Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 4535 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 13 14 15 16 17 18 19 20 21 22 23 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4401 8tgo:C (5.75) BS01 MAN N/A N/A N/A 38582771
    4402 8tgo:C (5.75) BS02 MAN N/A N/A N/A 38582771
    4403 8tgo:D (5.75) BS01 MAN N/A N/A N/A 38582771
    4404 8tgo:D (5.75) BS02 MAN N/A N/A N/A 38582771
    4405 8tgo:L (5.75) BS01 MAN N/A N/A N/A 38582771
    4406 8tgo:O (5.75) BS01 MAN N/A N/A N/A 38582771
    4407 8tgo:P (5.75) BS01 MAN N/A N/A N/A 38582771
    4408 8tgo:P (5.75) BS02 MAN N/A N/A N/A 38582771
    4409 8tgo:b (5.75) BS02 MAN N/A N/A N/A 38582771
    4410 8tgo:c (5.75) BS01 MAN N/A N/A N/A 38582771
    4411 8tgo:c (5.75) BS02 MAN N/A N/A N/A 38582771
    4412 8tgo:f (5.75) BS01 MAN N/A N/A N/A 38582771
    4413 8tjr:B (3.29) BS01 MAN N/A N/A Q2N0S6 N/A
    4414 8tjr:C (3.29) BS01 MAN N/A N/A Q2N0S6 N/A
    4415 8tjs:G (3.31) BS01 MAN N/A N/A Q2N0S6 N/A
    4416 8tjs:N (3.31) BS01 MAN N/A N/A Q2N0S6 N/A
    4417 8tjs:O (3.31) BS01 MAN N/A N/A Q2N0S6 N/A
    4418 8tq1:H (3.3) BS01 MAN N/A N/A N/A N/A
    4419 8ttw:C (2.96) BS02 MAN N/A N/A N/A 37872202
    4420 8ttw:C (2.96) BS03 MAN N/A N/A N/A 37872202
    4421 8ttw:C (2.96) BS04 MAN N/A N/A N/A 37872202
    4422 8ttw:E (2.96) BS01 MAN ? GO:0019031 ... Q2N0S6 37872202
    4423 8ttw:G (2.96) BS02 MAN N/A N/A N/A 37872202
    4424 8ttw:G (2.96) BS03 MAN N/A N/A N/A 37872202
    4425 8ttw:G (2.96) BS04 MAN N/A N/A N/A 37872202
    4426 8ttw:I (2.96) BS01 MAN ? GO:0019031 ... Q2N0S6 37872202
    4427 8ttw:K (2.96) BS02 MAN N/A N/A N/A 37872202
    4428 8ttw:K (2.96) BS03 MAN N/A N/A N/A 37872202
    4429 8ttw:K (2.96) BS04 MAN N/A N/A N/A 37872202
    4430 8ttw:N (2.96) BS01 MAN N/A N/A N/A 37872202
    4431 8ttw:N (2.96) BS02 MAN N/A N/A N/A 37872202
    4432 8ttw:P (2.96) BS01 MAN N/A N/A N/A 37872202
    4433 8ttw:R (2.96) BS01 MAN N/A N/A N/A 37872202
    4434 8ttw:R (2.96) BS02 MAN N/A N/A N/A 37872202
    4435 8tyc:A (3.3) BS01 MAN N/A N/A P08669 N/A
    4436 8tyc:B (3.3) BS01 MAN N/A N/A P08669 N/A
    4437 8tyc:C (3.3) BS01 MAN N/A N/A P08669 N/A
    4438 8tye:A (3.8) BS02 MAN N/A N/A P08669 39243373
    4439 8tye:L (3.8) BS01 MAN N/A N/A N/A 39243373
    4440 8tzo:C (3.1) BS02 MAN ? GO:0005509 ... P27797 37852257
    4441 8tzo:C (3.1) BS03 MAN ? GO:0005509 ... P27797 37852257
    4442 8tzr:C (3.5) BS02 MAN ? GO:0005509 ... P27797 N/A
    4443 8tzr:C (3.5) BS03 MAN ? GO:0005509 ... P27797 N/A
    4444 8u48:A (1.9) BS02 MAN ? GO:0004553 ... Q8A889 38879612
    4445 8u48:A (1.9) BS03 MAN ? GO:0004553 ... Q8A889 38879612
    4446 8u48:A (1.9) BS04 MAN ? GO:0004553 ... Q8A889 38879612
    4447 8u48:A (1.9) BS05 MAN ? GO:0004553 ... Q8A889 38879612
    4448 8u48:A (1.9) BS06 MAN ? GO:0004553 ... Q8A889 38879612
    4449 8u48:B (1.9) BS02 MAN ? GO:0004553 ... Q8A889 38879612
    4450 8u48:B (1.9) BS03 MAN ? GO:0004553 ... Q8A889 38879612
    4451 8u48:B (1.9) BS04 MAN ? GO:0004553 ... Q8A889 38879612
    4452 8u48:B (1.9) BS05 MAN ? GO:0004553 ... Q8A889 38879612
    4453 8u48:B (1.9) BS06 MAN ? GO:0004553 ... Q8A889 38879612
    4454 8u4j:B (3.7) BS01 MAN 2.7.10.1 N/A Q15303 38498590
    4455 8uwa:B (4.02) BS01 MAN ? GO:0019031 ... C6KNH7 38670113
    4456 8v05:A (2.08) BS01 MAN 3.1.16.1 GO:0003824 ... O35405 38537643
    4457 8v06:B (2.73) BS02 MAN 3.1.16.1 GO:0003824 ... O35405 38537643
    4458 8v07:B (1.99) BS01 MAN 3.1.16.1 GO:0003824 ... O35405 38537643
    4459 8v07:B (1.99) BS02 MAN 3.1.16.1 GO:0003824 ... O35405 38537643
    4460 8v07:C (1.99) BS01 MAN 3.1.16.1 GO:0003824 ... O35405 38537643
    4461 8vcv:A (2.8) BS02 MAN N/A N/A P08669 39243373
    4462 8vcv:B (2.8) BS01 MAN N/A N/A P08669 39243373
    4463 8vcv:C (2.8) BS01 MAN N/A N/A P08669 39243373
    4464 8ve8:A (2.8) BS01 MAN N/A N/A P08669 39243373
    4465 8ve8:B (2.8) BS01 MAN N/A N/A P08669 39243373
    4466 8ve8:C (2.8) BS01 MAN N/A N/A P08669 39243373
    4467 8vqr:B (2.565) BS01 MAN 3.4.-.-
    3.4.17.-
    3.4.17.23
    GO:0006508 ... B4XEP4
    Q9BYF1
    N/A
    4468 8vqy:E (2.82) BS01 MAN N/A N/A P18507 38898000
    4469 8vqy:E (2.82) BS02 MAN N/A N/A P18507 38898000
    4470 8vrn:D (2.57) BS01 MAN N/A N/A P14867 38898000
    4471 8vrn:E (2.57) BS01 MAN N/A N/A P18507 38898000
    4472 8vrn:E (2.57) BS02 MAN N/A N/A P18507 38898000
    4473 8w4n:A (3.1) BS02 MAN N/A N/A N/A 38938812
    4474 8wa2:A (3.0) BS25 MAN ? N/A A8J9H7 38552612
    4475 8wa2:B (3.0) BS31 MAN ? N/A A8J9H7 38552612
    4476 8wa2:E (3.0) BS30 MAN ? N/A A8J9H7 38552612
    4477 8wa2:F (3.0) BS32 MAN ? N/A A8J9H7 38552612
    4478 8wku:B (3.5) BS01 MAN N/A N/A A0AAE8ZFM2 38877169
    4479 8wku:B (3.5) BS02 MAN N/A N/A A0AAE8ZFM2 38877169
    4480 8wmg:A (1.97) BS02 MAN ? GO:0030246 ... P02866 N/A
    4481 8wmg:A (1.97) BS03 MAN ? GO:0030246 ... P02866 N/A
    4482 8wmk:A (2.17) BS02 MAN ? GO:0030246 ... P02866 N/A
    4483 8x8g:A (2.27) BS02 MAN N/A N/A N/A 38938812
    4484 8x8g:A (2.27) BS03 MAN N/A N/A N/A 38938812
    4485 8xlm:D (3.22) BS01 MAN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 38961765
    4486 8xln:D (3.78) BS01 MAN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 38961765
    4487 8y6a:D (2.72) BS01 MAN N/A N/A N/A 39013463
    4488 8zuh:A (3.2) BS02 MAN N/A N/A Q3SX24 39171510
    4489 8zuh:B (3.2) BS01 MAN N/A N/A Q3ZCF3 39171510
    4490 8zuh:C (3.2) BS02 MAN N/A N/A Q3SX24 39171510
    4491 9at9:B (1.34) BS01 MAN N/A N/A B0LF88 N/A
    4492 9avu:A (2.45) BS01 MAN N/A GO:0003009 ... P02709 39085615
    4493 9avu:C (2.45) BS01 MAN N/A GO:0003009 ... P02709 39085615
    4494 9avv:C (2.09) BS01 MAN N/A GO:0003009 ... P02709 39085615
    4495 9avv:D (2.09) BS01 MAN N/A GO:0005886 ... P04759 39085615
    4496 9avv:F (2.09) BS01 MAN N/A N/A N/A 39085615
    4497 9avv:G (2.09) BS01 MAN N/A N/A N/A 39085615
    4498 9awj:A (2.45) BS01 MAN N/A GO:0003009 ... P02709 39085615
    4499 9awj:C (2.45) BS01 MAN N/A GO:0003009 ... P02709 39085615
    4500 9awk:A (2.14) BS01 MAN N/A GO:0003009 ... P02709 39085615
    4501 9awk:C (2.14) BS01 MAN N/A GO:0003009 ... P02709 39085615
    4502 9awk:D (2.14) BS01 MAN N/A GO:0005886 ... P04759 39085615
    4503 9awk:F (2.14) BS01 MAN N/A N/A N/A 39085615
    4504 9awk:G (2.14) BS01 MAN N/A N/A N/A 39085615
    4505 9b36:C (4.29) BS01 MAN ? N/A P42260 38778115
    4506 9b36:E (4.29) BS01 MAN ? GO:0005509 ... C0HJY1 38778115
    4507 9b36:F (4.29) BS01 MAN ? GO:0005509 ... C0HJY1 38778115
    4508 9b36:G (4.29) BS01 MAN ? GO:0005509 ... C0HJY1 38778115
    4509 9b36:H (4.29) BS01 MAN ? GO:0005509 ... C0HJY1 38778115
    4510 9b37:F (6.66) BS01 MAN ? GO:0005509 ... C0HJY1 38778115
    4511 9b38:A (3.36) BS02 MAN ? N/A P42260 38778115
    4512 9b38:C (3.36) BS02 MAN ? N/A P42260 38778115
    4513 9b39:A (3.84) BS01 MAN ? N/A P42260 38778115
    4514 9b8o:a (3.2) BS01 MAN N/A GO:0000220 ... P25286 38900912
    4515 9bew:K (3.3) BS01 MAN N/A N/A N/A 39028623
    4516 9bew:K (3.3) BS02 MAN N/A N/A N/A 39028623
    4517 9bew:L (3.3) BS01 MAN N/A N/A N/A 39028623
    4518 9bew:R (3.3) BS01 MAN N/A N/A N/A 39028623
    4519 9bge:D (4.2) BS01 MAN N/A N/A N/A 39240111
    4520 9bge:F (4.2) BS01 MAN N/A N/A N/A 39240111
    4521 9bge:H (4.2) BS01 MAN N/A N/A N/A 39240111
    4522 9brd:a (3.5) BS02 MAN N/A GO:0000220 ... P25286 38900912
    4523 9c4i:A (1.3) BS02 MAN N/A GO:0005537 ... C0HK20 N/A
    4524 9c4i:B (1.3) BS02 MAN N/A GO:0005537 ... C0HK20 N/A
    4525 9cj7:A (3.0) BS01 MAN N/A N/A P08669 39243373
    4526 9cj7:B (3.0) BS01 MAN N/A N/A P08669 39243373
    4527 9cj7:C (3.0) BS01 MAN N/A N/A P08669 39243373
    4528 9ckv:A (3.19) BS01 MAN N/A N/A P08648 N/A
    4529 9ckv:A (3.19) BS02 MAN N/A N/A P08648 N/A
    4530 9eqg:C (2.4) BS01 MAN N/A N/A P18507 39261733
    4531 9eqg:D (2.4) BS01 MAN N/A N/A P14867 39261733
    4532 9f40:A (2.44) BS01 MAN ? N/A Q12200 N/A
    4533 9f40:D (2.44) BS01 MAN ? N/A Q12200 N/A
    4534 9f41:C (2.64) BS01 MAN ? N/A Q12200 N/A
    4535 9f41:D (2.64) BS01 MAN ? N/A Q12200 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417