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BioLiP
Download all results in tab-seperated text for 4535 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1601 4r07:A (2.0) BS01 MAN ? GO:0002224 ... Q9NR97 25599397
    1602 4r2g:C (3.283) BS01 MAN ? GO:0002250 ... P0DOY3 25259921
    1603 4r2g:I (3.283) BS01 MAN ? GO:0002250 ... P0DOY3 25259921
    1604 4r2g:I (3.283) BS02 MAN ? GO:0002250 ... P0DOY3 25259921
    1605 4r2g:M (3.283) BS01 MAN ? GO:0002250 ... P0DOY3 25259921
    1606 4r2g:M (3.283) BS02 MAN ? GO:0002250 ... P0DOY3 25259921
    1607 4r2g:P (3.283) BS01 MAN ? GO:0002250 ... P0DOY3 25259921
    1608 4r6a:A (2.1) BS01 MAN ? GO:0002224 ... Q9NR97 N/A
    1609 4r9g:A (2.2) BS01 MAN ? N/A L0E2M2 25342756
    1610 4r9g:B (2.2) BS01 MAN ? N/A L0E2M2 25342756
    1611 4rbp:H (1.85) BS01 MAN N/A N/A N/A 25380763
    1612 4rbp:H (1.85) BS02 MAN N/A N/A N/A 25380763
    1613 4rbp:M (1.85) BS01 MAN N/A N/A N/A 25380763
    1614 4rbp:M (1.85) BS02 MAN N/A N/A N/A 25380763
    1615 4tkc:A (1.29) BS02 MAN ? GO:0030246 ... I7H471 N/A
    1616 4tvp:G (3.1) BS01 MAN ? GO:0019031 ... Q2N0S5 25296255
    1617 4tvp:H (3.1) BS01 MAN N/A N/A N/A 25296255
    1618 4tvp:L (3.1) BS01 MAN N/A N/A N/A 25296255
    1619 4um8:C (2.852) BS01 MAN ? GO:0007155 ... P06756 25383667
    1620 4um9:C (2.5) BS06 MAN ? GO:0007155 ... P06756 25383667
    1621 4uoj:A (2.5) BS01 MAN 3.2.1.25 GO:0004553 ... A0A075B5H6 24975648
    1622 4uoj:A (2.5) BS02 MAN 3.2.1.25 GO:0004553 ... A0A075B5H6 24975648
    1623 4uoj:A (2.5) BS04 MAN 3.2.1.25 GO:0004553 ... A0A075B5H6 24975648
    1624 4uoj:A (2.5) BS05 MAN 3.2.1.25 GO:0004553 ... A0A075B5H6 24975648
    1625 4uoj:A (2.5) BS06 MAN 3.2.1.25 GO:0004553 ... A0A075B5H6 24975648
    1626 4uoj:B (2.5) BS01 MAN 3.2.1.25 GO:0004553 ... A0A075B5H6 24975648
    1627 4uoj:B (2.5) BS02 MAN 3.2.1.25 GO:0004553 ... A0A075B5H6 24975648
    1628 4uoj:B (2.5) BS03 MAN 3.2.1.25 GO:0004553 ... A0A075B5H6 24975648
    1629 4uoj:B (2.5) BS05 MAN 3.2.1.25 GO:0004553 ... A0A075B5H6 24975648
    1630 4ut4:A (1.94) BS01 MAN 2.7.1.167 GO:0005524 ... H7C745 26687481
    1631 4ut4:B (1.94) BS01 MAN 2.7.1.167 GO:0005524 ... H7C745 26687481
    1632 4utf:A (1.3) BS01 MAN 3.2.1.130 GO:0004559 ... D6D1V7 25567280
    1633 4utf:A (1.3) BS02 MAN 3.2.1.130 GO:0004559 ... D6D1V7 25567280
    1634 4utf:A (1.3) BS03 MAN 3.2.1.130 GO:0004559 ... D6D1V7 25567280
    1635 4v27:A (1.9) BS01 MAN 3.2.1.130 GO:0004559 ... D6D1V7 25487964 PDBbind: -logKd/Ki=6.66, Kd=217nM
    1636 4v28:A (1.2) BS01 MAN 3.2.1.130 GO:0004559 ... D6D1V7 25487964
    1637 4v28:A (1.2) BS02 MAN 3.2.1.130 GO:0004559 ... D6D1V7 25487964
    1638 4wi2:B (1.9) BS02 MAN ? N/A P01857 N/A
    1639 4wk2:A (2.5) BS02 MAN ? GO:0007155 ... P08648 25475857
    1640 4wk4:A (2.5) BS02 MAN ? GO:0007155 ... P08648 25475857
    1641 4wqq:A (1.7) BS04 MAN ? GO:0038023 ... Q7M462 25869490 MOAD: Ka=3170M^-1
    1642 4wqq:B (1.7) BS04 MAN ? GO:0038023 ... Q7M462 25869490 MOAD: Ka=3170M^-1
    1643 4wqq:C (1.7) BS04 MAN ? GO:0038023 ... Q7M462 25869490 MOAD: Ka=3170M^-1
    1644 4wqq:D (1.7) BS04 MAN ? GO:0038023 ... Q7M462 25869490 MOAD: Ka=3170M^-1
    1645 4wrf:A (1.901) BS04 MAN ? N/A P08427 28719181
    1646 4wux:A (1.9) BS01 MAN ? N/A P08427 28719181
    1647 4wux:A (1.9) BS02 MAN ? N/A P08427 28719181
    1648 4wux:A (1.9) BS03 MAN ? N/A P08427 28719181
    1649 4x4k:A (2.3) BS02 MAN ? GO:0005507 ... H8ZRU2 26625287
    1650 4x4k:A (2.3) BS07 MAN ? GO:0005507 ... H8ZRU2 26625287
    1651 4x8x:A (2.5) BS02 MAN ? N/A Q0E9H9 27386517
    1652 4x8x:B (2.5) BS01 MAN ? N/A Q0E9H9 27386517
    1653 4x9f:A (2.35) BS01 MAN ? N/A Q0E9H9 27386517
    1654 4x9f:A (2.35) BS02 MAN ? N/A Q0E9H9 27386517
    1655 4xqm:A (1.625) BS01 MAN 3.2.1.84 N/A Q9USH8 26062005
    1656 4xre:A (2.597) BS01 MAN ? GO:0003779 ... A4ZDL6 25139159
    1657 4xre:B (2.597) BS01 MAN ? GO:0003779 ... A4ZDL6 25139159
    1658 4xx6:A (1.95) BS01 MAN 3.2.1.8 GO:0000272 ... S7Q6I2 N/A
    1659 4xx6:A (1.95) BS02 MAN 3.2.1.8 GO:0000272 ... S7Q6I2 N/A
    1660 4xx6:B (1.95) BS01 MAN 3.2.1.8 GO:0000272 ... S7Q6I2 N/A
    1661 4xx6:B (1.95) BS02 MAN 3.2.1.8 GO:0000272 ... S7Q6I2 N/A
    1662 4xx6:B (1.95) BS03 MAN 3.2.1.8 GO:0000272 ... S7Q6I2 N/A
    1663 4ymd:A (2.87) BS01 MAN ? N/A Q9BWP8 25912189
    1664 4ymd:A (2.87) BS02 MAN ? N/A Q9BWP8 25912189
    1665 4ymd:B (2.87) BS01 MAN ? N/A Q9BWP8 25912189
    1666 4ymd:B (2.87) BS02 MAN ? N/A Q9BWP8 25912189
    1667 4ymd:D (2.87) BS01 MAN ? N/A Q9BWP8 25912189
    1668 4ymd:D (2.87) BS02 MAN ? N/A Q9BWP8 25912189
    1669 4ymd:F (2.87) BS01 MAN ? N/A Q9BWP8 25912189
    1670 4yn3:A (1.95) BS01 MAN 3.4.21.25 GO:0004252 ... Q39547 27616715
    1671 4z7w:F (2.89) BS02 MAN N/A N/A N/A 25948817
    1672 4z7w:H (2.89) BS02 MAN N/A N/A N/A 25948817
    1673 4z7w:H (2.89) BS03 MAN N/A N/A N/A 25948817
    1674 4zet:A (2.9) BS01 MAN ? N/A Q8WTT0 25995448
    1675 4zet:B (2.9) BS01 MAN ? N/A Q8WTT0 25995448
    1676 4zmj:G (3.31) BS01 MAN ? GO:0019031 ... Q2N0S6 26098315
    1677 4znq:A (1.9) BS01 MAN ? GO:0005537 ... Q5CZR5 26711430
    1678 4znq:B (1.9) BS01 MAN ? GO:0005537 ... Q5CZR5 26711430
    1679 4znr:A (2.1) BS01 MAN ? GO:0005537 ... Q5CZR5 26711430
    1680 4znr:B (2.1) BS01 MAN ? GO:0005537 ... Q5CZR5 26711430
    1681 4zpm:A (2.4) BS01 MAN ? GO:0005509 ... Q91Y09 26478182
    1682 4zpm:A (2.4) BS02 MAN ? GO:0005509 ... Q91Y09 26478182
    1683 4zpm:B (2.4) BS01 MAN ? GO:0005509 ... Q91Y09 26478182
    1684 4zpm:B (2.4) BS02 MAN ? GO:0005509 ... Q91Y09 26478182
    1685 4zpn:A (3.3) BS09 MAN ? GO:0005509 ... Q91XW9 26478182
    1686 4zpn:A (3.3) BS10 MAN ? GO:0005509 ... Q91XW9 26478182
    1687 4zpo:A (2.9) BS07 MAN ? GO:0005509 ... Q91XW9 26478182
    1688 4zpp:A (3.002) BS07 MAN ? GO:0005509 ... Q91XW9 26478182
    1689 4zpq:A (3.099) BS07 MAN ? GO:0005509 ... Q91XW9 26478182
    1690 4zpq:B (3.099) BS01 MAN ? GO:0005509 ... Q91XW9 26478182
    1691 4zpq:C (3.099) BS07 MAN ? GO:0005509 ... Q91XW9 26478182
    1692 4zps:A (2.9) BS01 MAN ? GO:0005509 ... Q91XY0 26478182
    1693 4zps:A (2.9) BS02 MAN ? GO:0005509 ... Q91XY0 26478182
    1694 5a6y:A (1.4) BS03 MAN ? GO:0030246 ... A0A0H2ZE85 30155149
    1695 5a6y:B (1.4) BS01 MAN ? GO:0030246 ... A0A0H2ZE85 30155149
    1696 5a6y:C (1.4) BS01 MAN ? GO:0030246 ... A0A0H2ZE85 30155149
    1697 5a6y:D (1.4) BS01 MAN ? GO:0030246 ... A0A0H2ZE85 30155149
    1698 5a7m:A (1.8) BS01 MAN 3.2.1.37 GO:0004553 ... Q92458 N/A
    1699 5a7m:A (1.8) BS02 MAN 3.2.1.37 GO:0004553 ... Q92458 N/A
    1700 5a7m:B (1.8) BS01 MAN 3.2.1.37 GO:0004553 ... Q92458 N/A
    1701 5a7v:A (1.35) BS02 MAN ? GO:0016740 ... Q8A186 26286752
    1702 5a7v:A (1.35) BS03 MAN ? GO:0016740 ... Q8A186 26286752
    1703 5a7v:B (1.35) BS02 MAN ? GO:0016740 ... Q8A186 26286752
    1704 5a7v:B (1.35) BS03 MAN ? GO:0016740 ... Q8A186 26286752
    1705 5aco:G (4.36) BS01 MAN N/A N/A N/A 26388028
    1706 5aco:H (4.36) BS01 MAN N/A N/A N/A 26388028
    1707 5aco:I (4.36) BS01 MAN N/A N/A N/A 26388028
    1708 5aco:J (4.36) BS01 MAN N/A N/A N/A 26388028
    1709 5aco:K (4.36) BS01 MAN N/A N/A N/A 26388028
    1710 5aco:L (4.36) BS01 MAN N/A N/A N/A 26388028
    1711 5ae6:A (2.1) BS01 MAN 3.2.1.37 GO:0004553 ... Q92458 N/A
    1712 5agd:A (1.2) BS02 MAN 3.2.1.101 GO:0005975 ... Q9Z4P9 25772148
    1713 5agd:A (1.2) BS03 MAN 3.2.1.101 GO:0005975 ... Q9Z4P9 25772148
    1714 5agd:A (1.2) BS04 MAN 3.2.1.101 GO:0005975 ... Q9Z4P9 25772148
    1715 5agd:A (1.2) BS05 MAN 3.2.1.101 GO:0005975 ... Q9Z4P9 25772148
    1716 5agd:B (1.2) BS02 MAN 3.2.1.101 GO:0005975 ... Q9Z4P9 25772148
    1717 5agd:B (1.2) BS03 MAN 3.2.1.101 GO:0005975 ... Q9Z4P9 25772148
    1718 5agd:B (1.2) BS04 MAN 3.2.1.101 GO:0005975 ... Q9Z4P9 25772148
    1719 5agd:B (1.2) BS05 MAN 3.2.1.101 GO:0005975 ... Q9Z4P9 25772148
    1720 5av7:A (1.85) BS01 MAN ? GO:0005536 ... P93114 26971576
    1721 5av7:B (1.85) BS01 MAN ? GO:0005536 ... P93114 26971576
    1722 5av7:C (1.85) BS01 MAN ? GO:0005536 ... P93114 26971576
    1723 5av7:D (1.85) BS01 MAN ? GO:0005536 ... P93114 26971576
    1724 5ava:A (3.0) BS01 MAN ? GO:0030246 ... P05088 26971576
    1725 5ava:B (3.0) BS01 MAN ? GO:0030246 ... P05088 26971576
    1726 5ava:C (3.0) BS01 MAN ? GO:0030246 ... P05088 26971576
    1727 5ava:D (3.0) BS01 MAN ? GO:0030246 ... P05088 26971576
    1728 5ava:E (3.0) BS01 MAN ? GO:0030246 ... P05088 26971576
    1729 5ava:F (3.0) BS01 MAN ? GO:0030246 ... P05088 26971576
    1730 5ava:G (3.0) BS01 MAN ? GO:0030246 ... P05088 26971576
    1731 5ava:H (3.0) BS01 MAN ? GO:0030246 ... P05088 26971576
    1732 5awd:A (2.05) BS01 MAN ? GO:0002224 ... Q9NR97 26351878
    1733 5awv:A (1.93) BS06 MAN ? GO:0000166 ... Q7WZ62 21478878
    1734 5awv:B (1.93) BS07 MAN ? GO:0000166 ... Q7WZ62 21478878
    1735 5awv:C (1.93) BS04 MAN ? GO:0000166 ... Q7WZ62 21478878
    1736 5az5:A (2.4) BS01 MAN ? GO:0002224 ... Q9NR97 N/A
    1737 5az5:B (2.4) BS01 MAN ? GO:0002224 ... Q9NR97 N/A
    1738 5b0q:A (2.3) BS01 MAN 2.4.1.339 GO:0016757 ... Q92DF6 26632508
    1739 5b0q:B (2.3) BS01 MAN 2.4.1.339 GO:0016757 ... Q92DF6 26632508
    1740 5b0s:A (2.1) BS01 MAN 2.4.1.339 GO:0016757 ... Q92DF6 26632508
    1741 5b0s:B (2.1) BS01 MAN 2.4.1.339 GO:0016757 ... Q92DF6 26632508
    1742 5b1x:A (2.902) BS01 MAN ? N/A Q9UMR7 27015765
    1743 5b1x:B (2.902) BS01 MAN ? N/A Q9UMR7 27015765
    1744 5b1x:C (2.902) BS01 MAN ? N/A Q9UMR7 27015765
    1745 5b1x:D (2.902) BS01 MAN ? N/A Q9UMR7 27015765
    1746 5bxa:A (1.9) BS01 MAN ? GO:0004553 ... Q9I1N2 26424791
    1747 5bxa:A (1.9) BS02 MAN ? GO:0004553 ... Q9I1N2 26424791
    1748 5bxa:A (1.9) BS03 MAN ? GO:0004553 ... Q9I1N2 26424791
    1749 5c7k:A (4.6019) BS01 MAN ? N/A S6B291 26457433
    1750 5c7k:A (4.6019) BS02 MAN ? N/A S6B291 26457433
    1751 5c7k:B (4.6019) BS01 MAN N/A N/A N/A 26457433
    1752 5c7k:E (4.6019) BS02 MAN ? N/A P01857 26457433
    1753 5c7k:E (4.6019) BS03 MAN ? N/A P01857 26457433
    1754 5c7k:E (4.6019) BS04 MAN ? N/A P01857 26457433
    1755 5c7k:E (4.6019) BS05 MAN ? N/A P01857 26457433
    1756 5cez:G (3.031) BS01 MAN ? GO:0019031 ... Q2N0S6 26682982
    1757 5cez:L (3.031) BS01 MAN N/A N/A N/A 26682982
    1758 5cjx:A (3.584) BS01 MAN N/A N/A N/A 26359989
    1759 5cjx:A (3.584) BS02 MAN N/A N/A N/A 26359989
    1760 5cjx:A (3.584) BS03 MAN N/A N/A N/A 26359989
    1761 5cjx:D (3.584) BS01 MAN N/A N/A N/A 26359989
    1762 5cjx:D (3.584) BS02 MAN N/A N/A N/A 26359989
    1763 5cjx:D (3.584) BS03 MAN N/A N/A N/A 26359989
    1764 5cjx:H (3.584) BS01 MAN N/A N/A N/A 26359989
    1765 5cjx:H (3.584) BS02 MAN N/A N/A N/A 26359989
    1766 5cjx:H (3.584) BS03 MAN N/A N/A N/A 26359989
    1767 5d9q:D (4.4) BS01 MAN N/A N/A N/A 27560183
    1768 5d9q:F (4.4) BS01 MAN ? N/A S6B291 27560183
    1769 5d9q:H (4.4) BS01 MAN ? N/A S6B291 27560183
    1770 5d9q:I (4.4) BS01 MAN N/A N/A N/A 27560183
    1771 5d9q:N (4.4) BS01 MAN ? N/A S6B291 27560183
    1772 5d9q:O (4.4) BS01 MAN N/A N/A N/A 27560183
    1773 5dl0:A (2.3) BS01 MAN 3.2.1.20 GO:0003824 ... G0SG42 26847925
    1774 5dlv:A (2.0) BS01 MAN 3.1.4.39 GO:0001953 ... Q64610 27075612
    1775 5dlv:B (2.0) BS01 MAN 3.1.4.39 GO:0001953 ... Q64610 27075612
    1776 5dlw:A (1.8) BS01 MAN 3.1.4.39 GO:0001953 ... Q64610 27075612
    1777 5dlw:A (1.8) BS02 MAN 3.1.4.39 GO:0001953 ... Q64610 27075612
    1778 5dzv:B (3.6) BS14 MAN ? GO:0005509 ... Q91Y13 27161523
    1779 5dzv:B (3.6) BS15 MAN ? GO:0005509 ... Q91Y13 27161523
    1780 5dzv:B (3.6) BS16 MAN ? GO:0005509 ... Q91Y13 27161523
    1781 5dzw:A (2.43) BS01 MAN ? GO:0005509 ... O88689 27161523
    1782 5dzy:A (2.9) BS01 MAN ? GO:0005509 ... Q91XZ2 27161523
    1783 5dzy:B (2.9) BS01 MAN ? GO:0005509 ... Q91XZ2 27161523
    1784 5dzy:C (2.9) BS01 MAN ? GO:0005509 ... Q91XZ2 27161523
    1785 5dzy:D (2.9) BS02 MAN ? GO:0005509 ... Q91XZ2 27161523
    1786 5dzy:F (2.9) BS01 MAN ? GO:0005509 ... Q91XZ2 27161523
    1787 5eqx:A (3.05) BS09 MAN ? GO:0005509 ... P32926 27298358
    1788 5eqx:A (3.05) BS10 MAN ? GO:0005509 ... P32926 27298358
    1789 5eqx:A (3.05) BS11 MAN ? GO:0005509 ... P32926 27298358
    1790 5erd:A (2.9) BS01 MAN ? GO:0005509 ... Q14126 27298358
    1791 5erd:A (2.9) BS02 MAN ? GO:0005509 ... Q14126 27298358
    1792 5erd:B (2.9) BS01 MAN ? GO:0005509 ... Q14126 27298358
    1793 5erd:B (2.9) BS02 MAN ? GO:0005509 ... Q14126 27298358
    1794 5erp:A (2.7) BS01 MAN ? GO:0005509 ... Q02487 27298358
    1795 5erp:B (2.7) BS01 MAN ? GO:0005509 ... Q02487 27298358
    1796 5es4:A (3.3) BS01 MAN ? GO:0005178 ... P20702 26936951
    1797 5esv:A (3.105) BS02 MAN ? N/A S6BGE0 26689967
    1798 5esv:B (3.105) BS01 MAN ? GO:0002250 ... P01834 26689967
    1799 5esv:D (3.105) BS01 MAN ? GO:0002250 ... P01834 26689967
    1800 5esv:H (3.105) BS01 MAN ? N/A S6BGE0 26689967

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417