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BioLiP
Download all results in tab-seperated text for 4535 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1001 3ikr:C (1.65) BS04 MAN ? N/A P35247 19799916
    1002 3ll2:A (0.97) BS01 MAN ? N/A P84801 20826337
    1003 3ll2:A (0.97) BS02 MAN ? N/A P84801 20826337
    1004 3m5q:A (0.93) BS01 MAN 1.11.1.13 GO:0000302 ... Q02567 20356630
    1005 3m8m:A (1.05) BS01 MAN 1.11.1.13 GO:0000302 ... Q02567 20356630
    1006 3man:A (1.6) BS01 MAN 3.2.1.78 GO:0000272 ... Q9ZF13 9817845
    1007 3mit:A (2.32) BS01 MAN ? GO:0030246 ... Q8L5H4 20729346
    1008 3mit:A (2.32) BS02 MAN ? GO:0030246 ... Q8L5H4 20729346
    1009 3mit:A (2.32) BS03 MAN ? GO:0030246 ... Q8L5H4 20729346
    1010 3mit:B (2.32) BS01 MAN ? GO:0030246 ... Q8L5H4 20729346
    1011 3mit:B (2.32) BS02 MAN ? GO:0030246 ... Q8L5H4 20729346
    1012 3mit:B (2.32) BS03 MAN ? GO:0030246 ... Q8L5H4 20729346
    1013 3miu:A (2.63) BS01 MAN ? GO:0030246 ... Q8L5H4 20729346
    1014 3miu:A (2.63) BS02 MAN ? GO:0030246 ... Q8L5H4 20729346
    1015 3miu:A (2.63) BS03 MAN ? GO:0030246 ... Q8L5H4 20729346
    1016 3miu:B (2.63) BS01 MAN ? GO:0030246 ... Q8L5H4 20729346
    1017 3miu:B (2.63) BS02 MAN ? GO:0030246 ... Q8L5H4 20729346
    1018 3miu:B (2.63) BS03 MAN ? GO:0030246 ... Q8L5H4 20729346
    1019 3nkm:A (2.002) BS01 MAN 3.1.4.39 GO:0003676 ... Q9R1E6 21240269
    1020 3nkn:A (1.8) BS01 MAN 3.1.4.39 GO:0003676 ... Q9R1E6 21240269
    1021 3nko:A (1.75) BS01 MAN 3.1.4.39 GO:0003676 ... Q9R1E6 21240269
    1022 3nkp:A (1.751) BS01 MAN 3.1.4.39 GO:0003676 ... Q9R1E6 21240269
    1023 3nkq:A (1.7) BS01 MAN 3.1.4.39 GO:0003676 ... Q9R1E6 21240269
    1024 3nkr:A (1.704) BS01 MAN 3.1.4.39 GO:0003676 ... Q9R1E6 21240269
    1025 3o0w:A (1.95) BS01 MAN ? GO:0005509 ... P14211 20880849
    1026 3o0w:A (1.95) BS02 MAN ? GO:0005509 ... P14211 20880849
    1027 3o0x:A (2.01) BS01 MAN ? GO:0005509 ... P14211 20880849
    1028 3o0x:A (2.01) BS02 MAN ? GO:0005509 ... P14211 20880849
    1029 3o0x:B (2.01) BS01 MAN ? GO:0005509 ... P14211 20880849
    1030 3o0x:B (2.01) BS02 MAN ? GO:0005509 ... P14211 20880849
    1031 3oau:H (1.9) BS01 MAN N/A N/A N/A 20702629
    1032 3oau:H (1.9) BS02 MAN N/A N/A N/A 20702629
    1033 3ob0:H (2.85) BS01 MAN N/A N/A N/A 20852065
    1034 3ob0:M (2.85) BS01 MAN N/A N/A N/A 20852065
    1035 3og2:A (1.2) BS01 MAN 3.2.1.23 GO:0004553 ... Q70SY0 21130883
    1036 3og2:A (1.2) BS02 MAN 3.2.1.23 GO:0004553 ... Q70SY0 21130883
    1037 3og2:A (1.2) BS03 MAN 3.2.1.23 GO:0004553 ... Q70SY0 21130883
    1038 3og2:A (1.2) BS05 MAN 3.2.1.23 GO:0004553 ... Q70SY0 21130883
    1039 3ogr:A (1.5) BS01 MAN 3.2.1.23 GO:0004553 ... Q70SY0 21130883
    1040 3ogr:A (1.5) BS02 MAN 3.2.1.23 GO:0004553 ... Q70SY0 21130883
    1041 3ogr:A (1.5) BS03 MAN 3.2.1.23 GO:0004553 ... Q70SY0 21130883
    1042 3ogr:A (1.5) BS05 MAN 3.2.1.23 GO:0004553 ... Q70SY0 21130883
    1043 3ogr:A (1.5) BS06 MAN 3.2.1.23 GO:0004553 ... Q70SY0 21130883
    1044 3ogs:A (1.75) BS01 MAN 3.2.1.23 GO:0004553 ... Q70SY0 21130883
    1045 3ogs:A (1.75) BS02 MAN 3.2.1.23 GO:0004553 ... Q70SY0 21130883
    1046 3ogs:A (1.75) BS03 MAN 3.2.1.23 GO:0004553 ... Q70SY0 21130883
    1047 3ogs:A (1.75) BS04 MAN 3.2.1.23 GO:0004553 ... Q70SY0 21130883
    1048 3ogv:A (1.4) BS01 MAN 3.2.1.23 GO:0004553 ... Q70SY0 21130883
    1049 3ogv:A (1.4) BS02 MAN 3.2.1.23 GO:0004553 ... Q70SY0 21130883
    1050 3ogv:A (1.4) BS03 MAN 3.2.1.23 GO:0004553 ... Q70SY0 21130883
    1051 3ogv:A (1.4) BS04 MAN 3.2.1.23 GO:0004553 ... Q70SY0 21130883
    1052 3oja:B (2.7) BS01 MAN N/A N/A N/A 20826443
    1053 3p5d:A (1.8013) BS01 MAN ? N/A Q9UJ71 21112338
    1054 3p5d:B (1.8013) BS01 MAN ? N/A Q9UJ71 21112338
    1055 3p5d:C (1.8013) BS01 MAN ? N/A Q9UJ71 21112338
    1056 3p5d:D (1.8013) BS01 MAN ? N/A Q9UJ71 21112338
    1057 3p5e:A (1.7012) BS01 MAN ? N/A Q9UJ71 21112338
    1058 3p5e:B (1.7012) BS01 MAN ? N/A Q9UJ71 21112338
    1059 3p5e:C (1.7012) BS01 MAN ? N/A Q9UJ71 21112338
    1060 3p5e:D (1.7012) BS01 MAN ? N/A Q9UJ71 21112338
    1061 3p5f:A (1.7501) BS01 MAN ? N/A Q9UJ71 21112338
    1062 3p5f:B (1.7501) BS01 MAN ? N/A Q9UJ71 21112338
    1063 3p5f:C (1.7501) BS01 MAN ? N/A Q9UJ71 21112338
    1064 3p5f:C (1.7501) BS02 MAN ? N/A Q9UJ71 21112338
    1065 3p5f:D (1.7501) BS01 MAN ? N/A Q9UJ71 21112338
    1066 3p7g:A (1.5) BS02 MAN ? N/A Q9UJ71 18061677
    1067 3p7g:B (1.5) BS02 MAN ? N/A Q9UJ71 18061677
    1068 3p7g:C (1.5) BS02 MAN ? N/A Q9UJ71 18061677
    1069 3p7g:D (1.5) BS02 MAN ? N/A Q9UJ71 18061677
    1070 3pak:A (1.9) BS03 MAN ? N/A P08427 21047777
    1071 3pgb:A (2.45) BS01 MAN 1.4.3.- GO:0005507 ... Q5B038 21604787
    1072 3q2v:A (3.4) BS13 MAN ? GO:0005509 ... P09803 21300292
    1073 3q2v:A (3.4) BS14 MAN ? GO:0005509 ... P09803 21300292
    1074 3q2v:A (3.4) BS15 MAN ? GO:0005509 ... P09803 21300292
    1075 3q2v:A (3.4) BS16 MAN ? GO:0005509 ... P09803 21300292
    1076 3q2v:A (3.4) BS17 MAN ? GO:0005509 ... P09803 21300292
    1077 3q2v:A (3.4) BS18 MAN ? GO:0005509 ... P09803 21300292
    1078 3q2v:B (3.4) BS13 MAN ? GO:0005509 ... P09803 21300292
    1079 3q2v:B (3.4) BS14 MAN ? GO:0005509 ... P09803 21300292
    1080 3q2v:B (3.4) BS15 MAN ? GO:0005509 ... P09803 21300292
    1081 3q2v:B (3.4) BS16 MAN ? GO:0005509 ... P09803 21300292
    1082 3q2v:B (3.4) BS17 MAN ? GO:0005509 ... P09803 21300292
    1083 3q2v:B (3.4) BS18 MAN ? GO:0005509 ... P09803 21300292
    1084 3q2w:A (3.2) BS13 MAN ? GO:0005509 ... P15116 21300292
    1085 3q2w:A (3.2) BS14 MAN ? GO:0005509 ... P15116 21300292
    1086 3q2w:A (3.2) BS15 MAN ? GO:0005509 ... P15116 21300292
    1087 3q2w:A (3.2) BS16 MAN ? GO:0005509 ... P15116 21300292
    1088 3q2w:A (3.2) BS17 MAN ? GO:0005509 ... P15116 21300292
    1089 3q2w:A (3.2) BS18 MAN ? GO:0005509 ... P15116 21300292
    1090 3qlq:A (1.7) BS03 MAN ? GO:0005515 ... P81461 N/A
    1091 3qlq:B (1.7) BS03 MAN ? GO:0005515 ... P81461 N/A
    1092 3qlq:C (1.7) BS03 MAN ? GO:0005515 ... P81461 N/A
    1093 3qlq:D (1.7) BS03 MAN ? GO:0005515 ... P81461 N/A
    1094 3qsp:A (2.1) BS01 MAN ? GO:0003824 ... A0A0H2URZ6 21388958
    1095 3qsp:B (2.1) BS01 MAN ? GO:0003824 ... A0A0H2URZ6 21388958
    1096 3qt9:A (2.05) BS02 MAN ? GO:0005975 ... Q8XNB2 21388958
    1097 3qw9:A (2.0) BS01 MAN ? N/A P26342 21402931
    1098 3rg1:A (2.91) BS01 MAN ? GO:0016020 ... A6QNK7 21857663
    1099 3rg1:C (2.91) BS01 MAN ? GO:0006955 ... A4IFT3 21857663
    1100 3rg1:D (2.91) BS02 MAN ? GO:0006955 ... A4IFT3 21857663
    1101 3rg1:D (2.91) BS03 MAN ? GO:0006955 ... A4IFT3 21857663
    1102 3rg1:D (2.91) BS04 MAN ? GO:0006955 ... A4IFT3 21857663
    1103 3rg1:E (2.91) BS01 MAN ? GO:0016020 ... A6QNK7 21857663
    1104 3rg1:H (2.91) BS02 MAN ? GO:0006955 ... A4IFT3 21857663
    1105 3rg1:H (2.91) BS03 MAN ? GO:0006955 ... A4IFT3 21857663
    1106 3rg1:I (2.91) BS01 MAN ? GO:0016020 ... A6QNK7 21857663
    1107 3rg1:J (2.91) BS01 MAN ? GO:0016020 ... A6QNK7 21857663
    1108 3rg1:L (2.91) BS02 MAN ? GO:0006955 ... A4IFT3 21857663
    1109 3rg1:L (2.91) BS03 MAN ? GO:0006955 ... A4IFT3 21857663
    1110 3rg1:L (2.91) BS04 MAN ? GO:0006955 ... A4IFT3 21857663
    1111 3rg1:M (2.91) BS01 MAN ? GO:0016020 ... A6QNK7 21857663
    1112 3rg1:N (2.91) BS01 MAN ? GO:0016020 ... A6QNK7 21857663
    1113 3rg1:O (2.91) BS01 MAN ? GO:0006955 ... A4IFT3 21857663
    1114 3rg1:O (2.91) BS02 MAN ? GO:0006955 ... A4IFT3 21857663
    1115 3rg1:O (2.91) BS03 MAN ? GO:0006955 ... A4IFT3 21857663
    1116 3rg1:P (2.91) BS01 MAN ? GO:0006955 ... A4IFT3 21857663
    1117 3rg1:P (2.91) BS02 MAN ? GO:0006955 ... A4IFT3 21857663
    1118 3rg1:P (2.91) BS03 MAN ? GO:0006955 ... A4IFT3 21857663
    1119 3rg1:P (2.91) BS04 MAN ? GO:0006955 ... A4IFT3 21857663
    1120 3rum:A (1.851) BS05 MAN ? GO:0005515 ... P0AEX9 22352468
    1121 3rwk:X (2.1) BS01 MAN 3.2.1.7 GO:0004553 ... O94220 22750808
    1122 3rwk:X (2.1) BS02 MAN 3.2.1.7 GO:0004553 ... O94220 22750808
    1123 3rwk:X (2.1) BS03 MAN 3.2.1.7 GO:0004553 ... O94220 22750808
    1124 3s5x:A (1.65) BS02 MAN ? GO:0005537 ... P84330 21827952
    1125 3s5x:A (1.65) BS03 MAN ? GO:0005537 ... P84330 21827952
    1126 3s5x:A (1.65) BS05 MAN ? GO:0005537 ... P84330 21827952
    1127 3s5x:A (1.65) BS06 MAN ? GO:0005537 ... P84330 21827952
    1128 3sc7:X (1.5) BS01 MAN 3.2.1.7 GO:0004553 ... O94220 22750808
    1129 3sc7:X (1.5) BS02 MAN 3.2.1.7 GO:0004553 ... O94220 22750808
    1130 3sqr:A (1.67) BS01 MAN 1.10.3.2 GO:0005507 ... H8ZRU2 25372682
    1131 3sqr:A (1.67) BS05 MAN 1.10.3.2 GO:0005507 ... H8ZRU2 25372682
    1132 3t5o:A (2.869) BS03 MAN ? GO:0001701 ... P13671 22267737
    1133 3t5o:A (2.869) BS04 MAN ? GO:0001701 ... P13671 22267737
    1134 3t5o:A (2.869) BS05 MAN ? GO:0001701 ... P13671 22267737
    1135 3t5o:A (2.869) BS06 MAN ? GO:0001701 ... P13671 22267737
    1136 3t6q:A (1.9) BS01 MAN ? GO:0002322 ... Q62192 21959264
    1137 3t6q:B (1.9) BS01 MAN ? GO:0002322 ... Q62192 21959264
    1138 3t6q:C (1.9) BS01 MAN ? GO:0005515 ... O88188 21959264
    1139 3t6q:C (1.9) BS02 MAN ? GO:0005515 ... O88188 21959264
    1140 3t6q:C (1.9) BS03 MAN ? GO:0005515 ... O88188 21959264
    1141 3t6q:D (1.9) BS01 MAN ? GO:0005515 ... O88188 21959264
    1142 3t6q:D (1.9) BS02 MAN ? GO:0005515 ... O88188 21959264
    1143 3t6q:D (1.9) BS03 MAN ? GO:0005515 ... O88188 21959264
    1144 3t91:A (2.64) BS03 MAN 3.1.3.16 N/A P37475 22115775
    1145 3t91:B (2.64) BS03 MAN 3.1.3.16 N/A P37475 22115775
    1146 3tgx:A (2.8) BS01 MAN ? GO:0004896 ... Q9HBE5 22235133
    1147 3tgx:A (2.8) BS02 MAN ? GO:0004896 ... Q9HBE5 22235133
    1148 3tgx:A (2.8) BS03 MAN ? GO:0004896 ... Q9HBE5 22235133
    1149 3tgx:C (2.8) BS01 MAN ? GO:0004896 ... Q9HBE5 22235133
    1150 3tgx:C (2.8) BS02 MAN ? GO:0004896 ... Q9HBE5 22235133
    1151 3tgx:E (2.8) BS01 MAN ? GO:0004896 ... Q9HBE5 22235133
    1152 3tgx:E (2.8) BS02 MAN ? GO:0004896 ... Q9HBE5 22235133
    1153 3tgx:G (2.8) BS01 MAN ? GO:0004896 ... Q9HBE5 22235133
    1154 3tgx:G (2.8) BS02 MAN ? GO:0004896 ... Q9HBE5 22235133
    1155 3tgx:I (2.8) BS01 MAN ? GO:0004896 ... Q9HBE5 22235133
    1156 3tgx:I (2.8) BS02 MAN ? GO:0004896 ... Q9HBE5 22235133
    1157 3tgx:K (2.8) BS01 MAN ? GO:0004896 ... Q9HBE5 22235133
    1158 3tgx:K (2.8) BS02 MAN ? GO:0004896 ... Q9HBE5 22235133
    1159 3tgx:M (2.8) BS01 MAN ? GO:0004896 ... Q9HBE5 22235133
    1160 3tgx:O (2.8) BS01 MAN ? GO:0004896 ... Q9HBE5 22235133
    1161 3tgx:O (2.8) BS02 MAN ? GO:0004896 ... Q9HBE5 22235133
    1162 3th0:A (1.75) BS02 MAN 3.2.1.- N/A P12528 23292517 PDBbind: -logKd/Ki=4.12, Kd=75.8uM
    1163 3tia:A (1.8) BS02 MAN 3.2.1.18 GO:0004308 ... Q194T1 22028647
    1164 3tia:B (1.8) BS02 MAN 3.2.1.18 GO:0004308 ... Q194T1 22028647
    1165 3tia:C (1.8) BS02 MAN 3.2.1.18 GO:0004308 ... Q194T1 22028647
    1166 3tia:D (1.8) BS02 MAN 3.2.1.18 GO:0004308 ... Q194T1 22028647
    1167 3tib:A (2.201) BS02 MAN 3.2.1.18 GO:0004308 ... Q194T1 22028647
    1168 3tib:B (2.201) BS02 MAN 3.2.1.18 GO:0004308 ... Q194T1 22028647
    1169 3tib:C (2.201) BS02 MAN 3.2.1.18 GO:0004308 ... Q194T1 22028647
    1170 3tib:D (2.201) BS02 MAN 3.2.1.18 GO:0004308 ... Q194T1 22028647
    1171 3tic:A (1.89) BS02 MAN 3.2.1.18 GO:0004308 ... Q194T1 22028647
    1172 3tic:B (1.89) BS02 MAN 3.2.1.18 GO:0004308 ... Q194T1 22028647
    1173 3tic:C (1.89) BS02 MAN 3.2.1.18 GO:0004308 ... Q194T1 22028647
    1174 3tic:D (1.89) BS02 MAN 3.2.1.18 GO:0004308 ... Q194T1 22028647
    1175 3tv3:H (1.29) BS01 MAN ? N/A P01857 21998254
    1176 3tv3:H (1.29) BS02 MAN ? N/A P01857 21998254
    1177 3tv3:L (1.29) BS01 MAN N/A N/A N/A 21998254
    1178 3twc:H (1.65) BS01 MAN ? N/A P01857 21998254
    1179 3twc:H (1.65) BS02 MAN ? N/A P01857 21998254
    1180 3twc:L (1.65) BS01 MAN N/A N/A N/A 21998254
    1181 3tyg:H (3.25) BS01 MAN ? N/A P01857 21998254
    1182 3tyg:H (3.25) BS03 MAN ? N/A P01857 21998254
    1183 3tyg:L (3.25) BS01 MAN ? GO:0002250 ... P0DOY2 21998254
    1184 3u2s:A (1.797) BS01 MAN N/A N/A N/A 22113616
    1185 3u2s:B (1.797) BS01 MAN N/A N/A N/A 22113616
    1186 3u2s:H (1.797) BS01 MAN N/A N/A N/A 22113616
    1187 3u2s:L (1.797) BS01 MAN N/A N/A N/A 22113616
    1188 3u4e:A (2.185) BS01 MAN N/A N/A N/A 22113616
    1189 3u4e:A (2.185) BS02 MAN N/A N/A N/A 22113616
    1190 3u4e:B (2.185) BS01 MAN N/A N/A N/A 22113616
    1191 3u4e:H (2.185) BS01 MAN N/A N/A N/A 22113616
    1192 3u4e:H (2.185) BS02 MAN N/A N/A N/A 22113616
    1193 3u4e:L (2.185) BS01 MAN N/A N/A N/A 22113616
    1194 3v8x:A (2.6) BS01 MAN ? GO:0005515 ... Q9K0U9 22327295
    1195 3v95:B (2.7) BS01 MAN ? N/A P01857 22553781
    1196 3v9c:A (2.0) BS01 MAN 1.10.3.2 GO:0005507 ... B2L9C1 N/A
    1197 3v9e:A (1.7) BS04 MAN N/A GO:0005507 ... N/A 25372682
    1198 3vi3:A (2.9) BS01 MAN ? GO:0007155 ... P08648 22451694
    1199 3vi3:C (2.9) BS01 MAN ? GO:0007155 ... P08648 22451694
    1200 3vkk:A (2.0) BS01 MAN 3.2.1.21
    3.2.1.45
    3.2.1.46
    GO:0004336 ... Q9H227 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417