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BioLiP
Download all results in tab-seperated text for 4535 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1401 4iib:A (1.8) BS03 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1402 4iib:A (1.8) BS04 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1403 4iib:A (1.8) BS05 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1404 4iib:A (1.8) BS06 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1405 4iib:A (1.8) BS07 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1406 4iib:B (1.8) BS02 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1407 4iib:B (1.8) BS03 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1408 4iib:B (1.8) BS04 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1409 4iib:B (1.8) BS05 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1410 4iib:B (1.8) BS06 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1411 4iib:B (1.8) BS07 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1412 4iic:A (1.9) BS02 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1413 4iic:A (1.9) BS03 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1414 4iic:A (1.9) BS04 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1415 4iic:A (1.9) BS05 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1416 4iic:A (1.9) BS06 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1417 4iic:A (1.9) BS07 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1418 4iic:B (1.9) BS02 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1419 4iic:B (1.9) BS03 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1420 4iic:B (1.9) BS04 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1421 4iic:B (1.9) BS05 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1422 4iic:B (1.9) BS06 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1423 4iid:A (2.3) BS02 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1424 4iid:A (2.3) BS03 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1425 4iid:A (2.3) BS04 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1426 4iid:A (2.3) BS05 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1427 4iid:B (2.3) BS02 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1428 4iid:B (2.3) BS03 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1429 4iid:B (2.3) BS04 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1430 4iid:B (2.3) BS05 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1431 4iid:B (2.3) BS06 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1432 4iie:A (2.0) BS02 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1433 4iie:A (2.0) BS03 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1434 4iie:A (2.0) BS04 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1435 4iie:A (2.0) BS05 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1436 4iie:A (2.0) BS06 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1437 4iie:B (2.0) BS02 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1438 4iie:B (2.0) BS03 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1439 4iie:B (2.0) BS04 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1440 4iie:B (2.0) BS05 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1441 4iie:B (2.0) BS06 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1442 4iif:A (2.45) BS02 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1443 4iif:A (2.45) BS03 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1444 4iif:A (2.45) BS04 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1445 4iif:B (2.45) BS02 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1446 4iif:B (2.45) BS03 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1447 4iif:B (2.45) BS04 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1448 4iif:B (2.45) BS05 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1449 4iif:B (2.45) BS06 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1450 4iig:A (2.3) BS02 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1451 4iig:A (2.3) BS03 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1452 4iig:A (2.3) BS04 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1453 4iig:A (2.3) BS05 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1454 4iig:A (2.3) BS06 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1455 4iig:A (2.3) BS07 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1456 4iig:B (2.3) BS02 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1457 4iig:B (2.3) BS03 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1458 4iig:B (2.3) BS04 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1459 4iig:B (2.3) BS05 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1460 4iig:B (2.3) BS06 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1461 4iig:B (2.3) BS07 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1462 4iih:A (2.0) BS02 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1463 4iih:A (2.0) BS03 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1464 4iih:A (2.0) BS04 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1465 4iih:A (2.0) BS05 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1466 4iih:A (2.0) BS06 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1467 4iih:A (2.0) BS07 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1468 4iih:B (2.0) BS01 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1469 4iih:B (2.0) BS03 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1470 4iih:B (2.0) BS04 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1471 4iih:B (2.0) BS05 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1472 4iih:B (2.0) BS06 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1473 4iih:B (2.0) BS07 MAN 3.2.1.21 GO:0004553 ... P48825 23537284
    1474 4iug:A (2.6) BS01 MAN 3.2.1.23 GO:0004553 ... Q2UCU3 23688418
    1475 4iug:A (2.6) BS02 MAN 3.2.1.23 GO:0004553 ... Q2UCU3 23688418
    1476 4iug:A (2.6) BS03 MAN 3.2.1.23 GO:0004553 ... Q2UCU3 23688418
    1477 4iug:A (2.6) BS04 MAN 3.2.1.23 GO:0004553 ... Q2UCU3 23688418
    1478 4iug:A (2.6) BS05 MAN 3.2.1.23 GO:0004553 ... Q2UCU3 23688418
    1479 4j0m:A (2.5) BS01 MAN 2.7.11.1 N/A Q9ZWC8 23709366
    1480 4j0m:A (2.5) BS02 MAN 2.7.11.1 N/A Q9ZWC8 23709366
    1481 4j0m:B (2.5) BS01 MAN 2.7.11.1 N/A Q9ZWC8 23709366
    1482 4j3r:A (2.2) BS04 MAN 1.10.3.1 GO:0004097 ... Q2UNF9 24043469
    1483 4jm2:A (3.1) BS01 MAN N/A N/A N/A 23708606
    1484 4jm2:A (3.1) BS02 MAN N/A N/A N/A 23708606
    1485 4jm2:B (3.1) BS01 MAN N/A N/A N/A 23708606
    1486 4jm2:B (3.1) BS03 MAN N/A N/A N/A 23708606
    1487 4k1h:B (1.797) BS02 MAN 3.2.1.18 GO:0004308 ... Q194T1 23531861
    1488 4k1i:B (1.8) BS02 MAN 3.2.1.18 GO:0004308 ... Q194T1 23531861
    1489 4k1j:A (2.2) BS02 MAN 3.2.1.18 GO:0004308 ... Q194T1 23531861
    1490 4k1k:B (1.6) BS02 MAN 3.2.1.18 GO:0004308 ... Q194T1 23531861
    1491 4k1y:A (2.5) BS02 MAN ? GO:0005537 ... A0A023GPI8 24865454
    1492 4k1y:B (2.5) BS02 MAN ? GO:0005537 ... A0A023GPI8 24865454
    1493 4k1y:C (2.5) BS02 MAN ? GO:0005537 ... A0A023GPI8 24865454
    1494 4k1y:D (2.5) BS01 MAN ? GO:0005537 ... A0A023GPI8 24865454
    1495 4k1z:A (2.3) BS01 MAN ? GO:0005537 ... A0A023GPI8 24865454
    1496 4k1z:B (2.3) BS01 MAN ? GO:0005537 ... A0A023GPI8 24865454
    1497 4k1z:C (2.3) BS01 MAN ? GO:0005537 ... A0A023GPI8 24865454
    1498 4k1z:D (2.3) BS02 MAN ? GO:0005537 ... A0A023GPI8 24865454
    1499 4k3g:B (1.93) BS01 MAN N/A N/A N/A 23978698
    1500 4k3h:D (2.45) BS02 MAN N/A N/A N/A 23978698
    1501 4k3h:E (2.45) BS02 MAN N/A N/A N/A 23978698
    1502 4k3h:H (2.45) BS02 MAN N/A N/A N/A 23978698
    1503 4kgj:B (2.99) BS01 MAN 3.2.1.76 GO:0004553 ... P35475 24036510
    1504 4kgl:B (2.701) BS01 MAN 3.2.1.76 GO:0004553 ... P35475 24036510
    1505 4kgl:B (2.701) BS02 MAN 3.2.1.76 GO:0004553 ... P35475 24036510
    1506 4kgq:D (2.27) BS01 MAN ? N/A O95407 25087510
    1507 4kh2:B (2.36) BS01 MAN 3.2.1.76 GO:0004553 ... P35475 24036510
    1508 4lhk:A (1.73) BS01 MAN ? N/A B3IUB3 25873380
    1509 4lhk:A (1.73) BS02 MAN ? N/A B3IUB3 25873380
    1510 4lhk:B (1.73) BS01 MAN ? N/A B3IUB3 25873380
    1511 4lhk:B (1.73) BS02 MAN ? N/A B3IUB3 25873380
    1512 4lhn:A (2.12) BS01 MAN ? N/A P32768 25873380
    1513 4lyq:A (2.0) BS01 MAN N/A GO:0004553 ... N/A 25372687
    1514 4m18:A (3.203) BS01 MAN ? N/A P35247 24224757
    1515 4m18:B (3.203) BS01 MAN ? N/A P35247 24224757
    1516 4m18:C (3.203) BS01 MAN ? N/A P35247 24224757
    1517 4m18:C (3.203) BS02 MAN ? N/A P35247 24224757
    1518 4m18:D (3.203) BS01 MAN ? N/A P35247 24224757
    1519 4m18:E (3.203) BS01 MAN ? N/A P35247 24224757
    1520 4m18:E (3.203) BS02 MAN ? N/A P35247 24224757
    1521 4m18:F (3.203) BS01 MAN ? N/A P35247 24224757
    1522 4m18:F (3.203) BS02 MAN ? N/A P35247 24224757
    1523 4m18:G (3.203) BS01 MAN ? N/A P35247 24224757
    1524 4m18:H (3.203) BS01 MAN ? N/A P35247 24224757
    1525 4m18:I (3.203) BS01 MAN ? N/A P35247 24224757
    1526 4m18:J (3.203) BS01 MAN ? N/A P35247 24224757
    1527 4m18:K (3.203) BS01 MAN ? N/A P35247 24224757
    1528 4m18:L (3.203) BS01 MAN ? N/A P35247 24224757
    1529 4m18:L (3.203) BS02 MAN ? N/A P35247 24224757
    1530 4ma1:B (2.32) BS01 MAN N/A N/A N/A 24682362
    1531 4mmx:A (3.32) BS01 MAN ? GO:0001525 ... P06756 24658351
    1532 4mza:A (1.653) BS01 MAN 3.2.1.18 GO:0004308 ... P08492 24149514
    1533 4nen:A (2.9012) BS01 MAN ? GO:0005178 ... P20702 24385486
    1534 4ni3:A (1.3993) BS01 MAN 3.2.1.51 GO:0004560 ... J9UN47 25086049
    1535 4ni3:B (1.3993) BS01 MAN 3.2.1.51 GO:0004560 ... J9UN47 25086049
    1536 4nrs:A (2.57) BS01 MAN 3.2.1.78 GO:0004553 ... A0A075C6T6 25372687
    1537 4nzd:A (2.75) BS02 MAN ? GO:0004896 ... Q9HBE5 N/A
    1538 4nzd:B (2.75) BS01 MAN ? GO:0004896 ... Q9HBE5 N/A
    1539 4nzd:C (2.75) BS01 MAN ? GO:0004896 ... Q9HBE5 N/A
    1540 4obr:A (2.46) BS01 MAN 3.2.1.76 GO:0004553 ... P35475 N/A
    1541 4obr:B (2.46) BS01 MAN 3.2.1.76 GO:0004553 ... P35475 N/A
    1542 4oit:A (2.24) BS01 MAN ? N/A A0QYH7 24957055 MOAD: Ka=32.5M^-1
    1543 4oit:A (2.24) BS02 MAN ? N/A A0QYH7 24957055 MOAD: Ka=32.5M^-1
    1544 4oit:A (2.24) BS03 MAN ? N/A A0QYH7 24957055 MOAD: Ka=32.5M^-1
    1545 4oit:B (2.24) BS01 MAN ? N/A A0QYH7 24957055 MOAD: Ka=32.5M^-1
    1546 4oit:C (2.24) BS01 MAN ? N/A A0QYH7 24957055 MOAD: Ka=32.5M^-1
    1547 4oit:C (2.24) BS02 MAN ? N/A A0QYH7 24957055 MOAD: Ka=32.5M^-1
    1548 4oit:C (2.24) BS03 MAN ? N/A A0QYH7 24957055 MOAD: Ka=32.5M^-1
    1549 4oit:C (2.24) BS04 MAN ? N/A A0QYH7 24957055 MOAD: Ka=32.5M^-1
    1550 4oit:D (2.24) BS01 MAN ? N/A A0QYH7 24957055 MOAD: Ka=32.5M^-1
    1551 4oit:D (2.24) BS02 MAN ? N/A A0QYH7 24957055 MOAD: Ka=32.5M^-1
    1552 4oit:D (2.24) BS03 MAN ? N/A A0QYH7 24957055 MOAD: Ka=32.5M^-1
    1553 4okr:A (2.601) BS01 MAN ? N/A O00816 24639528
    1554 4okr:B (2.601) BS01 MAN ? N/A O00816 24639528
    1555 4oku:A (3.2) BS01 MAN ? N/A O00816 24639528
    1556 4oku:B (3.2) BS01 MAN ? N/A O00816 24639528
    1557 4p6a:A (1.398) BS01 MAN ? N/A Q9KWN0 25403811
    1558 4p6a:A (1.398) BS02 MAN ? N/A Q9KWN0 25403811
    1559 4p6a:A (1.398) BS03 MAN ? N/A Q9KWN0 25403811
    1560 4p9h:H (3.0) BS02 MAN N/A N/A N/A 24767986
    1561 4p9h:H (3.0) BS03 MAN N/A N/A N/A 24767986
    1562 4p9h:H (3.0) BS04 MAN N/A N/A N/A 24767986
    1563 4pfw:A (2.198) BS01 MAN N/A GO:0043190 ... N/A 25210043
    1564 4pfw:B (2.198) BS01 MAN N/A GO:0043190 ... N/A 25210043
    1565 4pik:A (1.7) BS01 MAN ? GO:0030246 ... O22321 26496612
    1566 4pik:A (1.7) BS02 MAN ? GO:0030246 ... O22321 26496612
    1567 4pik:B (1.7) BS01 MAN ? GO:0030246 ... O22321 26496612
    1568 4pik:B (1.7) BS02 MAN ? GO:0030246 ... O22321 26496612
    1569 4pik:B (1.7) BS03 MAN ? GO:0030246 ... O22321 26496612
    1570 4pik:C (1.7) BS01 MAN ? GO:0030246 ... O22321 26496612
    1571 4pik:C (1.7) BS02 MAN ? GO:0030246 ... O22321 26496612
    1572 4pik:C (1.7) BS03 MAN ? GO:0030246 ... O22321 26496612
    1573 4pik:D (1.7) BS01 MAN ? GO:0030246 ... O22321 26496612
    1574 4pik:D (1.7) BS02 MAN ? GO:0030246 ... O22321 26496612
    1575 4pit:A (1.55) BS01 MAN ? GO:0030246 ... O22321 26496612
    1576 4pit:A (1.55) BS02 MAN ? GO:0030246 ... O22321 26496612
    1577 4pit:B (1.55) BS01 MAN ? GO:0030246 ... O22321 26496612
    1578 4pit:B (1.55) BS02 MAN ? GO:0030246 ... O22321 26496612
    1579 4pit:B (1.55) BS03 MAN ? GO:0030246 ... O22321 26496612
    1580 4pit:C (1.55) BS01 MAN ? GO:0030246 ... O22321 26496612
    1581 4pit:C (1.55) BS02 MAN ? GO:0030246 ... O22321 26496612
    1582 4pit:D (1.55) BS01 MAN ? GO:0030246 ... O22321 26496612
    1583 4pit:D (1.55) BS02 MAN ? GO:0030246 ... O22321 26496612
    1584 4q7d:A (2.35) BS02 MAN ? N/A P01857 25036289
    1585 4qbz:A (2.0) BS01 MAN ? GO:0002224 ... Q9NR97 25192394
    1586 4qi3:A (1.4) BS02 MAN ? N/A A9XK88 26151670
    1587 4qi3:A (1.4) BS03 MAN ? N/A A9XK88 26151670
    1588 4qi3:A (1.4) BS04 MAN ? N/A A9XK88 26151670
    1589 4qi3:B (1.4) BS03 MAN ? N/A A9XK88 26151670
    1590 4qi3:B (1.4) BS04 MAN ? N/A A9XK88 26151670
    1591 4qi6:A (3.2) BS03 MAN ? GO:0000166 ... A9XK88 26151670
    1592 4qi6:A (3.2) BS04 MAN ? GO:0000166 ... A9XK88 26151670
    1593 4qi6:A (3.2) BS05 MAN ? GO:0000166 ... A9XK88 26151670
    1594 4qi6:A (3.2) BS06 MAN ? GO:0000166 ... A9XK88 26151670
    1595 4qi7:B (2.9) BS03 MAN ? GO:0000166 ... Q7RXM0 26151670
    1596 4qqq:A (2.5) BS01 MAN ? GO:0005576 ... Q2XU26 N/A
    1597 4qqq:A (2.5) BS02 MAN ? GO:0005576 ... Q2XU26 N/A
    1598 4qww:A (2.7) BS01 MAN 3.1.1.7 GO:0001507 ... Q92035 25411244
    1599 4qww:B (2.7) BS01 MAN 3.1.1.7 GO:0001507 ... Q92035 25411244
    1600 4qww:F (2.7) BS01 MAN N/A N/A N/A 25411244

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417