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BioLiP
Download all results in tab-seperated text for 4535 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3801 7w62:K (2.0) BS02 MAN ? N/A D7DTD6 N/A
    3802 7w62:L (2.0) BS01 MAN ? N/A D7DTD6 N/A
    3803 7w62:L (2.0) BS02 MAN ? N/A D7DTD6 N/A
    3804 7w62:M (2.0) BS01 MAN ? N/A D7DTD6 N/A
    3805 7w62:M (2.0) BS02 MAN ? N/A D7DTD6 N/A
    3806 7w62:N (2.0) BS01 MAN ? N/A D7DTD6 N/A
    3807 7w62:N (2.0) BS02 MAN ? N/A D7DTD6 N/A
    3808 7w6m:C (4.7) BS01 MAN ? GO:0016020 ... A0A1Y0DD46 35986008
    3809 7w73:C (6.4) BS02 MAN ? GO:0016020 ... A0A1Y0DD46 35986008
    3810 7wab:A (1.75) BS02 MAN ? GO:0006508 ... A0A3F3RXI7 34999257
    3811 7wab:A (1.75) BS03 MAN ? GO:0006508 ... A0A3F3RXI7 34999257
    3812 7wg3:I (2.19) BS01 MAN ? GO:0030368 ... A3KN55 36288706
    3813 7wuh:E (4.7) BS01 MAN ? GO:0005515 ... P0DTC2 35230146
    3814 7x2n:A (1.72) BS01 MAN N/A N/A N/A N/A
    3815 7x2s:A (1.92) BS01 MAN N/A N/A N/A N/A
    3816 7x2x:A (1.58) BS01 MAN N/A N/A N/A N/A
    3817 7x93:G (3.3) BS01 MAN ? GO:0016020 ... P0DTC2 37288342
    3818 7xno:D (2.54) BS01 MAN 2.7.1.69 GO:0005886 ... Q38YH6 35703550
    3819 7xno:E (2.54) BS01 MAN 2.7.1.69 GO:0009401 ... Q38YH5 35703550
    3820 7xno:H (2.54) BS01 MAN 2.7.1.69 GO:0005886 ... Q38YH6 35703550
    3821 7xno:I (2.54) BS01 MAN 2.7.1.69 GO:0009401 ... Q38YH5 35703550
    3822 7xno:Y (2.54) BS01 MAN 2.7.1.69 GO:0005886 ... Q38YH6 35703550
    3823 7xno:Z (2.54) BS01 MAN 2.7.1.69 GO:0009401 ... Q38YH5 35703550
    3824 7xog:B (3.5) BS01 MAN ? GO:0016020 ... P0DTC2 37993332
    3825 7xtg:D (2.2) BS01 MAN 2.7.1.69 GO:0005886 ... Q38YH6 35703550
    3826 7xtg:E (2.2) BS01 MAN 2.7.1.69 GO:0009401 ... Q38YH5 35703550
    3827 7xtg:H (2.2) BS01 MAN 2.7.1.69 GO:0005886 ... Q38YH6 35703550
    3828 7xtg:I (2.2) BS01 MAN 2.7.1.69 GO:0009401 ... Q38YH5 35703550
    3829 7xtg:Y (2.2) BS01 MAN 2.7.1.69 GO:0005886 ... Q38YH6 35703550
    3830 7xtg:Z (2.2) BS01 MAN 2.7.1.69 GO:0009401 ... Q38YH5 35703550
    3831 7xtj:A (2.5) BS01 MAN 3.2.1.37 GO:0004553 ... A0A023J5W7 36877249
    3832 7xtj:B (2.5) BS01 MAN 3.2.1.37 GO:0004553 ... A0A023J5W7 36877249
    3833 7xwa:D (3.36) BS01 MAN ? N/A P0DTC2 36198317
    3834 7yhg:A (-1.00) BS01 MAN 3.2.1.91 GO:0005576 ... P62694 37666405
    3835 7yhh:A (-1.00) BS01 MAN 3.2.1.91 GO:0005576 ... P62694 37666405
    3836 7yhi:A (-1.00) BS01 MAN 3.2.1.91 GO:0005576 ... P62694 37666405
    3837 7yl5:A (3.0) BS02 MAN ? N/A S6FKX6 36602978
    3838 7yl5:B (3.0) BS02 MAN ? N/A S6FKX6 36602978
    3839 7yl5:B (3.0) BS03 MAN ? N/A S6FKX6 36602978
    3840 7yl6:A (2.95) BS01 MAN ? N/A S6FKX6 36602978
    3841 7yl6:A (2.95) BS02 MAN ? N/A S6FKX6 36602978
    3842 7yl6:B (2.95) BS01 MAN ? N/A S6FKX6 36602978
    3843 7yl6:B (2.95) BS02 MAN ? N/A S6FKX6 36602978
    3844 7ymv:A (6.74) BS01 MAN ? GO:0005515 ... K0BRG7 38428397
    3845 7ymy:B (4.96) BS01 MAN ? GO:0005515 ... K0BRG7 38428397
    3846 7yo7:B (1.81) BS01 MAN 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    3847 7yqs:A (1.25) BS01 MAN ? GO:0016829 ... A0A8D5PZ14 38382672
    3848 7yqs:A (1.25) BS02 MAN ? GO:0016829 ... A0A8D5PZ14 38382672
    3849 7z0n:AAA (2.4) BS01 MAN 3.1.4.39 GO:0001953 ... Q64610 35440138
    3850 7z0n:AAA (2.4) BS02 MAN 3.1.4.39 GO:0001953 ... Q64610 35440138
    3851 7z14:A (3.15) BS01 MAN ? GO:0004888 ... P02710 35927270
    3852 7z14:A (3.15) BS02 MAN ? GO:0004888 ... P02710 35927270
    3853 7z14:D (3.15) BS01 MAN ? GO:0004888 ... P02710 35927270
    3854 7z3l:AAA (2.4) BS01 MAN 3.1.4.39 GO:0001953 ... Q64610 36640760
    3855 7z3l:AAA (2.4) BS02 MAN 3.1.4.39 GO:0001953 ... Q64610 36640760
    3856 7z3l:AAA (2.4) BS03 MAN 3.1.4.39 GO:0001953 ... Q64610 36640760
    3857 7z53:B (2.28) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 36150500
    3858 7z53:D (2.28) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 36150500
    3859 7z53:H (2.28) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 36150500
    3860 7z53:J (2.28) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 36150500
    3861 7z53:N (2.28) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 36150500
    3862 7z53:P (2.28) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 36150500
    3863 7z53:T (2.28) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 36150500
    3864 7z53:V (2.28) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 36150500
    3865 7za1:E (4.1) BS01 MAN ? N/A F1LW30 36240740
    3866 7za1:F (4.1) BS01 MAN ? N/A F1LW30 36240740
    3867 7za1:H (4.1) BS01 MAN ? N/A F1LW30 36240740
    3868 7za2:E (4.6) BS01 MAN ? N/A F1LW30 36240740
    3869 7za2:G (4.6) BS01 MAN ? N/A F1LW30 36240740
    3870 7za3:E (4.0) BS01 MAN ? N/A F1LW30 36240740
    3871 7za3:G (4.0) BS01 MAN ? N/A F1LW30 36240740
    3872 7zcx:AAA (3.1) BS01 MAN ? N/A Q4J6E5 38251732
    3873 7zlk:O (3.99) BS01 MAN N/A N/A N/A 36395347
    3874 7zlk:O (3.99) BS02 MAN N/A N/A N/A 36395347
    3875 7zlk:Q (3.99) BS01 MAN N/A N/A N/A 36395347
    3876 7zlk:R (3.99) BS01 MAN N/A N/A N/A 36395347
    3877 7zvb:A (2.35) BS01 MAN ? N/A A0A1L7NZU4 35915115
    3878 7zyf:A (2.81) BS01 MAN 3.4.11.3 GO:0006508 ... Q9UIQ6 35833347
    3879 8a47:C (2.338) BS01 MAN ? GO:0006508 ... A0A8B6IYA1 36528711
    3880 8a49:C (3.45) BS02 MAN 3.2.1.96 GO:0004553 ... Q99Y92 36528711
    3881 8a49:C (3.45) BS03 MAN 3.2.1.96 GO:0004553 ... Q99Y92 36528711
    3882 8aez:A (2.574) BS01 MAN ? GO:0019031 ... K7YEW5 36878926
    3883 8agb:F (3.0) BS01 MAN ? GO:0006487 ... Q02795 36435935
    3884 8aic:A (2.8) BS01 MAN ? GO:0019031 ... K7YEW5 36878926
    3885 8aic:A (2.8) BS02 MAN ? GO:0019031 ... K7YEW5 36878926
    3886 8aic:B (2.8) BS01 MAN ? GO:0019031 ... K7YEW5 36878926
    3887 8an2:AAA (3.2) BS01 MAN ? N/A Q4J6E5 38251732
    3888 8an2:AAA (3.2) BS02 MAN ? N/A Q4J6E5 38251732
    3889 8b3b:A (1.949) BS02 MAN ? GO:0042783 ... M4SYA9 36780870
    3890 8b3b:D (1.949) BS02 MAN ? GO:0042783 ... M4SYA9 36780870
    3891 8b3b:E (1.949) BS01 MAN ? GO:0042783 ... M4SYA9 36780870
    3892 8b3b:E (1.949) BS02 MAN ? GO:0042783 ... M4SYA9 36780870
    3893 8b3b:F (1.949) BS02 MAN ? GO:0042783 ... M4SYA9 36780870
    3894 8b3b:G (1.949) BS02 MAN ? GO:0042783 ... M4SYA9 36780870
    3895 8b3b:H (1.949) BS01 MAN ? GO:0042783 ... M4SYA9 36780870
    3896 8b57:A (2.42) BS02 MAN ? GO:0006508 ... A0A3F3RXI7 38059672
    3897 8b57:A (2.42) BS03 MAN ? GO:0006508 ... A0A3F3RXI7 38059672
    3898 8b57:A (2.42) BS04 MAN ? GO:0006508 ... A0A3F3RXI7 38059672
    3899 8b57:A (2.42) BS05 MAN ? GO:0006508 ... A0A3F3RXI7 38059672
    3900 8bbx:A (2.7) BS01 MAN ? GO:0006508 ... A0A3F3RXI7 38059672
    3901 8bbx:A (2.7) BS02 MAN ? GO:0006508 ... A0A3F3RXI7 38059672
    3902 8bbx:A (2.7) BS03 MAN ? GO:0006508 ... A0A3F3RXI7 38059672
    3903 8bbx:B (2.7) BS01 MAN ? GO:0006508 ... A0A3F3RXI7 38059672
    3904 8bbx:B (2.7) BS02 MAN ? GO:0006508 ... A0A3F3RXI7 38059672
    3905 8bec:A (1.7) BS02 MAN N/A N/A N/A N/A
    3906 8bec:B (1.7) BS01 MAN ? N/A P0DTC2 N/A
    3907 8bec:C (1.7) BS01 MAN N/A N/A N/A N/A
    3908 8bec:D (1.7) BS01 MAN ? N/A P0DTC2 N/A
    3909 8beq:A (2.07) BS01 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3910 8beq:B (2.07) BS01 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3911 8beq:B (2.07) BS02 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3912 8beq:B (2.07) BS03 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3913 8beq:B (2.07) BS04 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3914 8beq:B (2.07) BS05 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3915 8beq:B (2.07) BS06 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3916 8bes:A (1.86) BS01 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3917 8bes:A (1.86) BS02 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3918 8bes:A (1.86) BS04 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3919 8bes:B (1.86) BS01 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3920 8bes:B (1.86) BS02 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3921 8bes:C (1.86) BS01 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3922 8bes:C (1.86) BS02 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3923 8bes:C (1.86) BS03 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3924 8bes:C (1.86) BS04 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3925 8bes:D (1.86) BS01 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3926 8bes:D (1.86) BS02 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3927 8bet:A (2.38) BS03 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3928 8bet:A (2.38) BS04 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3929 8bet:A (2.38) BS05 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3930 8bet:B (2.38) BS03 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3931 8bet:B (2.38) BS04 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3932 8bet:B (2.38) BS05 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3933 8bet:C (2.38) BS03 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3934 8bet:C (2.38) BS04 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3935 8bet:C (2.38) BS05 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3936 8bet:D (2.38) BS03 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3937 8bet:D (2.38) BS04 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3938 8beu:A (2.27) BS03 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3939 8beu:A (2.27) BS04 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3940 8beu:A (2.27) BS05 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3941 8beu:B (2.27) BS03 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3942 8beu:B (2.27) BS04 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3943 8beu:C (2.27) BS03 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3944 8beu:C (2.27) BS04 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3945 8beu:D (2.27) BS03 MAN 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    3946 8bhh:B (1.69) BS01 MAN 3.1.1.-
    3.1.1.73
    GO:0030600 ... A0A2H3G048 36961270
    3947 8bhh:B (1.69) BS02 MAN 3.1.1.-
    3.1.1.73
    GO:0030600 ... A0A2H3G048 36961270
    3948 8bxy:A (1.45) BS01 MAN ? GO:0007155 ... P08191 36944399
    3949 8bxy:B (1.45) BS01 MAN ? GO:0007155 ... P08191 36944399
    3950 8by3:A (3.186) BS01 MAN ? GO:0007155 ... P08191 36944399
    3951 8by3:B (3.186) BS01 MAN ? GO:0007155 ... P08191 36944399
    3952 8by3:C (3.186) BS01 MAN ? GO:0007155 ... P08191 36944399
    3953 8by3:D (3.186) BS01 MAN ? GO:0007155 ... P08191 36944399
    3954 8c48:A (1.4) BS01 MAN 3.2.1.- GO:0005576 ... G2Q1N4 38678481
    3955 8c48:A (1.4) BS02 MAN 3.2.1.- GO:0005576 ... G2Q1N4 38678481
    3956 8ca9:A (2.29) BS01 MAN ? N/A Q24995 37729416
    3957 8ca9:B (2.29) BS01 MAN ? N/A Q24995 37729416
    3958 8ca9:C (2.29) BS01 MAN ? N/A Q24995 37729416
    3959 8ca9:D (2.29) BS01 MAN ? GO:0045735 ... A0A6J1WVA9 37729416
    3960 8ca9:E (2.29) BS01 MAN ? GO:0045735 ... A0A6J1WVA9 37729416
    3961 8ca9:F (2.29) BS01 MAN ? GO:0045735 ... A0A6J1WVA9 37729416
    3962 8cad:A (2.85) BS01 MAN ? N/A A0A6J1WN20 37729416
    3963 8cad:B (2.85) BS01 MAN ? N/A A0A6J1WN20 37729416
    3964 8cad:C (2.85) BS01 MAN ? N/A A0A6J1WN20 37729416
    3965 8cad:D (2.85) BS01 MAN ? N/A A0A6J1WN20 37729416
    3966 8cad:E (2.85) BS01 MAN ? N/A A0A6J1WN20 37729416
    3967 8cad:F (2.85) BS01 MAN ? N/A A0A6J1WN20 37729416
    3968 8cbc:A (1.4) BS01 MAN 3.2.1.- GO:0005576 ... G2Q1N4 38678481
    3969 8cbc:A (1.4) BS02 MAN 3.2.1.- GO:0005576 ... G2Q1N4 38678481
    3970 8ckg:A (1.714) BS02 MAN ? N/A Q13591 38548715
    3971 8ckg:A (1.714) BS03 MAN ? N/A Q13591 38548715
    3972 8ckg:B (1.714) BS02 MAN ? N/A Q13591 38548715
    3973 8ckg:B (1.714) BS03 MAN ? N/A Q13591 38548715
    3974 8ckk:A (1.56) BS01 MAN ? N/A Q13591 38548715
    3975 8ckk:A (1.56) BS02 MAN ? N/A Q13591 38548715
    3976 8ckk:B (1.56) BS01 MAN ? N/A Q13591 38548715
    3977 8ckk:B (1.56) BS02 MAN ? N/A Q13591 38548715
    3978 8ckl:A (2.56) BS03 MAN ? N/A Q13591 38548715
    3979 8ckl:B (2.56) BS02 MAN ? N/A Q13591 38548715
    3980 8ckl:B (2.56) BS03 MAN ? N/A Q13591 38548715
    3981 8czz:C (3.14) BS01 MAN N/A N/A N/A 37872202
    3982 8czz:G (3.14) BS01 MAN N/A N/A N/A 37872202
    3983 8czz:G (3.14) BS02 MAN N/A N/A N/A 37872202
    3984 8czz:K (3.14) BS02 MAN N/A N/A N/A 37872202
    3985 8czz:K (3.14) BS03 MAN N/A N/A N/A 37872202
    3986 8d0y:D (4.7) BS02 MAN N/A N/A N/A N/A
    3987 8d0y:G (4.7) BS01 MAN ? GO:0019031 ... Q2N0S6 N/A
    3988 8d3a:H (2.9) BS02 MAN N/A N/A N/A 36225920
    3989 8d3a:H (2.9) BS03 MAN N/A N/A N/A 36225920
    3990 8d3t:A (2.37) BS01 MAN 2.4.1.- N/A A0A2K2AMS7 36849618
    3991 8d3t:A (2.37) BS02 MAN 2.4.1.- N/A A0A2K2AMS7 36849618
    3992 8d3t:B (2.37) BS01 MAN 2.4.1.- N/A A0A2K2AMS7 36849618
    3993 8d3t:B (2.37) BS02 MAN 2.4.1.- N/A A0A2K2AMS7 36849618
    3994 8d3t:C (2.37) BS01 MAN 2.4.1.- N/A A0A2K2AMS7 36849618
    3995 8d3t:C (2.37) BS02 MAN 2.4.1.- N/A A0A2K2AMS7 36849618
    3996 8d3z:A (2.56) BS01 MAN 2.4.1.- N/A A0A2K2AMS7 36849618
    3997 8d3z:B (2.56) BS01 MAN 2.4.1.- N/A A0A2K2AMS7 36849618
    3998 8d4r:D (3.81) BS02 MAN N/A N/A N/A N/A
    3999 8d4r:L (3.81) BS01 MAN N/A N/A N/A N/A
    4000 8d50:H (4.32) BS01 MAN N/A N/A N/A N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417