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BioLiP
Download all results in tab-seperated text for 4535 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4201 8jn4:H (3.5) BS01 MAN N/A N/A N/A N/A
    4202 8jtd:J (4.9) BS02 MAN N/A N/A N/A 38665238
    4203 8jtd:N (4.9) BS01 MAN N/A N/A N/A 38665238
    4204 8jtm:J (5.14) BS02 MAN N/A N/A N/A 38665238
    4205 8jxj:A (3.9) BS01 MAN N/A N/A P98158 38771880
    4206 8jyn:D (3.04) BS01 MAN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 N/A
    4207 8jyo:D (3.2) BS01 MAN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 N/A
    4208 8jyo:E (3.2) BS01 MAN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 N/A
    4209 8jyp:D (3.38) BS01 MAN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 N/A
    4210 8k9r:A (2.68) BS02 MAN 3.1.-.- GO:0005783 ... G0S652 38167496
    4211 8k9t:A (2.66) BS02 MAN 3.1.-.- GO:0005783 ... G0S652 38167496
    4212 8kb7:A (2.8) BS02 MAN N/A N/A Q8NAT1 N/A
    4213 8kb7:B (2.8) BS02 MAN N/A N/A Q8NAT1 N/A
    4214 8kb7:C (2.8) BS02 MAN N/A N/A Q8NAT1 N/A
    4215 8kb7:D (2.8) BS02 MAN N/A N/A Q8NAT1 N/A
    4216 8og1:A (1.58) BS02 MAN 2.4.1.223 GO:0000287 ... O43909 37828045
    4217 8ok4:A (1.23) BS02 MAN ? GO:0005886 ... B3GVS7 37656766
    4218 8ok5:A (1.27) BS02 MAN ? N/A B3GVS7 37656766
    4219 8ok6:A (1.75) BS02 MAN ? GO:0005886 ... B3GVS7 37656766
    4220 8ok7:A (1.74) BS01 MAN ? N/A M4T0B2 37656766
    4221 8ok7:B (1.74) BS01 MAN ? N/A M4T0B2 37656766
    4222 8ok7:B (1.74) BS02 MAN ? N/A M4T0B2 37656766
    4223 8ok7:B (1.74) BS03 MAN ? N/A M4T0B2 37656766
    4224 8ok7:C (1.74) BS01 MAN ? N/A M4T0B2 37656766
    4225 8ok7:D (1.74) BS01 MAN ? N/A M4T0B2 37656766
    4226 8ok7:D (1.74) BS02 MAN ? N/A M4T0B2 37656766
    4227 8onh:A (2.59) BS02 MAN ? N/A B3GVS7 37656766
    4228 8onh:B (2.59) BS02 MAN ? N/A B3GVS7 37656766
    4229 8onh:B (2.59) BS03 MAN ? N/A B3GVS7 37656766
    4230 8onh:G (2.59) BS02 MAN ? N/A B3GVS7 37656766
    4231 8onh:G (2.59) BS03 MAN ? N/A B3GVS7 37656766
    4232 8onh:J (2.59) BS02 MAN ? N/A B3GVS7 37656766
    4233 8onh:N (2.59) BS02 MAN ? N/A B3GVS7 37656766
    4234 8ozp:L (11.9) BS01 MAN N/A N/A A0A1Q1N9U9 39013471
    4235 8p2x:A (3.59) BS01 MAN 3.4.17.-
    3.4.17.23    		 GO:0001618 ... Q9BYF1 38951531
    4236 8p2x:B (3.59) BS01 MAN 3.4.17.-
    3.4.17.23    		 GO:0001618 ... Q9BYF1 38951531
    4237 8p30:A (3.29) BS01 MAN 3.4.17.-
    3.4.17.23    		 GO:0001618 ... Q9BYF1 38951531
    4238 8p30:B (3.29) BS01 MAN 3.4.17.-
    3.4.17.23    		 GO:0001618 ... Q9BYF1 38951531
    4239 8pe1:A (1.9) BS01 MAN N/A N/A P0C956 38856634
    4240 8pe1:A (1.9) BS02 MAN N/A N/A P0C956 38856634
    4241 8pe1:A (1.9) BS03 MAN N/A N/A P0C956 38856634
    4242 8pe1:A (1.9) BS04 MAN N/A N/A P0C956 38856634
    4243 8pe1:A (1.9) BS05 MAN N/A N/A P0C956 38856634
    4244 8pe1:A (1.9) BS06 MAN N/A N/A P0C956 38856634
    4245 8pe1:B (1.9) BS01 MAN N/A N/A P0C956 38856634
    4246 8pe1:B (1.9) BS02 MAN N/A N/A P0C956 38856634
    4247 8pe1:B (1.9) BS03 MAN N/A N/A P0C956 38856634
    4248 8pe1:B (1.9) BS04 MAN N/A N/A P0C956 38856634
    4249 8pe1:B (1.9) BS05 MAN N/A N/A P0C956 38856634
    4250 8pe2:A (2.05) BS01 MAN N/A N/A P0C956 38856634
    4251 8pe2:A (2.05) BS02 MAN N/A N/A P0C956 38856634
    4252 8pe2:A (2.05) BS03 MAN N/A N/A P0C956 38856634
    4253 8pmr:B (1.94) BS01 MAN 3.2.2.-
    3.2.2.5    		 GO:0050135 ... Q4WL81 37934975
    4254 8pn9:A (3.61) BS01 MAN 2.4.99.18 GO:0004576 ... P46977 38670073
    4255 8pn9:F (3.61) BS01 MAN ? GO:0006487 ... P04844 38670073
    4256 8pn9:G (3.61) BS01 MAN ? GO:0005789 ... P39656 38670073
    4257 8po9:A (2.2) BS01 MAN ? N/A Q24995 37729416
    4258 8po9:B (2.2) BS01 MAN ? N/A Q24995 37729416
    4259 8po9:C (2.2) BS01 MAN ? N/A Q24995 37729416
    4260 8po9:D (2.2) BS01 MAN ? N/A Q24995 37729416
    4261 8q5u:D (3.0) BS02 MAN N/A GO:0004553 ... T1WGN1 38569940
    4262 8q5u:F (3.0) BS02 MAN N/A GO:0004553 ... T1WGN1 38569940
    4263 8q6r:C (1.9) BS02 MAN N/A N/A P27918 N/A
    4264 8q6r:C (1.9) BS03 MAN N/A N/A P27918 N/A
    4265 8q6r:D (1.9) BS02 MAN N/A N/A P27918 N/A
    4266 8q6r:D (1.9) BS03 MAN N/A N/A P27918 N/A
    4267 8q6r:D (1.9) BS04 MAN N/A N/A P27918 N/A
    4268 8q6r:D (1.9) BS05 MAN N/A N/A P27918 N/A
    4269 8q6r:D (1.9) BS06 MAN N/A N/A P27918 N/A
    4270 8q6r:D (1.9) BS07 MAN N/A N/A P27918 N/A
    4271 8q6r:D (1.9) BS08 MAN N/A N/A P27918 N/A
    4272 8q6r:D (1.9) BS09 MAN N/A N/A P27918 N/A
    4273 8q6r:E (1.9) BS02 MAN N/A N/A P27918 N/A
    4274 8q6r:E (1.9) BS03 MAN N/A N/A P27918 N/A
    4275 8q6r:F (1.9) BS02 MAN N/A N/A P27918 N/A
    4276 8q6r:F (1.9) BS03 MAN N/A N/A P27918 N/A
    4277 8q6r:F (1.9) BS04 MAN N/A N/A P27918 N/A
    4278 8q6r:F (1.9) BS05 MAN N/A N/A P27918 N/A
    4279 8q6r:F (1.9) BS06 MAN N/A N/A P27918 N/A
    4280 8q6r:F (1.9) BS07 MAN N/A N/A P27918 N/A
    4281 8q6r:F (1.9) BS08 MAN N/A N/A P27918 N/A
    4282 8q6r:F (1.9) BS09 MAN N/A N/A P27918 N/A
    4283 8qpx:A (2.1) BS01 MAN N/A N/A O18431 N/A
    4284 8rke:B (2.7) BS01 MAN ? N/A Q05996 38490181
    4285 8rke:B (2.7) BS02 MAN ? N/A Q05996 38490181
    4286 8rkh:A (1.9) BS01 MAN ? N/A P20239 38490181
    4287 8rmj:A (2.79) BS01 MAN N/A N/A A1ZAF5 39042673
    4288 8rzl:A (2.65) BS02 MAN ? N/A Q4JBK8 N/A
    4289 8rzl:B (2.65) BS02 MAN ? N/A Q4JBK8 N/A
    4290 8rzl:C (2.65) BS02 MAN ? N/A Q4JBK8 N/A
    4291 8rzl:D (2.65) BS02 MAN ? N/A Q4JBK8 N/A
    4292 8rzl:E (2.65) BS02 MAN ? N/A Q4JBK8 N/A
    4293 8s2e:E (3.8) BS01 MAN N/A N/A N/A 38903123
    4294 8san:D (4.6) BS01 MAN N/A N/A N/A 37188681
    4295 8san:H (4.6) BS01 MAN N/A N/A N/A 37188681
    4296 8san:L (4.6) BS01 MAN N/A N/A N/A 37188681
    4297 8saq:C (3.9) BS01 MAN N/A N/A N/A 37188681
    4298 8saq:H (3.9) BS01 MAN N/A N/A N/A 37188681
    4299 8saq:M (3.9) BS01 MAN N/A N/A N/A 37188681
    4300 8sar:D (3.82) BS01 MAN N/A N/A N/A 37188681
    4301 8sar:D (3.82) BS02 MAN N/A N/A N/A 37188681
    4302 8sar:I (3.82) BS01 MAN N/A N/A N/A 37188681
    4303 8sar:I (3.82) BS02 MAN N/A N/A N/A 37188681
    4304 8sar:M (3.82) BS01 MAN N/A N/A N/A 37188681
    4305 8sar:N (3.82) BS01 MAN N/A N/A N/A 37188681
    4306 8sar:N (3.82) BS02 MAN N/A N/A N/A 37188681
    4307 8sas:D (4.0) BS01 MAN N/A N/A N/A 37188681
    4308 8sas:D (4.0) BS02 MAN N/A N/A N/A 37188681
    4309 8sas:I (4.0) BS01 MAN N/A N/A N/A 37188681
    4310 8sas:N (4.0) BS01 MAN N/A N/A N/A 37188681
    4311 8sau:C (3.3) BS01 MAN N/A N/A N/A 37188681
    4312 8sau:C (3.3) BS02 MAN N/A N/A N/A 37188681
    4313 8sau:D (3.3) BS01 MAN N/A N/A N/A 37188681
    4314 8sau:D (3.3) BS02 MAN N/A N/A N/A 37188681
    4315 8sau:D (3.3) BS03 MAN N/A N/A N/A 37188681
    4316 8sau:H (3.3) BS01 MAN N/A N/A N/A 37188681
    4317 8sau:H (3.3) BS02 MAN N/A N/A N/A 37188681
    4318 8sau:I (3.3) BS01 MAN N/A N/A N/A 37188681
    4319 8sau:I (3.3) BS02 MAN N/A N/A N/A 37188681
    4320 8sau:M (3.3) BS01 MAN N/A N/A N/A 37188681
    4321 8sau:M (3.3) BS02 MAN N/A N/A N/A 37188681
    4322 8sau:N (3.3) BS01 MAN N/A N/A N/A 37188681
    4323 8sau:N (3.3) BS02 MAN N/A N/A N/A 37188681
    4324 8sax:D (4.0) BS01 MAN N/A N/A N/A 37188681
    4325 8sax:H (4.0) BS01 MAN N/A N/A N/A 37188681
    4326 8sax:L (4.0) BS01 MAN N/A N/A N/A 37188681
    4327 8say:D (3.4) BS01 MAN N/A N/A N/A 37188681
    4328 8say:H (3.4) BS01 MAN N/A N/A N/A 37188681
    4329 8say:I (3.4) BS01 MAN N/A N/A N/A 37188681
    4330 8say:I (3.4) BS02 MAN N/A N/A N/A 37188681
    4331 8say:N (3.4) BS01 MAN N/A N/A N/A 37188681
    4332 8saz:C (3.9) BS01 MAN N/A N/A N/A 37188681
    4333 8saz:C (3.9) BS02 MAN N/A N/A N/A 37188681
    4334 8saz:C (3.9) BS03 MAN N/A N/A N/A 37188681
    4335 8saz:D (3.9) BS01 MAN N/A N/A N/A 37188681
    4336 8saz:D (3.9) BS02 MAN N/A N/A N/A 37188681
    4337 8saz:H (3.9) BS01 MAN N/A N/A N/A 37188681
    4338 8saz:H (3.9) BS02 MAN N/A N/A N/A 37188681
    4339 8saz:I (3.9) BS01 MAN N/A N/A N/A 37188681
    4340 8saz:I (3.9) BS02 MAN N/A N/A N/A 37188681
    4341 8saz:M (3.9) BS01 MAN N/A N/A N/A 37188681
    4342 8saz:N (3.9) BS01 MAN N/A N/A N/A 37188681
    4343 8saz:N (3.9) BS02 MAN N/A N/A N/A 37188681
    4344 8sb0:C (4.2) BS01 MAN N/A N/A N/A 37188681
    4345 8sb0:C (4.2) BS02 MAN N/A N/A N/A 37188681
    4346 8sb0:D (4.2) BS01 MAN N/A N/A N/A 37188681
    4347 8sb0:D (4.2) BS02 MAN N/A N/A N/A 37188681
    4348 8sb0:H (4.2) BS01 MAN N/A N/A N/A 37188681
    4349 8sb0:H (4.2) BS02 MAN N/A N/A N/A 37188681
    4350 8sb0:H (4.2) BS03 MAN N/A N/A N/A 37188681
    4351 8sb0:I (4.2) BS01 MAN N/A N/A N/A 37188681
    4352 8sb0:M (4.2) BS01 MAN N/A N/A N/A 37188681
    4353 8sb0:M (4.2) BS02 MAN N/A N/A N/A 37188681
    4354 8sb0:N (4.2) BS01 MAN N/A N/A N/A 37188681
    4355 8sb1:D (4.3) BS01 MAN N/A N/A N/A 37188681
    4356 8sb1:D (4.3) BS02 MAN N/A N/A N/A 37188681
    4357 8sb1:D (4.3) BS03 MAN N/A N/A N/A 37188681
    4358 8sb1:I (4.3) BS01 MAN N/A N/A N/A 37188681
    4359 8sb1:I (4.3) BS02 MAN N/A N/A N/A 37188681
    4360 8sb1:I (4.3) BS03 MAN N/A N/A N/A 37188681
    4361 8sb1:N (4.3) BS01 MAN N/A N/A N/A 37188681
    4362 8sb1:N (4.3) BS02 MAN N/A N/A N/A 37188681
    4363 8sb1:N (4.3) BS03 MAN N/A N/A N/A 37188681
    4364 8sb2:D (3.5) BS01 MAN N/A N/A N/A 37188681
    4365 8sb2:D (3.5) BS02 MAN N/A N/A N/A 37188681
    4366 8sb2:I (3.5) BS01 MAN N/A N/A N/A 37188681
    4367 8sb2:I (3.5) BS02 MAN N/A N/A N/A 37188681
    4368 8sb2:N (3.5) BS01 MAN N/A N/A N/A 37188681
    4369 8sb2:N (3.5) BS02 MAN N/A N/A N/A 37188681
    4370 8sb3:C (4.1) BS02 MAN N/A N/A N/A 37188681
    4371 8sb3:D (4.1) BS01 MAN N/A N/A N/A 37188681
    4372 8sb3:H (4.1) BS02 MAN N/A N/A N/A 37188681
    4373 8sb3:I (4.1) BS01 MAN N/A N/A N/A 37188681
    4374 8sb3:M (4.1) BS02 MAN N/A N/A N/A 37188681
    4375 8sb3:M (4.1) BS03 MAN N/A N/A N/A 37188681
    4376 8sb3:N (4.1) BS01 MAN N/A N/A N/A 37188681
    4377 8sb4:C (3.6) BS01 MAN N/A N/A N/A 37188681
    4378 8sb4:D (3.6) BS01 MAN N/A N/A N/A 37188681
    4379 8sb4:D (3.6) BS02 MAN N/A N/A N/A 37188681
    4380 8sb4:I (3.6) BS01 MAN N/A N/A N/A 37188681
    4381 8sb4:M (3.6) BS01 MAN N/A N/A N/A 37188681
    4382 8sb4:N (3.6) BS01 MAN N/A N/A N/A 37188681
    4383 8sb4:N (3.6) BS02 MAN N/A N/A N/A 37188681
    4384 8sb5:D (3.9) BS01 MAN N/A N/A N/A 37188681
    4385 8sb5:D (3.9) BS02 MAN N/A N/A N/A 37188681
    4386 8sb5:I (3.9) BS01 MAN N/A N/A N/A 37188681
    4387 8sb5:I (3.9) BS02 MAN N/A N/A N/A 37188681
    4388 8sb5:I (3.9) BS03 MAN N/A N/A N/A 37188681
    4389 8sb5:I (3.9) BS04 MAN N/A N/A N/A 37188681
    4390 8sb5:M (3.9) BS01 MAN N/A N/A N/A 37188681
    4391 8sb5:N (3.9) BS01 MAN N/A N/A N/A 37188681
    4392 8sb5:N (3.9) BS02 MAN N/A N/A N/A 37188681
    4393 8sb5:N (3.9) BS03 MAN N/A N/A N/A 37188681
    4394 8sgo:E (2.65) BS01 MAN ? GO:0004888 ... P18507 37607940
    4395 8si9:E (2.98) BS01 MAN ? GO:0004888 ... P18507 37607940
    4396 8sid:E (2.71) BS01 MAN ? GO:0004888 ... P18507 37607940
    4397 8suf:C (4.0) BS01 MAN ? N/A Q9N5Z3 N/A
    4398 8t5c:I (4.7) BS01 MAN N/A N/A N/A 38177144
    4399 8t5c:L (4.7) BS01 MAN N/A N/A N/A 38177144
    4400 8t5c:L (4.7) BS02 MAN N/A N/A N/A 38177144
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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