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BioLiP
Download all results in tab-seperated text for 327 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 5inx:B (1.681) BS01 MET N/A GO:0006508 ... N/A N/A
    202 5inx:C (1.681) BS01 MET N/A GO:0006508 ... N/A N/A
    203 5inx:D (1.681) BS01 MET N/A GO:0006508 ... N/A N/A
    204 5inx:E (1.681) BS01 MET N/A GO:0006508 ... N/A N/A
    205 5j58:A (2.8) BS01 MET 6.1.1.10 GO:0000166 ... Q38C91 27788467
    206 5j59:A (2.4) BS01 MET 6.1.1.10 GO:0000166 ... Q38C91 27788467
    207 5j5a:A (2.7) BS01 MET 6.1.1.10 GO:0000166 ... Q38C91 27788467
    208 5jb3:7 (5.34) BS03 MET 3.6.5.3 GO:0000049 ... Q980A5 27819266
    209 5jbh:7 (5.34) BS02 MET 3.6.5.3 GO:0000049 ... Q980A5 27819266
    210 5ltx:A (2.02) BS01 MET ? N/A G3XD24 N/A
    211 5ltx:B (2.02) BS01 MET ? N/A G3XD24 N/A
    212 5nfh:A (2.8) BS01 MET 6.1.1.10 GO:0000166 ... Q38C91 28967262
    213 5th5:A (2.407) BS03 MET 4.3.99.3 GO:0000287 ... O31677 28045519
    214 5th5:B (2.407) BS03 MET 4.3.99.3 GO:0000287 ... O31677 28045519
    215 5th5:C (2.407) BS03 MET 4.3.99.3 GO:0000287 ... O31677 28045519
    216 5th5:D (2.407) BS03 MET 4.3.99.3 GO:0000287 ... O31677 28045519
    217 5tqu:A (2.6) BS01 MET 6.1.1.10 GO:0000166 ... Q38C91 28110521
    218 5tsu:A (2.2) BS01 MET 4.4.1.1
    4.4.1.2    		 GO:0004123 ... P32929 28106980
    219 5tu6:A (2.22) BS02 MET ? GO:0016740 ... F5B6Z0 27872314
    220 5urb:A (1.9) BS02 MET 6.1.1.10 GO:0000166 ... A0A0D5YKJ7 N/A
    221 5urb:B (1.9) BS02 MET 6.1.1.10 GO:0000166 ... A0A0D5YKJ7 N/A
    222 5v1t:A (2.1) BS05 MET ? GO:0003824 ... A0A0Z8EWX1 28893989
    223 5v49:A (2.3) BS01 MET 6.1.1.10 GO:0000166 ... Q38C91 28465105
    224 5vsm:A (1.7) BS02 MET 4.2.-.- GO:0003824 ... Q8CBB9 28607080
    225 5vsm:B (1.7) BS02 MET 4.2.-.- GO:0003824 ... Q8CBB9 28607080
    226 5yoh:A (1.63) BS03 MET 3.4.11.18 GO:0004177 ... A5U6L5 N/A
    227 5yoi:A (1.63) BS03 MET 3.4.11.18 GO:0004177 ... A5U6L5 N/A
    228 5ypd:A (1.62) BS03 MET 3.4.11.18 GO:0004177 ... A5U6L5 30763644
    229 5yr7:A (2.06) BS03 MET 3.4.11.18 GO:0006508 ... P53582 N/A
    230 5yxf:A (1.61) BS03 MET 3.4.11.18 GO:0004177 ... A5U6L5 N/A
    231 6ahi:B (1.9) BS01 MET 2.5.1.47 GO:0004122 ... P56067 31132312 PDBbind: -logKd/Ki=3.60, Kd=252uM
    232 6bv4:A (2.02) BS01 MET 3.4.11.2 GO:0001525 ... P15145 28465619
    233 6cml:A (2.7) BS01 MET 6.1.1.10 GO:0000166 ... Q38C91 N/A
    234 6fd2:A (2.55) BS03 MET ? GO:0003824 ... Q2MFI7 29300094
    235 6fd2:B (2.55) BS03 MET ? GO:0003824 ... Q2MFI7 29300094
    236 6fyx:k (3.5) BS02 MET 3.6.5.3 GO:0000049 ... P32481 30475211
    237 6fyy:k (3.02) BS02 MET 3.6.5.3 GO:0000049 ... P32481 30475211
    238 6gsn:k (5.75) BS02 MET 3.6.5.3 GO:0000049 ... P32481 34648019
    239 6gyp:B (3.6) BS01 MET ? GO:0000775 ... P40969 30478265
    240 6htk:A (2.0) BS03 MET ? GO:0046872 ... C6FX51 30418774
    241 6htk:B (2.0) BS03 MET ? GO:0046872 ... C6FX51 30418774
    242 6htm:A (1.7) BS03 MET ? GO:0046872 ... C6FX51 30418774
    243 6htm:B (1.7) BS03 MET ? GO:0046872 ... C6FX51 30418774
    244 6hto:A (1.45) BS02 MET ? GO:0046872 ... C6FX51 30418774
    245 6hto:B (1.45) BS02 MET ? GO:0046872 ... C6FX51 30418774
    246 6jf1:A (1.95) BS01 MET ? GO:0016020 ... A0A0H2UN92 31282873
    247 6kp1:A (2.19) BS02 MET 3.4.11.2 GO:0006508 ... Q9RVZ5 31923495
    248 6kp1:B (2.19) BS02 MET 3.4.11.2 GO:0006508 ... Q9RVZ5 31923495
    249 6mes:A (2.9) BS01 MET 6.1.1.10 GO:0000166 ... Q38C91 N/A
    250 6oja:A (1.55) BS01 MET ? GO:0016020 ... Q9JPG4 31348565 MOAD: Kd=0.2nM
    PDBbind: -logKd/Ki=9.70, Kd=0.2nM
    251 6oja:B (1.55) BS01 MET ? GO:0016020 ... Q9JPG4 31348565 MOAD: Kd=0.2nM
    252 6oja:C (1.55) BS01 MET ? GO:0016020 ... Q9JPG4 31348565 MOAD: Kd=0.2nM
    253 6oja:D (1.55) BS01 MET ? GO:0016020 ... Q9JPG4 31348565 MOAD: Kd=0.2nM
    254 6oja:E (1.55) BS01 MET ? GO:0016020 ... Q9JPG4 31348565 MOAD: Kd=0.2nM
    255 6oja:F (1.55) BS01 MET ? GO:0016020 ... Q9JPG4 31348565 MOAD: Kd=0.2nM
    256 6r8a:A (3.1) BS01 MET ? GO:0015276 ... Q9C8E7 31871183
    257 6r8a:B (3.1) BS01 MET ? GO:0015276 ... Q9C8E7 31871183
    258 6r8a:C (3.1) BS01 MET ? GO:0015276 ... Q9C8E7 31871183
    259 6r8a:D (3.1) BS01 MET ? GO:0015276 ... Q9C8E7 31871183
    260 6spo:A (1.2) BS02 MET 6.1.1.10 GO:0000166 ... P00959 31862305 MOAD: Kd=0.05mM
    261 6spq:A (1.38) BS02 MET 6.1.1.10 GO:0000166 ... P00959 31862305 MOAD: Kd=0.029mM
    262 6sw9:7 (4.2) BS03 MET 3.6.5.3 GO:0000049 ... Q980A5 32029867
    263 6swc:7 (3.3) BS02 MET 3.6.5.3 GO:0000049 ... Q980A5 32029867
    264 6swx:A (1.95) BS02 MET 6.1.1.10 GO:0000166 ... Q4QCD2 32275825
    265 6tdo:A (1.65) BS02 MET ? N/A F6IQS1 32161266
    266 6tdq:A (1.6) BS02 MET ? N/A F6IQS1 32161266
    267 6tdq:A (1.6) BS04 MET ? N/A F6IQS1 32161266
    268 6tdq:C (1.6) BS02 MET ? N/A F6IQS1 32161266
    269 6tdq:C (1.6) BS04 MET ? N/A F6IQS1 32161266
    270 6vd0:A (2.0) BS02 MET 2.5.1.6 GO:0004478 ... P17562 32057875
    271 6vd0:B (2.0) BS03 MET 2.5.1.6 GO:0004478 ... P17562 32057875
    272 6vd0:C (2.0) BS02 MET 2.5.1.6 GO:0004478 ... P17562 32057875
    273 6vd0:D (2.0) BS03 MET 2.5.1.6 GO:0004478 ... P17562 32057875
    274 6ve8:A (1.75) BS01 MET ? GO:0015276 ... Q93YT1 33027636
    275 6wkb:B (2.55) BS02 MET 2.5.1.6 GO:0004478 ... P31153 N/A
    276 6woo:1 (2.9) BS05 MET 3.6.5.3 GO:0003924 ... P39730 N/A
    277 6wq6:A (1.7) BS02 MET 6.1.1.10 GO:0000049 ... Q8PMP0 33857480
    278 6xi9:A (2.14) BS02 MET 2.5.1.120 GO:0003824 ... C6XW09 32627538
    279 6xi9:B (2.14) BS02 MET 2.5.1.120 GO:0003824 ... C6XW09 32627538
    280 7f1u:B (2.4) BS02 MET 4.4.1.11
    4.4.1.2    		 GO:0005737 ... P13254 34953671
    281 7kdx:A (1.791) BS03 MET ? GO:0003824 ... A0A6B9HEI0 35110734
    282 7kdx:B (1.791) BS03 MET ? GO:0003824 ... A0A6B9HEI0 35110734
    283 7kdy:A (1.939) BS03 MET ? GO:0003824 ... A0A6B9HEI0 35110734
    284 7kdy:B (1.939) BS03 MET ? GO:0003824 ... A0A6B9HEI0 35110734
    285 7lz2:A (1.5) BS01 MET ? GO:0015276 ... Q8GXJ4 34161757
    286 7lz2:B (1.5) BS01 MET ? GO:0015276 ... Q8GXJ4 34161757
    287 7lz2:C (1.5) BS01 MET ? GO:0015276 ... Q8GXJ4 34161757
    288 7mjw:A (1.4) BS03 MET 2.8.4.3 GO:0003824 ... A0A174NUT3 34526715
    289 7mjw:B (1.4) BS03 MET 2.8.4.3 GO:0003824 ... A0A174NUT3 34526715
    290 7mjx:A (1.5) BS04 MET 2.8.4.3 GO:0003824 ... A0A174NUT3 34526715
    291 7mjx:B (1.5) BS04 MET 2.8.4.3 GO:0003824 ... A0A174NUT3 34526715
    292 7o25:A (1.34) BS03 MET 1.8.-.- GO:0003824 ... Q9X0Z6 34048236
    293 7o26:A (1.5) BS02 MET 1.8.-.- GO:0003824 ... Q9X0Z6 34048236
    294 7pd1:A (1.27) BS02 MET ? GO:0003824 ... A1HPQ5 35477710
    295 7pd1:B (1.27) BS02 MET ? GO:0003824 ... A1HPQ5 35477710
    296 7pd2:A (1.99) BS02 MET ? GO:0003824 ... A1HPQ5 35477710
    297 7pd2:B (1.99) BS02 MET ? GO:0003824 ... A1HPQ5 35477710
    298 7rb3:A (3.1) BS02 MET 2.3.1.256 GO:0004596 ... Q147X3 36638802
    299 7tol:A (2.03) BS05 MET 2.1.1.- GO:0003824 ... Q58036 35882349
    300 7tom:A (1.85) BS05 MET 2.1.1.- GO:0003824 ... Q58036 35882349
    301 7ulz:A (2.8) BS01 MET 6.1.1.10 GO:0000166 ... Q9HYC7 N/A
    302 7vt5:A (1.46) BS02 MET 3.2.1.4 GO:0000272 ... A0A399DY85 35503211
    303 7vvx:B (2.51) BS02 MET ? GO:0008168 ... A0A0T5PCK9 35618717
    304 7wpk:A (2.8) BS01 MET 6.1.1.10 GO:0000166 ... Q5HII6 35474479
    305 7zag:7 (2.77) BS02 MET ? GO:0003743 ... Q9UZK7 35694843
    306 7zah:7 (2.7) BS03 MET ? GO:0003743 ... Q9UZK7 35694843
    307 7zki:7 (3.6) BS02 MET ? GO:0003743 ... Q9UZK7 35694843
    308 8cas:G (3.3) BS02 MET 3.6.5.3 GO:0000049 ... P32481 37169754
    309 8hzv:B (2.33002) BS01 MET N/A N/A Q9ZGH1 38943270
    310 8hzv:D (2.33002) BS01 MET N/A N/A Q9ZGH1 38943270
    311 8hzy:B (2.03979) BS01 MET N/A N/A Q9ZGH1 38943270
    312 8i93:B (3.1) BS01 MET ? GO:0003333 ... Q695T7 37684251
    313 8i93:D (3.1) BS01 MET ? GO:0003333 ... Q695T7 37684251
    314 8kho:A (1.45) BS01 MET 3.4.11.18 GO:0006508 ... Q6UB28 38102161
    315 8ppl:It (2.65) BS04 MET 3.6.5.3 GO:0000049 ... P41091 37802027
    316 8ptx:C (2.87) BS04 MET 2.3.1.311 GO:0000049 ... Q9H9T3 38750017
    317 8pty:C (3.58) BS02 MET 2.3.1.311 GO:0000049 ... Q9H9T3 38750017
    318 8ptz:C (3.35) BS04 MET 2.3.1.311 GO:0000049 ... Q9H9T3 38750017
    319 8pu0:C (4.25) BS04 MET 2.3.1.311 GO:0000049 ... Q9H9T3 38750017
    320 8rw1:k (3.35) BS03 MET N/A N/A P32481 39193907
    321 8s8d:k (3.45) BS03 MET N/A N/A P32481 39193907
    322 8s8e:k (3.85) BS03 MET N/A N/A P32481 39193907
    323 8s8f:k (3.95) BS03 MET N/A N/A P32481 39193907
    324 8s8g:k (4.0) BS02 MET N/A N/A P32481 39193907
    325 8s8h:k (4.0) BS02 MET N/A N/A P32481 39193907
    326 8s8i:k (4.3) BS02 MET N/A N/A P32481 39193907
    327 8s8j:k (4.7) BS03 MET N/A N/A P32481 39193907
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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