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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3mb3:A (2.25) BS01 MB3 ? N/A Q8WWQ0 22464331
    2 3mb4:A (1.66) BS01 MB3 ? GO:0006338 ... Q86U86 22464331
    3 3p1d:A (1.86) BS01 MB3 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q92793 22464331 PDBbind: -logKd/Ki=2.64, IC50=2.3mM
    BindingDB: IC50=2300000nM
    4 3rcw:C (2.21) BS01 MB3 ? N/A O95696 22464331
    5 3uvd:A (1.85) BS01 MB3 3.6.4.- GO:0006338 ... P51532 22464331
    6 4a9f:A (1.73) BS01 MB3 ? N/A P25440 22136404
    7 4a9f:B (1.73) BS01 MB3 ? N/A P25440 22136404
    8 4qss:A (2.0) BS01 MB3 3.6.1.- N/A Q6PL18 N/A
    9 5xdt:A (1.3) BS04 MB3 ? GO:0003924 ... Q6GHP9 28621933
    10 6rvp:A (1.16) BS03 MB3 ? GO:0003924 ... P0A031 31997533
    11 6yd5:A (1.55) BS02 MB3 ? GO:0003924 ... Q2FZ89 33908781
    12 6yd6:A (1.7) BS03 MB3 ? GO:0003924 ... Q2FZ89 33908781
    13 7p01:A (2.12) BS07 MB3 N/A GO:0005975 ... N/A 34682239
    14 7p07:A (2.13) BS02 MB3 N/A GO:0005975 ... N/A 34682239
    15 7p07:B (2.13) BS02 MB3 N/A GO:0005975 ... N/A 34682239
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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