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BioLiP
Download all results in tab-seperated text for 20 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3en1:A (3.2) BS03 MBN 1.14.12.11
    1.14.12.3    		 GO:0005506 ... A5W4F2 19153463
    2 4w53:A (1.56) BS01 MBN 3.2.1.17 GO:0003796 ... P00720 25847998 MOAD: Kd=102uM
    PDBbind: -logKd/Ki=3.99, Kd=102uM
    BindingDB: Kd=102000nM
    3 5bwe:A (3.3) BS02 MBN 4.1.99.11 GO:0003824 ... O68395 26224635
    4 5bwe:D (3.3) BS02 MBN 4.1.99.11 GO:0003824 ... O68395 26224635
    5 5hwv:A (1.65) BS01 MBN 2.7.13.3 N/A A5W4E3 26903514 MOAD: Kd=8.5uM
    PDBbind: -logKd/Ki=5.07, Kd=8.5uM
    6 5hwv:B (1.65) BS01 MBN 2.7.13.3 N/A A5W4E3 26903514 MOAD: Kd=8.5uM
    7 5tds:A (1.719) BS03 MBN 1.14.13.236 GO:0004497 ... Q00456 28346937
    8 5tds:A (1.719) BS04 MBN 1.14.13.236 GO:0004497 ... Q00456 28346937
    9 5tds:A (1.719) BS05 MBN 1.14.13.236 GO:0004497 ... Q00456 28346937
    10 5tds:A (1.719) BS06 MBN 1.14.13.236 GO:0004497 ... Q00456 28346937
    11 5tds:B (1.719) BS01 MBN 1.14.13.236 GO:0004497 ... Q00460 28346937
    12 5tds:D (1.719) BS04 MBN 1.14.13.236 GO:0004497 ... Q00456 28346937
    13 5tds:D (1.719) BS05 MBN 1.14.13.236 GO:0004497 ... Q00456 28346937
    14 5tds:D (1.719) BS06 MBN 1.14.13.236 GO:0004497 ... Q00456 28346937
    15 5tds:D (1.719) BS07 MBN 1.14.13.236 GO:0004497 ... Q00456 28346937
    16 5tdt:A (1.818) BS01 MBN 1.14.13.236 GO:0004497 ... Q00456 28346937
    17 5tdt:A (1.818) BS02 MBN 1.14.13.236 GO:0004497 ... Q00456 28346937
    18 5tdt:A (1.818) BS03 MBN 1.14.13.236 GO:0004497 ... Q00456 28346937
    19 5tdt:D (1.818) BS01 MBN 1.14.13.236 GO:0004497 ... Q00456 28346937
    20 5tdt:D (1.818) BS02 MBN 1.14.13.236 GO:0004497 ... Q00456 28346937
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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