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BioLiP
Download all results in tab-seperated text for 21 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1afa:1 (2.0) BS01 MBG ? N/A P19999 8636086
    2 1afa:2 (2.0) BS01 MBG ? N/A P19999 8636086
    3 1afa:3 (2.0) BS01 MBG ? N/A P19999 8636086
    4 1qf3:A (2.8) BS01 MBG ? GO:0030246 ... P02872 10417405
    5 1qf3:B (2.8) BS01 MBG ? GO:0030246 ... P02872 10417405
    6 1qf3:C (2.8) BS01 MBG ? GO:0030246 ... P02872 10417405
    7 1qf3:D (2.8) BS01 MBG ? GO:0030246 ... P02872 10417405
    8 2vmd:A (1.9) BS02 MBG ? GO:0005737 ... P42530 18384150 MOAD: Kd=0.95mM
    PDBbind: -logKd/Ki=3.02, Kd=0.95mM
    9 2vmg:A (1.9) BS02 MBG ? N/A A0A0H2YQB3 18292090 MOAD: Ka=480M^-1
    10 2wyf:A (2.4) BS01 MBG ? GO:0005737 ... Q05097 20410292 PDBbind: -logKd/Ki=4.43, Kd=37uM
    BindingDB: Kd=70000nM
    11 2wyf:C (2.4) BS01 MBG ? GO:0005737 ... Q05097 20410292 BindingDB: Kd=70000nM
    12 3f6j:A (1.75) BS01 MBG ? GO:0009289 ... Q99003 24833052
    13 4k0o:A (2.15) BS01 MBG ? GO:0009289 ... Q47200 24833052 PDBbind: -logKd/Ki=3.00, Kd=1mM
    14 4m1u:F (1.56) BS01 MBG ? GO:0005576 ... Q7DJJ2 24225957
    15 4m1u:F (1.56) BS02 MBG ? GO:0005576 ... Q7DJJ2 24225957
    16 4r6n:A (1.67) BS04 MBG ? GO:0005575 ... P18670 25664742 MOAD: Ka=150M^-1
    17 4r6n:E (1.67) BS04 MBG ? GO:0005575 ... P18670 25664742 MOAD: Ka=150M^-1
    18 4r6n:G (1.67) BS04 MBG ? GO:0005575 ... P18670 25664742 MOAD: Ka=150M^-1
    19 5j4t:A (1.94) BS04 MBG ? GO:0005575 ... P18670 28111895
    20 5j4t:G (1.94) BS04 MBG ? GO:0005575 ... P18670 28111895
    21 5j4x:A (1.65) BS04 MBG ? GO:0005575 ... P18670 28111895
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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