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BioLiP
Download all results in tab-seperated text for 42 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1h8y:A (2.0) BS01 MER 3.5.2.6 GO:0008658 ... Q51400 11453693 PDBbind: -logKd/Ki=7.70, IC50=0.02uM
    2 1h8y:B (2.0) BS01 MER 3.5.2.6 GO:0008658 ... Q51400 11453693 PDBbind: -logKd/Ki=7.70, IC50=0.02uM
    3 2zd8:A (1.05) BS03 MER 3.5.2.6 GO:0008800 ... P0AD64 18761444
    4 3bfg:A (2.0) BS01 MER 3.5.2.6 GO:0008800 ... Q93PQ0 N/A
    5 3bfg:B (2.0) BS01 MER 3.5.2.6 GO:0008800 ... Q93PQ0 N/A
    6 3bfg:C (2.0) BS01 MER 3.5.2.6 GO:0008800 ... Q93PQ0 N/A
    7 3bfg:D (2.0) BS01 MER 3.5.2.6 GO:0008800 ... Q93PQ0 N/A
    8 3pbr:A (1.95) BS01 MER 3.4.16.4 GO:0000917 ... G3XD46 21135211
    9 3q82:A (2.1) BS01 MER ? GO:0008658 ... P18357 21775440
    10 3q82:B (2.1) BS01 MER ? GO:0008658 ... P18357 21775440
    11 4ev4:A (1.3) BS01 MER 3.5.2.6 GO:0008800 ... Q6JP75 23030300
    12 4jf4:A (2.14) BS01 MER 3.5.2.6 GO:0008658 ... Q9L4P2 24012371
    13 4jf4:B (2.14) BS01 MER 3.5.2.6 GO:0008658 ... Q9L4P2 24012371
    14 4ppr:A (2.0) BS01 MER 3.4.16.- GO:0006508 ... O53380 25551456
    15 6dmh:A (1.3) BS01 MER 3.5.2.6 GO:0008800 ... Q6JP75 30457858
    16 6i1h:A (1.78) BS01 MER N/A GO:0008658 ... N/A N/A
    17 6i1h:B (1.78) BS01 MER N/A GO:0008658 ... N/A N/A
    18 6kgs:A (2.309) BS01 MER ? GO:0008658 ... L0T911 32086254
    19 6m5p:A (1.25) BS01 MER 3.5.2.6 GO:0000166 ... Q9XB24 32888908
    20 6pt1:A (2.0) BS01 MER 3.5.2.6 GO:0008658 ... Q6XEC0 31872762
    21 6pt1:B (2.0) BS01 MER 3.5.2.6 GO:0008658 ... Q6XEC0 31872762
    22 6pt1:C (2.0) BS01 MER 3.5.2.6 GO:0008658 ... Q6XEC0 31872762
    23 6pt1:D (2.0) BS01 MER 3.5.2.6 GO:0008658 ... Q6XEC0 31872762
    24 6skq:A (2.1) BS01 MER 3.5.2.6 GO:0008658 ... A0A386YIZ1 32683794
    25 6skq:B (2.1) BS01 MER 3.5.2.6 GO:0008658 ... A0A386YIZ1 32683794
    26 6skq:C (2.1) BS01 MER 3.5.2.6 GO:0008658 ... A0A386YIZ1 32683794
    27 6skq:D (2.1) BS01 MER 3.5.2.6 GO:0008658 ... A0A386YIZ1 32683794
    28 7khq:A (2.0) BS01 MER 3.5.2.6 GO:0008658 ... Q6XEC0 33492952
    29 7khq:B (2.0) BS01 MER 3.5.2.6 GO:0008658 ... Q6XEC0 33492952
    30 7khy:A (1.84) BS01 MER 3.5.2.6 GO:0008658 ... F6KZJ2 33492952
    31 7rpa:A (2.27) BS01 MER 3.5.2.6 GO:0008658 ... Q8RLA6 35709986
    32 7rpb:A (1.97) BS01 MER 3.5.2.6 GO:0008658 ... Q8RLA6 35709986
    33 7vvi:A (1.4) BS01 MER 3.5.2.6 GO:0008658 ... Q2TR58 N/A
    34 7vx3:A (1.8) BS01 MER 3.5.2.6 GO:0008658 ... Q2TR58 N/A
    35 7vx6:A (1.7) BS01 MER 3.5.2.6 GO:0008658 ... Q2TR58 N/A
    36 8iy4:A (2.0) BS01 MER 3.5.2.6 GO:0008800 ... Q01166 N/A
    37 8rlk:A (2.0) BS01 MER N/A N/A A0A1J0J3U4 39097051
    38 8rlk:B (2.0) BS01 MER N/A N/A A0A1J0J3U4 39097051
    39 8rlk:C (2.0) BS01 MER N/A N/A A0A1J0J3U4 39097051
    40 8rlk:D (2.0) BS01 MER N/A N/A A0A1J0J3U4 39097051
    41 8v9g:A (1.62) BS01 MER 3.5.2.6 GO:0008800 ... Q09HD0 38511828
    42 8v9g:B (1.62) BS01 MER 3.5.2.6 GO:0008800 ... Q09HD0 38511828
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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