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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

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BioLiP
Download all results in tab-seperated text for 4535 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4001 8d50:L (4.32) BS01 MAN N/A N/A N/A N/A
    4002 8d50:L (4.32) BS02 MAN N/A N/A N/A N/A
    4003 8d53:G (3.24) BS01 MAN N/A N/A N/A N/A
    4004 8d53:L (3.24) BS01 MAN N/A N/A N/A N/A
    4005 8d53:L (3.24) BS02 MAN N/A N/A N/A N/A
    4006 8dd2:D (2.9) BS01 MAN ? GO:0004888 ... P14867 35933426
    4007 8dd2:E (2.9) BS01 MAN ? GO:0004888 ... P18507 35933426
    4008 8dd3:D (2.9) BS01 MAN ? GO:0004888 ... P14867 35933426
    4009 8dd3:E (2.9) BS01 MAN ? GO:0004888 ... P18507 35933426
    4010 8dok:C (3.2) BS02 MAN N/A N/A N/A 37872202
    4011 8dok:C (3.2) BS03 MAN N/A N/A N/A 37872202
    4012 8dok:C (3.2) BS04 MAN N/A N/A N/A 37872202
    4013 8dok:G (3.2) BS02 MAN N/A N/A N/A 37872202
    4014 8dok:G (3.2) BS03 MAN N/A N/A N/A 37872202
    4015 8dok:K (3.2) BS02 MAN N/A N/A N/A 37872202
    4016 8dok:K (3.2) BS03 MAN N/A N/A N/A 37872202
    4017 8dok:K (3.2) BS04 MAN N/A N/A N/A 37872202
    4018 8dow:C (3.69) BS01 MAN N/A N/A N/A N/A
    4019 8dow:D (3.69) BS01 MAN N/A N/A N/A N/A
    4020 8dow:D (3.69) BS02 MAN N/A N/A N/A N/A
    4021 8dow:G (3.69) BS01 MAN N/A N/A N/A N/A
    4022 8dow:H (3.69) BS01 MAN N/A N/A N/A N/A
    4023 8dow:H (3.69) BS02 MAN N/A N/A N/A N/A
    4024 8dow:K (3.69) BS01 MAN N/A N/A N/A N/A
    4025 8dow:L (3.69) BS01 MAN N/A N/A N/A N/A
    4026 8dow:L (3.69) BS02 MAN N/A N/A N/A N/A
    4027 8dp1:E (3.46) BS01 MAN N/A N/A N/A N/A
    4028 8dp1:E (3.46) BS02 MAN N/A N/A N/A N/A
    4029 8dp1:F (3.46) BS01 MAN N/A N/A N/A N/A
    4030 8dp1:F (3.46) BS02 MAN N/A N/A N/A N/A
    4031 8dp1:F (3.46) BS03 MAN N/A N/A N/A N/A
    4032 8dp1:M (3.46) BS01 MAN N/A N/A N/A N/A
    4033 8dp1:M (3.46) BS02 MAN N/A N/A N/A N/A
    4034 8dp1:N (3.46) BS02 MAN N/A N/A N/A N/A
    4035 8dp1:O (3.46) BS01 MAN N/A N/A N/A N/A
    4036 8dp1:O (3.46) BS02 MAN N/A N/A N/A N/A
    4037 8dp1:R (3.46) BS02 MAN N/A N/A N/A N/A
    4038 8dpl:C (2.53) BS01 MAN N/A N/A N/A 37938974
    4039 8dpl:C (2.53) BS02 MAN N/A N/A N/A 37938974
    4040 8dpl:H (2.53) BS01 MAN N/A N/A N/A 37938974
    4041 8dpl:H (2.53) BS02 MAN N/A N/A N/A 37938974
    4042 8dpl:O (2.53) BS01 MAN N/A N/A N/A 37938974
    4043 8dpl:O (2.53) BS02 MAN N/A N/A N/A 37938974
    4044 8dpm:C (3.0) BS01 MAN N/A N/A N/A 37938974
    4045 8dpm:C (3.0) BS02 MAN N/A N/A N/A 37938974
    4046 8dpm:H (3.0) BS01 MAN N/A N/A N/A 37938974
    4047 8dpm:H (3.0) BS02 MAN N/A N/A N/A 37938974
    4048 8dpm:M (3.0) BS01 MAN N/A N/A N/A 37938974
    4049 8dpm:M (3.0) BS02 MAN N/A N/A N/A 37938974
    4050 8dto:D (3.57) BS01 MAN N/A N/A N/A 38670093
    4051 8dto:D (3.57) BS02 MAN N/A N/A N/A 38670093
    4052 8dto:D (3.57) BS03 MAN N/A N/A N/A 38670093
    4053 8dto:H (3.57) BS01 MAN N/A N/A N/A 38670093
    4054 8dto:H (3.57) BS02 MAN N/A N/A N/A 38670093
    4055 8dto:H (3.57) BS03 MAN N/A N/A N/A 38670093
    4056 8dto:L (3.57) BS01 MAN N/A N/A N/A 38670093
    4057 8dto:L (3.57) BS02 MAN N/A N/A N/A 38670093
    4058 8dvd:H (4.12) BS02 MAN N/A N/A N/A 36344847
    4059 8dvd:L (4.12) BS01 MAN N/A N/A N/A 36344847
    4060 8dy6:C (4.32) BS01 MAN N/A N/A N/A 38670093
    4061 8dy6:D (4.32) BS01 MAN N/A N/A N/A 38670093
    4062 8dy6:G (4.32) BS01 MAN N/A N/A N/A 38670093
    4063 8dy6:H (4.32) BS01 MAN N/A N/A N/A 38670093
    4064 8dy6:H (4.32) BS02 MAN N/A N/A N/A 38670093
    4065 8dy6:L (4.32) BS01 MAN N/A N/A N/A 38670093
    4066 8e1p:A (3.82) BS01 MAN N/A N/A N/A 37044090
    4067 8e1p:C (3.82) BS01 MAN N/A N/A N/A 37044090
    4068 8e1p:J (3.82) BS01 MAN N/A N/A N/A 37044090
    4069 8ejd:a (3.8) BS01 MAN ? GO:0016829 ... P08669 37209096
    4070 8ejd:b (3.8) BS01 MAN ? GO:0016829 ... P08669 37209096
    4071 8ejd:c (3.8) BS01 MAN ? GO:0016829 ... P08669 37209096
    4072 8ejh:H (3.71) BS01 MAN N/A N/A N/A 37209096
    4073 8ejh:J (3.71) BS01 MAN N/A N/A N/A 37209096
    4074 8ejh:h (3.71) BS01 MAN N/A N/A N/A 37209096
    4075 8eji:A (3.81) BS01 MAN ? GO:0019031 ... P08669 37209096
    4076 8ejj:A (3.22) BS01 MAN ? GO:0019031 ... P08669 37209096
    4077 8ejj:B (3.22) BS01 MAN ? GO:0019031 ... P08669 37209096
    4078 8ejj:C (3.22) BS01 MAN ? GO:0019031 ... P08669 37209096
    4079 8f0o:B (2.99) BS01 MAN ? GO:0005216 ... P42260 N/A
    4080 8f6y:D (2.79) BS01 MAN ? GO:0004888 ... P02710 37264005
    4081 8f6z:D (2.7) BS01 MAN ? GO:0004888 ... P02710 37264005
    4082 8fad:C (4.0) BS01 MAN ? GO:0016020 ... B0FDK7 37202420
    4083 8fae:A (3.8) BS01 MAN ? GO:0019031 ... O40222 37202420
    4084 8fae:C (3.8) BS01 MAN ? GO:0019031 ... O40222 37202420
    4085 8fcz:C (3.7) BS02 MAN N/A N/A N/A 37626045
    4086 8fd1:C (4.25) BS02 MAN N/A N/A N/A 37626045
    4087 8fk5:L (3.4) BS01 MAN ? GO:0005576 ... Q6PJG0 37436900
    4088 8fl1:H (3.75) BS01 MAN N/A N/A N/A 37436900
    4089 8flw:H (3.58) BS02 MAN N/A N/A N/A 37436900
    4090 8foi:D (2.5) BS01 MAN ? GO:0004888 ... P22723 37730991
    4091 8g04:B (3.4) BS01 MAN ? GO:0001780 ... P40238 37633268
    4092 8g04:B (3.4) BS02 MAN ? GO:0001780 ... P40238 37633268
    4093 8g04:C (3.4) BS01 MAN ? GO:0001780 ... P40238 37633268
    4094 8g30:M (3.1) BS02 MAN 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    4095 8g30:N (3.1) BS02 MAN 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    4096 8g30:O (3.1) BS02 MAN 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    4097 8g30:P (3.1) BS02 MAN 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    4098 8g3o:B (3.1) BS02 MAN 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    4099 8g3o:G (3.1) BS02 MAN 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    4100 8g3o:H (3.1) BS02 MAN 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    4101 8g3o:J (3.1) BS02 MAN 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    4102 8g3p:A (2.5) BS02 MAN 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    4103 8g3p:B (2.5) BS02 MAN 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    4104 8g3p:D (2.5) BS02 MAN 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    4105 8g3p:E (2.5) BS02 MAN 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    4106 8g3q:E (2.3) BS02 MAN 3.2.1.18 GO:0004308 ... V9SU56 37258672
    4107 8g3q:F (2.3) BS02 MAN 3.2.1.18 GO:0004308 ... V9SU56 37258672
    4108 8g3q:G (2.3) BS02 MAN 3.2.1.18 GO:0004308 ... V9SU56 37258672
    4109 8g3q:H (2.3) BS02 MAN 3.2.1.18 GO:0004308 ... V9SU56 37258672
    4110 8g3r:E (2.3) BS03 MAN 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    4111 8g40:J (2.8) BS02 MAN 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    4112 8g4n:D (2.67) BS01 MAN ? GO:0004888 ... P22723 37730991
    4113 8g4o:D (3.06) BS01 MAN ? GO:0004888 ... P22723 37730991
    4114 8g4x:D (2.56) BS01 MAN ? GO:0004888 ... P22723 37730991
    4115 8g5g:D (2.94) BS01 MAN ? GO:0004888 ... P22723 37730991
    4116 8g6u:C (3.16) BS01 MAN N/A N/A N/A 37872202
    4117 8g6u:C (3.16) BS02 MAN N/A N/A N/A 37872202
    4118 8g6u:G (3.16) BS01 MAN N/A N/A N/A 37872202
    4119 8g6u:G (3.16) BS02 MAN N/A N/A N/A 37872202
    4120 8g6u:K (3.16) BS01 MAN N/A N/A N/A 37872202
    4121 8g6u:K (3.16) BS02 MAN N/A N/A N/A 37872202
    4122 8g6u:N (3.16) BS01 MAN N/A N/A N/A 37872202
    4123 8g6u:N (3.16) BS02 MAN N/A N/A N/A 37872202
    4124 8g6u:P (3.16) BS01 MAN N/A N/A N/A 37872202
    4125 8g6u:P (3.16) BS02 MAN N/A N/A N/A 37872202
    4126 8g6u:R (3.16) BS01 MAN N/A N/A N/A 37872202
    4127 8g6u:R (3.16) BS02 MAN N/A N/A N/A 37872202
    4128 8gc2:A (4.1) BS01 MAN ? GO:0000149 ... P42260 N/A
    4129 8gc2:B (4.1) BS01 MAN ? GO:0000149 ... P42260 N/A
    4130 8gc2:C (4.1) BS01 MAN ? GO:0000149 ... P42260 N/A
    4131 8gc2:D (4.1) BS01 MAN ? GO:0000149 ... P42260 N/A
    4132 8gc3:B (3.8) BS01 MAN ? GO:0000149 ... P42260 N/A
    4133 8gc3:C (3.8) BS01 MAN ? GO:0000149 ... P42260 N/A
    4134 8gc3:D (3.8) BS01 MAN ? GO:0000149 ... P42260 N/A
    4135 8gje:J (3.4) BS01 MAN N/A N/A N/A 37903160
    4136 8gje:K (3.4) BS01 MAN N/A N/A N/A 37903160
    4137 8gje:L (3.4) BS01 MAN N/A N/A N/A 37903160
    4138 8gl8:I (2.2) BS01 MAN ? N/A A1E5T9 N/A
    4139 8gl8:I (2.2) BS02 MAN ? N/A A1E5T9 N/A
    4140 8gl8:I (2.2) BS03 MAN ? N/A A1E5T9 N/A
    4141 8gl8:I (2.2) BS04 MAN ? N/A A1E5T9 N/A
    4142 8gpi:A (3.0) BS02 MAN N/A N/A N/A 37542068
    4143 8gpi:A (3.0) BS03 MAN N/A N/A N/A 37542068
    4144 8gpi:A (3.0) BS04 MAN N/A N/A N/A 37542068
    4145 8gpi:D (3.0) BS02 MAN N/A N/A N/A 37542068
    4146 8gpi:D (3.0) BS03 MAN N/A N/A N/A 37542068
    4147 8gpi:H (3.0) BS02 MAN N/A N/A N/A 37542068
    4148 8gpi:H (3.0) BS03 MAN N/A N/A N/A 37542068
    4149 8gpi:H (3.0) BS04 MAN N/A N/A N/A 37542068
    4150 8gpj:A (3.5) BS02 MAN N/A N/A N/A 37542068
    4151 8gpj:A (3.5) BS03 MAN N/A N/A N/A 37542068
    4152 8gpj:A (3.5) BS04 MAN N/A N/A N/A 37542068
    4153 8gpj:D (3.5) BS02 MAN N/A N/A N/A 37542068
    4154 8gpj:D (3.5) BS03 MAN N/A N/A N/A 37542068
    4155 8gpj:D (3.5) BS04 MAN N/A N/A N/A 37542068
    4156 8gpj:H (3.5) BS02 MAN N/A N/A N/A 37542068
    4157 8gpj:H (3.5) BS03 MAN N/A N/A N/A 37542068
    4158 8gpj:H (3.5) BS04 MAN N/A N/A N/A 37542068
    4159 8gyy:A (2.07) BS01 MAN 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    4160 8gyy:A (2.07) BS02 MAN 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    4161 8gyy:B (2.07) BS01 MAN 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    4162 8hc0:A (2.9) BS02 MAN ? N/A Q5T601 36716818
    4163 8hfs:D (2.98) BS01 MAN N/A GO:0009401 ... N/A 36840592
    4164 8hfs:F (2.98) BS01 MAN N/A GO:0009401 ... N/A 36840592
    4165 8hfs:Y (2.98) BS01 MAN N/A GO:0009401 ... N/A 36840592
    4166 8hfs:Z (2.98) BS01 MAN N/A GO:0009401 ... N/A 36840592
    4167 8i4d:A (1.06) BS01 MAN 4.2.2.- GO:0046872 ... A0A8J0PCK3 38382672
    4168 8i4d:A (1.06) BS02 MAN 4.2.2.- GO:0046872 ... A0A8J0PCK3 38382672
    4169 8ido:C (2.5) BS01 MAN N/A N/A N/A N/A
    4170 8ido:D (2.5) BS01 MAN N/A N/A N/A N/A
    4171 8idp:A (1.8) BS01 MAN ? GO:0004348 ... A0A0B8MZ29 37144255
    4172 8idp:A (1.8) BS02 MAN ? GO:0004348 ... A0A0B8MZ29 37144255
    4173 8idp:B (1.8) BS02 MAN ? GO:0004348 ... A0A0B8MZ29 37144255
    4174 8idp:C (1.8) BS01 MAN ? GO:0004348 ... A0A0B8MZ29 37144255
    4175 8idp:D (1.8) BS02 MAN ? GO:0004348 ... A0A0B8MZ29 37144255
    4176 8idq:A (1.7) BS01 MAN ? GO:0004348 ... A0A0B8MZ29 37144255
    4177 8idq:A (1.7) BS02 MAN ? GO:0004348 ... A0A0B8MZ29 37144255
    4178 8idq:B (1.7) BS01 MAN ? GO:0004348 ... A0A0B8MZ29 37144255
    4179 8idq:B (1.7) BS02 MAN ? GO:0004348 ... A0A0B8MZ29 37144255
    4180 8idq:C (1.7) BS01 MAN ? GO:0004348 ... A0A0B8MZ29 37144255
    4181 8idq:D (1.7) BS01 MAN ? GO:0004348 ... A0A0B8MZ29 37144255
    4182 8if2:B (2.78) BS01 MAN ? N/A P0DTC2 37169744
    4183 8ikx:A (1.5) BS01 MAN ? GO:0004553 ... Q9LYJ5 38359129
    4184 8iou:D (3.18) BS01 MAN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 37193706
    4185 8iov:A (3.29) BS01 MAN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 37193706
    4186 8ja5:C (2.79) BS01 MAN N/A N/A N/A N/A
    4187 8je9:A (1.0) BS01 MAN ? GO:0046872 ... K1QRB6 37793172
    4188 8je9:A (1.0) BS02 MAN ? GO:0046872 ... K1QRB6 37793172
    4189 8je9:B (1.0) BS01 MAN ? GO:0046872 ... K1QRB6 37793172
    4190 8je9:B (1.0) BS02 MAN ? GO:0046872 ... K1QRB6 37793172
    4191 8je9:D (1.0) BS01 MAN ? GO:0046872 ... K1QRB6 37793172
    4192 8jea:A (0.97) BS01 MAN ? GO:0046872 ... K1QRB6 37793172
    4193 8jea:A (0.97) BS02 MAN ? GO:0046872 ... K1QRB6 37793172
    4194 8jea:B (0.97) BS01 MAN ? GO:0046872 ... K1QRB6 37793172
    4195 8jea:B (0.97) BS02 MAN ? GO:0046872 ... K1QRB6 37793172
    4196 8jea:D (0.97) BS01 MAN ? GO:0046872 ... K1QRB6 37793172
    4197 8jeb:A (1.3) BS01 MAN ? GO:0046872 ... K1QRB6 37793172
    4198 8jeb:A (1.3) BS02 MAN ? GO:0046872 ... K1QRB6 37793172
    4199 8jeb:B (1.3) BS01 MAN ? GO:0046872 ... K1QRB6 37793172
    4200 8jeb:B (1.3) BS02 MAN ? GO:0046872 ... K1QRB6 37793172
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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