15326297
    2207 1tzn:j (4.3) BS01 MG ? N/A P58335 15326297
    2208 1tzn:k (4.3) BS01 MG ? N/A P58335 15326297
    2209 1tzn:l (4.3) BS01 MG ? N/A P58335 15326297
    2210 1tzn:m (4.3) BS01 MG ? N/A P58335 15326297
    2211 1tzn:o (4.3) BS01 MG ? N/A P58335 15326297
    2212 1tzz:A (1.86) BS01 MG 4.2.1.81 GO:0000287 ... Q89FH0 N/A
    2213 1tzz:B (1.86) BS01 MG 4.2.1.81 GO:0000287 ... Q89FH0 N/A
    2214 1u02:A (1.92) BS01 MG 3.1.3.12 GO:0000287 ... Q9HIW7 16815921
    2215 1u0h:A (2.9) BS01 MG 4.6.1.1 GO:0009190 ... P30803 15591060
    2216 1u0h:A (2.9) BS02 MG 4.6.1.1 GO:0009190 ... P30803 15591060
    2217 1u0h:C (2.9) BS01 MG ? GO:0003924 ... P04896 15591060
    2218 1u2s:A (2.5) BS02 MG 3.1.3.24 GO:0000287 ... P74325 15937230
    2219 1u3c:A (2.6) BS01 MG ? GO:0009785 ... Q43125 15299148
    2220 1u3c:A (2.6) BS02 MG ? GO:0009785 ... Q43125 15299148
    2221 1u3d:A (2.45) BS01 MG ? GO:0009785 ... Q43125 15299148
    2222 1u3d:A (2.45) BS02 MG ? GO:0009785 ... Q43125 15299148
    2223 1u3d:A (2.45) BS03 MG ? GO:0009785 ... Q43125 15299148
    2224 1u3f:A (2.5) BS01 MG 6.3.3.2 GO:0005524 ... P75430 15281135
    2225 1u3f:B (2.5) BS01 MG 6.3.3.2 GO:0005524 ... P75430 15281135
    2226 1u3g:A (2.5) BS01 MG 6.3.3.2 GO:0005524 ... P75430 15281135
    2227 1u47:A (2.0) BS04 MG 2.7.7.7 GO:0003676 ... P52026 15322558
    2228 1u49:A (2.15) BS05 MG 2.7.7.7 GO:0003676 ... P52026 15322558
    2229 1u54:B (2.8) BS01 MG 2.7.10.2
    2.7.11.1    		 GO:0004672 ... Q07912 15308621
    2230 1u5r:A (2.1) BS01 MG 2.7.11.1 GO:0004672 ... Q9JLS3 15458637
    2231 1u5r:B (2.1) BS01 MG 2.7.11.1 GO:0004672 ... Q9JLS3 15458637
    2232 1u7p:A (1.9) BS01 MG 3.1.3.-
    3.1.3.48    		 GO:0004721 ... Q9D967 15461449
    2233 1u7p:B (1.9) BS01 MG 3.1.3.-
    3.1.3.48    		 GO:0004721 ... Q9D967 15461449
    2234 1u7p:C (1.9) BS01 MG 3.1.3.-
    3.1.3.48    		 GO:0004721 ... Q9D967 15461449
    2235 1u7p:D (1.9) BS01 MG 3.1.3.-
    3.1.3.48    		 GO:0004721 ... Q9D967 15461449
    2236 1u9i:A (2.8) BS01 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 15347809
    2237 1u9i:E (2.8) BS03 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 15347809
    2238 1u9i:F (2.8) BS03 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 15347809
    2239 1uad:A (2.1) BS01 MG 3.6.5.2 GO:0003924 ... P11233 12839989
    2240 1uad:B (2.1) BS01 MG 3.6.5.2 GO:0003924 ... P11233 12839989
    2241 1ubh:L (1.35) BS02 MG 1.12.2.1 GO:0008901 ... P21852 12296727
    2242 1ubj:L (1.35) BS02 MG 1.12.2.1 GO:0008901 ... P21852 12296727
    2243 1ubk:L (1.18) BS02 MG 1.12.2.1 GO:0008901 ... P21852 12296727
    2244 1ubl:L (1.2) BS02 MG 1.12.2.1 GO:0008901 ... P21852 12296727
    2245 1ubm:L (1.4) BS02 MG 1.12.2.1 GO:0008901 ... P21852 12296727
    2246 1ubo:L (1.35) BS02 MG 1.12.2.1 GO:0008901 ... P21852 12296727
    2247 1ubr:L (1.34) BS02 MG 1.12.2.1 GO:0008901 ... P21852 12296727
    2248 1ubt:L (1.34) BS02 MG 1.12.2.1 GO:0008901 ... P21852 12296727
    2249 1ubu:L (1.35) BS02 MG 1.12.2.1 GO:0008901 ... P21852 12296727
    2250 1ubw:A (2.5) BS01 MG 2.5.1.1
    2.5.1.10    		 GO:0004161 ... P08836 8986756
    2251 1ubw:A (2.5) BS02 MG 2.5.1.1
    2.5.1.10    		 GO:0004161 ... P08836 8986756
    2252 1ubx:A (2.5) BS01 MG 2.5.1.1
    2.5.1.10    		 GO:0004161 ... P08836 8986756
    2253 1uby:A (2.4) BS01 MG 2.5.1.1
    2.5.1.10    		 GO:0004161 ... P08836 8986756
    2254 1uby:A (2.4) BS02 MG 2.5.1.1
    2.5.1.10    		 GO:0004161 ... P08836 8986756
    2255 1udu:B (2.83) BS02 MG 3.1.4.35 GO:0004114 ... O76074 12955149
    2256 1uet:A (2.0) BS01 MG 2.7.7.72 GO:0000049 ... O28126 14592988
    2257 1ueu:A (2.0) BS01 MG 2.7.7.72 GO:0000049 ... O28126 14592988
    2258 1ueu:A (2.0) BS02 MG 2.7.7.72 GO:0000049 ... O28126 14592988
    2259 1uev:A (2.7) BS01 MG 2.7.7.72 GO:0000049 ... O28126 14592988
    2260 1ul1:X (2.9) BS01 MG 3.1.-.- GO:0000287 ... P39748 15616578
    2261 1ul1:X (2.9) BS02 MG 3.1.-.- GO:0000287 ... P39748 15616578
    2262 1umb:A (2.1) BS01 MG 1.2.4.4 GO:0003863 ... Q5SLR4 15033367
    2263 1umb:C (2.1) BS01 MG 1.2.4.4 GO:0003863 ... Q5SLR4 15033367
    2264 1umc:A (2.4) BS01 MG 1.2.4.4 GO:0003863 ... Q5SLR4 15033367
    2265 1umc:C (2.4) BS01 MG 1.2.4.4 GO:0003863 ... Q5SLR4 15033367
    2266 1umd:A (1.9) BS01 MG 1.2.4.4 GO:0003863 ... Q5SLR4 15033367
    2267 1umd:C (1.9) BS01 MG 1.2.4.4 GO:0003863 ... Q5SLR4 15033367
    2268 1umg:A (1.8) BS01 MG 3.1.3.11
    4.1.2.13    		 GO:0000287 ... F9VMT6 15274916
    2269 1umg:A (1.8) BS02 MG 3.1.3.11
    4.1.2.13    		 GO:0000287 ... F9VMT6 15274916
    2270 1umg:A (1.8) BS03 MG 3.1.3.11
    4.1.2.13    		 GO:0000287 ... F9VMT6 15274916
    2271 1un6:C (3.1) BS06 MG ? N/A P03001 14603324
    2272 1un9:A (3.1) BS02 MG 2.7.1.29 GO:0004371 ... P45510 12966101
    2273 1un9:A (3.1) BS03 MG 2.7.1.29 GO:0004371 ... P45510 12966101
    2274 1un9:B (3.1) BS02 MG 2.7.1.29 GO:0004371 ... P45510 12966101
    2275 1un9:B (3.1) BS03 MG 2.7.1.29 GO:0004371 ... P45510 12966101
    2276 1upa:A (2.35) BS02 MG 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    2277 1upa:B (2.35) BS03 MG 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    2278 1upa:C (2.35) BS02 MG 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    2279 1upa:D (2.35) BS02 MG 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    2280 1upb:A (2.35) BS02 MG 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    2281 1upb:B (2.35) BS03 MG 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    2282 1upb:C (2.35) BS02 MG 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    2283 1upb:D (2.35) BS02 MG 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    2284 1upc:A (2.45) BS02 MG 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    2285 1upc:B (2.45) BS03 MG 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    2286 1upc:C (2.45) BS02 MG 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    2287 1upc:D (2.45) BS03 MG 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    2288 1upc:E (2.45) BS02 MG 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    2289 1upc:F (2.45) BS02 MG 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    2290 1upt:A (1.7) BS02 MG ? GO:0000139 ... P40616 14580338
    2291 1upt:C (1.7) BS02 MG ? GO:0000139 ... P40616 14580338
    2292 1upt:E (1.7) BS02 MG ? GO:0000139 ... P40616 14580338
    2293 1upt:G (1.7) BS02 MG ? GO:0000139 ... P40616 14580338
    2294 1urb:A (2.14) BS02 MG 3.1.3.1 GO:0000287 ... P00634 8648634
    2295 1urb:B (2.14) BS02 MG 3.1.3.1 GO:0000287 ... P00634 8648634
    2296 1uut:A (2.0) BS02 MG ? N/A Q9YJC1 14967147
    2297 1uut:B (2.0) BS02 MG ? N/A Q9YJC1 14967147
    2298 1uw9:A (2.05) BS01 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    2299 1uw9:B (2.05) BS02 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    2300 1uw9:E (2.05) BS01 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    2301 1uw9:H (2.05) BS01 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    2302 1uw9:K (2.05) BS02 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    2303 1uw9:O (2.05) BS02 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    2304 1uw9:R (2.05) BS03 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    2305 1uw9:V (2.05) BS03 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    2306 1uwa:A (2.3) BS01 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    2307 1uwa:B (2.3) BS01 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    2308 1uwa:E (2.3) BS02 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    2309 1uwa:H (2.3) BS01 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    2310 1uwa:K (2.3) BS01 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    2311 1uwa:O (2.3) BS02 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    2312 1uwa:R (2.3) BS02 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    2313 1uwa:V (2.3) BS02 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    2314 1uzd:A (2.4) BS01 MG 4.1.1.39 GO:0000287 ... P00877 16026157
    2315 1uzd:B (2.4) BS02 MG 4.1.1.39 GO:0000287 ... P00877 16026157
    2316 1uzd:E (2.4) BS01 MG 4.1.1.39 GO:0000287 ... P00877 16026157
    2317 1uzd:H (2.4) BS01 MG 4.1.1.39 GO:0000287 ... P00877 16026157
    2318 1uzd:K (2.4) BS02 MG 4.1.1.39 GO:0000287 ... P00877 16026157
    2319 1uzd:O (2.4) BS01 MG 4.1.1.39 GO:0000287 ... P00877 16026157
    2320 1uzd:R (2.4) BS02 MG 4.1.1.39 GO:0000287 ... P00877 16026157
    2321 1uzd:V (2.4) BS02 MG 4.1.1.39 GO:0000287 ... P00877 16026157
    2322 1uzh:A (2.2) BS01 MG 4.1.1.39 GO:0000287 ... P00877 16026157
    2323 1uzh:B (2.2) BS02 MG 4.1.1.39 GO:0000287 ... P00877 16026157
    2324 1uzh:E (2.2) BS01 MG 4.1.1.39 GO:0000287 ... P00877 16026157
    2325 1uzh:H (2.2) BS01 MG 4.1.1.39 GO:0000287 ... P00877 16026157
    2326 1uzh:K (2.2) BS02 MG 4.1.1.39 GO:0000287 ... P00877 16026157
    2327 1uzh:O (2.2) BS01 MG 4.1.1.39 GO:0000287 ... P00877 16026157
    2328 1uzh:R (2.2) BS02 MG 4.1.1.39 GO:0000287 ... P00877 16026157
    2329 1uzh:V (2.2) BS02 MG 4.1.1.39 GO:0000287 ... P00877 16026157
    2330 1v0d:A (2.6) BS02 MG 3.-.-.- GO:0000785 ... O54788 15149602
    2331 1v14:C (2.9) BS05 MG 3.1.-.- GO:0004519 ... P09883 15190054
    2332 1v25:A (2.3) BS01 MG 6.2.1.3 GO:0000287 ... Q5SKN9 15145952
    2333 1v25:B (2.3) BS01 MG 6.2.1.3 GO:0000287 ... Q5SKN9 15145952
    2334 1v26:A (2.5) BS01 MG 6.2.1.3 GO:0000287 ... Q5SKN9 15145952
    2335 1v26:B (2.5) BS01 MG 6.2.1.3 GO:0000287 ... Q5SKN9 15145952
    2336 1v54:A (1.8) BS02 MG 7.1.1.9 GO:0004129 ... P00396 14673090
    2337 1v54:N (1.8) BS02 MG 7.1.1.9 GO:0004129 ... P00396 14673090
    2338 1v55:A (1.9) BS02 MG 7.1.1.9 GO:0004129 ... P00396 14673090
    2339 1v55:N (1.9) BS02 MG 7.1.1.9 GO:0004129 ... P00396 14673090
    2340 1v5f:A (1.8) BS01 MG N/A GO:0000287 ... N/A 18007037
    2341 1v5g:A (1.96) BS01 MG N/A GO:0000287 ... N/A 18007037
    2342 1v71:A (1.7) BS01 MG 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... O59791 N/A
    2343 1v8s:A (2.2) BS01 MG 3.6.1.13 GO:0000166 ... Q84CU3 15210687
    2344 1v8v:A (1.97) BS01 MG 3.6.1.13 GO:0000166 ... Q84CU3 15210687
    2345 1v98:A (1.82) BS01 MG 1.8.1.9 GO:0005737 ... Q5SI93 N/A
    2346 1v98:B (1.82) BS01 MG 1.8.1.9 GO:0005737 ... Q5SI93 N/A
    2347 1va6:A (2.1) BS01 MG 6.3.2.2 GO:0003824 ... P0A6W9 15477603
    2348 1va6:A (2.1) BS02 MG 6.3.2.2 GO:0003824 ... P0A6W9 15477603
    2349 1va6:A (2.1) BS03 MG 6.3.2.2 GO:0003824 ... P0A6W9 15477603
    2350 1va6:B (2.1) BS01 MG 6.3.2.2 GO:0003824 ... P0A6W9 15477603
    2351 1va6:B (2.1) BS02 MG 6.3.2.2 GO:0003824 ... P0A6W9 15477603
    2352 1va6:B (2.1) BS03 MG 6.3.2.2 GO:0003824 ... P0A6W9 15477603
    2353 1vbg:A (2.3) BS01 MG 2.7.9.1 GO:0003824 ... P11155 15667207
    2354 1vbh:A (2.3) BS01 MG 2.7.9.1 GO:0003824 ... P11155 15667207
    2355 1vc9:A (2.3) BS01 MG 3.6.1.61 GO:0004081 ... Q75UV1 N/A
    2356 1vcl:A (1.7) BS06 MG ? GO:0000287 ... Q868M7 15194688
    2357 1vcl:A (1.7) BS07 MG ? GO:0000287 ... Q868M7 15194688
    2358 1vcl:B (1.7) BS06 MG ? GO:0000287 ... Q868M7 15194688
    2359 1vcl:B (1.7) BS07 MG ? GO:0000287 ... Q868M7 15194688
    2360 1vfp:A (2.9) BS03 MG 7.2.2.10 GO:0000166 ... P04191 15229613
    2361 1vfp:B (2.9) BS03 MG 7.2.2.10 GO:0000166 ... P04191 15229613
    2362 1vg8:A (1.7) BS01 MG 3.6.5.2 GO:0000045 ... P09527 15186776
    2363 1vg8:B (1.7) BS01 MG 3.6.5.2 GO:0000045 ... P09527 15186776
    2364 1vg8:C (1.7) BS01 MG 3.6.5.2 GO:0000045 ... P09527 15186776
    2365 1vg8:D (1.7) BS01 MG 3.6.5.2 GO:0000045 ... P09527 15186776
    2366 1vid:A (2.0) BS01 MG 2.1.1.6 GO:0000287 ... P22734 8127373
    2367 1vj5:A (2.35) BS01 MG 3.1.3.76
    3.3.2.10    		 GO:0000287 ... P34913 15096040
    2368 1vkp:A (1.53) BS01 MG 3.5.3.12 GO:0004668 ... Q8GWW7 N/A
    2369 1vkp:B (1.53) BS01 MG 3.5.3.12 GO:0004668 ... Q8GWW7 N/A
    2370 1vlb:A (1.28) BS01 MG 1.2.99.7 GO:0005506 ... Q46509 11713686
    2371 1vm9:A (1.48) BS01 MG ? GO:0009056 ... Q00458 16627939
    2372 1vom:A (1.9) BS01 MG ? GO:0003774 ... P08799 8611530
    2373 1vq4:3 (2.7) BS02 MG ? GO:0000049 ... P32411 16285925
    2374 1vq4:A (2.7) BS02 MG ? GO:0002181 ... P20276 16285925
    2375 1vq4:T (2.7) BS02 MG ? GO:0002181 ... P10972 16285925
    2376 1vq4:Y (2.7) BS02 MG ? GO:0000166 ... P12736 16285925
    2377 1vq5:3 (2.6) BS02 MG ? GO:0000049 ... P32411 16285925
    2378 1vq5:A (2.6) BS02 MG ? GO:0002181 ... P20276 16285925
    2379 1vq5:T (2.6) BS02 MG ? GO:0002181 ... P10972 16285925
    2380 1vq5:Y (2.6) BS02 MG ? GO:0000166 ... P12736 16285925
    2381 1vq6:3 (2.7) BS02 MG ? GO:0000049 ... P32411 16306996
    2382 1vq6:A (2.7) BS02 MG ? GO:0002181 ... P20276 16306996
    2383 1vq6:T (2.7) BS02 MG ? GO:0002181 ... P10972 16306996
    2384 1vq6:Y (2.7) BS02 MG ? GO:0000166 ... P12736 16306996
    2385 1vq7:3 (2.5) BS02 MG ? GO:0000049 ... P32411 16306996
    2386 1vq7:T (2.5) BS02 MG ? GO:0002181 ... P10972 16306996
    2387 1vq7:Y (2.5) BS02 MG ? GO:0000166 ... P12736 16306996
    2388 1vq8:A (2.2) BS02 MG ? GO:0002181 ... P20276 16285925
    2389 1vq8:T (2.2) BS02 MG ? GO:0002181 ... P10972 16285925
    2390 1vq8:Y (2.2) BS02 MG ? GO:0000166 ... P12736 16285925
    2391 1vq9:A (2.4) BS02 MG ? GO:0002181 ... P20276 16285925
    2392 1vq9:T (2.4) BS02 MG ? GO:0002181 ... P10972 16285925
    2393 1vq9:Y (2.4) BS02 MG ? GO:0000166 ... P12736 16285925
    2394 1vqk:A (2.3) BS02 MG ? GO:0002181 ... P20276 16285925
    2395 1vqk:A (2.3) BS03 MG ? GO:0002181 ... P20276 16285925
    2396 1vqk:T (2.3) BS02 MG ? GO:0002181 ... P10972 16285925
    2397 1vqk:Y (2.3) BS02 MG ? GO:0000166 ... P12736 16285925
    2398 1vql:A (2.3) BS02 MG ? GO:0002181 ... P20276 16285925
    2399 1vql:A (2.3) BS03 MG ? GO:0002181 ... P20276 16285925
    2400 1vql:T (2.3) BS02 MG ? GO:0002181 ... P10972 16285925
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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