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BioLiP
Download all results in tab-seperated text for 4535 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3601 7q3n:U (7.4) BS04 MAN ? GO:0000922 ... P07911 35273390
    3602 7q3n:U (7.4) BS05 MAN ? GO:0000922 ... P07911 35273390
    3603 7qko:A (2.9) BS01 MAN ? GO:0004888 ... P02710 35139364
    3604 7qko:D (2.9) BS01 MAN ? GO:0004888 ... P02710 35139364
    3605 7ql5:A (2.5) BS01 MAN ? GO:0004888 ... P02710 35139364
    3606 7ql6:A (3.23) BS01 MAN ? GO:0004888 ... P02710 35139364
    3607 7qne:C (2.7) BS01 MAN ? GO:0004888 ... P18507 35355020
    3608 7qne:C (2.7) BS02 MAN ? GO:0004888 ... P18507 35355020
    3609 7qpd:C (3.73) BS01 MAN ? GO:0000122 ... P27797 35948544
    3610 7qqb:B (2.6) BS01 MAN ? GO:0019049 ... A0A0B4U5I0
    A0A6M3W7M6
    37315110
    3611 7qqb:B (2.6) BS02 MAN ? GO:0019049 ... A0A0B4U5I0
    A0A6M3W7M6
    37315110
    3612 7qu1:B (1.91) BS01 MAN N/A N/A N/A 35315691
    3613 7quo:A (3.0) BS01 MAN ? GO:0007155 ... P08191 N/A
    3614 7quo:B (3.0) BS01 MAN ? GO:0007155 ... P08191 N/A
    3615 7quo:C (3.0) BS01 MAN ? GO:0007155 ... P08191 N/A
    3616 7quo:D (3.0) BS01 MAN ? GO:0007155 ... P08191 N/A
    3617 7qzr:B (2.18) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 36150500
    3618 7qzr:D (2.18) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 36150500
    3619 7r84:A (1.336) BS02 MAN ? N/A Q3UHD1 34758294
    3620 7r84:A (1.336) BS03 MAN ? N/A Q3UHD1 34758294
    3621 7r84:B (1.336) BS03 MAN ? N/A Q3UHD1 34758294
    3622 7r84:C (1.336) BS02 MAN ? N/A Q3UHD1 34758294
    3623 7r84:D (1.336) BS03 MAN ? N/A Q3UHD1 34758294
    3624 7r85:A (1.45) BS02 MAN ? N/A Q3UHD1 34758294
    3625 7r85:A (1.45) BS03 MAN ? N/A Q3UHD1 34758294
    3626 7r86:A (1.65) BS03 MAN ? N/A Q99PI8 34758294
    3627 7r86:B (1.65) BS03 MAN ? N/A Q99PI8 34758294
    3628 7r86:C (1.65) BS02 MAN ? N/A Q3UHD1 34758294
    3629 7r86:C (1.65) BS03 MAN ? N/A Q3UHD1 34758294
    3630 7r86:D (1.65) BS02 MAN ? N/A Q3UHD1 34758294
    3631 7r86:D (1.65) BS03 MAN ? N/A Q3UHD1 34758294
    3632 7r8o:H (3.5) BS01 MAN N/A N/A N/A 34331873
    3633 7rai:A (3.24) BS01 MAN ? GO:0019031 ... Q2N0S6 34753944
    3634 7rai:C (3.24) BS01 MAN ? GO:0019031 ... Q2N0S6 34753944
    3635 7rai:E (3.24) BS01 MAN ? GO:0019031 ... Q2N0S6 34753944
    3636 7rgf:A (2.4) BS01 MAN ? GO:0005509 ... Q91XX0 35253643
    3637 7rgf:B (2.4) BS01 MAN ? GO:0005509 ... Q91XX0 35253643
    3638 7ria:A (1.8) BS01 MAN ? GO:0005515 ... P84801 35537058
    3639 7ria:A (1.8) BS02 MAN ? GO:0005515 ... P84801 35537058
    3640 7ria:A (1.8) BS03 MAN ? GO:0005515 ... P84801 35537058
    3641 7ria:B (1.8) BS01 MAN ? GO:0005515 ... P84801 35537058
    3642 7ria:B (1.8) BS02 MAN ? GO:0005515 ... P84801 35537058
    3643 7ria:B (1.8) BS03 MAN ? GO:0005515 ... P84801 35537058
    3644 7ria:B (1.8) BS04 MAN ? GO:0005515 ... P84801 35537058
    3645 7rib:A (2.1) BS01 MAN ? GO:0005515 ... P84801 35537058
    3646 7rib:A (2.1) BS02 MAN ? GO:0005515 ... P84801 35537058
    3647 7rib:B (2.1) BS01 MAN ? GO:0005515 ... P84801 35537058
    3648 7rib:B (2.1) BS02 MAN ? GO:0005515 ... P84801 35537058
    3649 7rib:B (2.1) BS03 MAN ? GO:0005515 ... P84801 35537058
    3650 7rib:C (2.1) BS01 MAN ? GO:0005515 ... P84801 35537058
    3651 7rib:C (2.1) BS02 MAN ? GO:0005515 ... P84801 35537058
    3652 7rkg:A (2.2) BS01 MAN ? GO:0005515 ... P84801 35537058
    3653 7rkg:B (2.2) BS01 MAN ? GO:0005515 ... P84801 35537058
    3654 7rki:A (2.09) BS01 MAN ? GO:0005515 ... P84801 35537058
    3655 7rki:A (2.09) BS02 MAN ? GO:0005515 ... P84801 35537058
    3656 7rki:B (2.09) BS01 MAN ? GO:0005515 ... P84801 35537058
    3657 7rsn:J (3.49) BS01 MAN N/A N/A N/A 34669426
    3658 7rsn:K (3.49) BS01 MAN N/A N/A N/A 34669426
    3659 7rsn:L (3.49) BS01 MAN N/A N/A N/A 34669426
    3660 7rst:A (1.69) BS03 MAN 1.11.1.10 GO:0004601 ... P04963 N/A
    3661 7rst:A (1.69) BS04 MAN 1.11.1.10 GO:0004601 ... P04963 N/A
    3662 7rst:A (1.69) BS05 MAN 1.11.1.10 GO:0004601 ... P04963 N/A
    3663 7rst:A (1.69) BS06 MAN 1.11.1.10 GO:0004601 ... P04963 N/A
    3664 7rst:A (1.69) BS07 MAN 1.11.1.10 GO:0004601 ... P04963 N/A
    3665 7rst:A (1.69) BS08 MAN 1.11.1.10 GO:0004601 ... P04963 N/A
    3666 7rst:A (1.69) BS09 MAN 1.11.1.10 GO:0004601 ... P04963 N/A
    3667 7shy:A (3.0) BS01 MAN ? N/A P01854 34862384
    3668 7shy:B (3.0) BS01 MAN ? N/A P01854 34862384
    3669 7shz:B (3.0) BS01 MAN ? N/A P01854 34862384
    3670 7shz:B (3.0) BS02 MAN ? N/A P01854 34862384
    3671 7si0:B (3.0) BS01 MAN ? N/A P01854 34862384
    3672 7si0:H (3.0) BS01 MAN ? N/A P01854 34862384
    3673 7smq:D (2.74) BS01 MAN ? GO:0004888 ... P02710 35301478
    3674 7smr:A (2.77) BS01 MAN ? GO:0004888 ... P02710 35301478
    3675 7smr:D (2.77) BS01 MAN ? GO:0004888 ... P02710 35301478
    3676 7sms:A (3.18) BS01 MAN ? GO:0004888 ... P02710 35301478
    3677 7sn0:A (3.08) BS01 MAN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 34855508
    3678 7sn0:C (3.08) BS01 MAN ? N/A P0DTC2 34855508
    3679 7syy:A (2.74) BS01 MAN ? GO:0004308 ... O89343 35617431
    3680 7t0w:D (3.0) BS01 MAN ? GO:0004888 ... P14867 35803245
    3681 7t0w:E (3.0) BS01 MAN ? GO:0004888 ... P18507 35803245
    3682 7t0w:E (3.0) BS02 MAN ? GO:0004888 ... P18507 35803245
    3683 7t0z:D (3.0) BS01 MAN ? GO:0004888 ... P14867 35803245
    3684 7t0z:E (3.0) BS01 MAN ? GO:0004888 ... P18507 35803245
    3685 7t1x:L (2.6) BS02 MAN N/A N/A N/A N/A
    3686 7t4g:A (3.7) BS01 MAN ? GO:0019031 ... Q5QG95 36068229
    3687 7t4g:C (3.7) BS01 MAN ? GO:0019031 ... Q5QG95 36068229
    3688 7t4g:E (3.7) BS01 MAN ? GO:0019031 ... Q5QG95 36068229
    3689 7t73:L (4.0) BS01 MAN N/A N/A N/A 36179689
    3690 7t74:H (3.35) BS01 MAN N/A N/A N/A 36179689
    3691 7t74:H (3.35) BS02 MAN N/A N/A N/A 36179689
    3692 7t74:L (3.35) BS02 MAN N/A N/A N/A 36179689
    3693 7t76:H (4.43) BS01 MAN N/A N/A N/A 36179689
    3694 7t77:H (4.75) BS01 MAN N/A N/A N/A 36179689
    3695 7t77:H (4.75) BS02 MAN N/A N/A N/A 36179689
    3696 7t77:H (4.75) BS03 MAN N/A N/A N/A 36179689
    3697 7t9a:H (3.54) BS02 MAN N/A N/A N/A N/A
    3698 7t9a:L (3.54) BS01 MAN N/A N/A N/A N/A
    3699 7t9b:L (3.72) BS01 MAN N/A N/A N/A N/A
    3700 7t9b:L (3.72) BS02 MAN N/A N/A N/A N/A
    3701 7tcn:C (4.1) BS01 MAN N/A N/A N/A N/A
    3702 7tcn:G (4.1) BS01 MAN N/A N/A N/A N/A
    3703 7tei:B (3.4) BS01 MAN ? GO:0016020 ... P0DTC2 35447081
    3704 7tn9:M (3.1) BS01 MAN N/A N/A N/A 36708708
    3705 7tn9:N (3.1) BS01 MAN N/A N/A N/A 36708708
    3706 7tn9:O (3.1) BS01 MAN N/A N/A N/A 36708708
    3707 7tn9:P (3.1) BS01 MAN N/A N/A N/A 36708708
    3708 7tn9:Q (3.1) BS01 MAN N/A N/A N/A 36708708
    3709 7txd:A (3.87) BS01 MAN ? GO:0019031 ... Q2N0S6 37605043
    3710 7txd:E (3.87) BS01 MAN ? GO:0019031 ... Q2N0S6 37605043
    3711 7txd:E (3.87) BS02 MAN ? GO:0019031 ... Q2N0S6 37605043
    3712 7tyv:A (2.8) BS01 MAN ? GO:0019031 ... P08669 35613585
    3713 7tyv:B (2.8) BS01 MAN ? GO:0019031 ... P08669 35613585
    3714 7tyv:C (2.8) BS01 MAN ? GO:0019031 ... P08669 35613585
    3715 7u4e:A (1.54) BS02 MAN 3.2.1.18 GO:0004308 ... H9XI12 36307418
    3716 7u4e:A (1.54) BS03 MAN 3.2.1.18 GO:0004308 ... H9XI12 36307418
    3717 7u4e:B (1.54) BS02 MAN 3.2.1.18 GO:0004308 ... H9XI12 36307418
    3718 7u4e:B (1.54) BS03 MAN 3.2.1.18 GO:0004308 ... H9XI12 36307418
    3719 7u4e:C (1.54) BS02 MAN 3.2.1.18 GO:0004308 ... H9XI12 36307418
    3720 7u4e:C (1.54) BS03 MAN 3.2.1.18 GO:0004308 ... H9XI12 36307418
    3721 7u4e:D (1.54) BS02 MAN 3.2.1.18 GO:0004308 ... H9XI12 36307418
    3722 7u4e:D (1.54) BS03 MAN 3.2.1.18 GO:0004308 ... H9XI12 36307418
    3723 7ucf:E (4.0) BS01 MAN N/A N/A N/A 35960796
    3724 7ucf:H (4.0) BS01 MAN N/A N/A N/A 35960796
    3725 7ucf:L (4.0) BS01 MAN N/A N/A N/A 35960796
    3726 7ucg:K (3.5) BS01 MAN N/A N/A N/A 35960796
    3727 7ucg:L (3.5) BS01 MAN N/A N/A N/A 35960796
    3728 7ucg:R (3.5) BS01 MAN N/A N/A N/A 35960796
    3729 7ufu:A (2.7) BS02 MAN ? GO:0003824 ... Q8G4Q1 N/A
    3730 7ufu:B (2.7) BS02 MAN ? GO:0003824 ... Q8G4Q1 N/A
    3731 7ufu:C (2.7) BS02 MAN ? GO:0003824 ... Q8G4Q1 N/A
    3732 7ufu:D (2.7) BS02 MAN ? GO:0003824 ... Q8G4Q1 N/A
    3733 7ugo:N (4.1) BS01 MAN N/A N/A N/A 36253376
    3734 7ugo:P (4.1) BS01 MAN N/A N/A N/A 36253376
    3735 7ugo:Q (4.1) BS01 MAN N/A N/A N/A 36253376
    3736 7ugo:R (4.1) BS01 MAN N/A N/A N/A 36253376
    3737 7ugp:M (4.2) BS01 MAN N/A N/A N/A 36253376
    3738 7ugp:N (4.2) BS01 MAN N/A N/A N/A 36253376
    3739 7ugp:P (4.2) BS01 MAN N/A N/A N/A 36253376
    3740 7ugp:Q (4.2) BS01 MAN N/A N/A N/A 36253376
    3741 7ugp:R (4.2) BS01 MAN N/A N/A N/A 36253376
    3742 7ugp:R (4.2) BS02 MAN N/A N/A N/A 36253376
    3743 7ugq:P (3.4) BS01 MAN N/A N/A N/A 36253376
    3744 7ugq:P (3.4) BS02 MAN N/A N/A N/A 36253376
    3745 7ugq:Q (3.4) BS01 MAN N/A N/A N/A 36253376
    3746 7ugq:R (3.4) BS01 MAN N/A N/A N/A 36253376
    3747 7uny:B (4.13) BS01 MAN N/A N/A N/A 36396942
    3748 7uot:A (2.77) BS01 MAN ? GO:0019031 ... P08669 36288283
    3749 7uot:B (2.77) BS01 MAN ? GO:0019031 ... P08669 36288283
    3750 7uov:A (2.75) BS01 MAN ? GO:0019031 ... P08669 36288283
    3751 7uov:B (2.75) BS01 MAN ? GO:0019031 ... P08669 36288283
    3752 7uov:C (2.75) BS01 MAN ? GO:0019031 ... P08669 36288283
    3753 7uov:F (2.75) BS01 MAN N/A N/A N/A 36288283
    3754 7ur6:D (3.46) BS02 MAN N/A N/A N/A N/A
    3755 7ur6:D (3.46) BS03 MAN N/A N/A N/A N/A
    3756 7ur6:H (3.46) BS01 MAN N/A N/A N/A N/A
    3757 7ur6:H (3.46) BS02 MAN N/A N/A N/A N/A
    3758 7ur6:J (3.46) BS02 MAN N/A N/A N/A N/A
    3759 7ur6:J (3.46) BS03 MAN N/A N/A N/A N/A
    3760 7uyi:E (3.0) BS01 MAN N/A GO:0019031 ... N/A 37185989
    3761 7vlx:A (3.12) BS01 MAN ? GO:0005886 ... S5LAD9 34851716
    3762 7vlx:B (3.12) BS01 MAN ? GO:0009401 ... A0A1E8EBU8 34851716
    3763 7vlx:C (3.12) BS01 MAN ? GO:0005886 ... S5LAD9 34851716
    3764 7vlx:D (3.12) BS01 MAN ? GO:0009401 ... A0A1E8EBU8 34851716
    3765 7vlx:Y (3.12) BS01 MAN ? GO:0005886 ... S5LAD9 34851716
    3766 7vlx:Z (3.12) BS01 MAN ? GO:0009401 ... A0A1E8EBU8 34851716
    3767 7vly:C (2.45) BS01 MAN ? GO:0005886 ... S5LAD9 34851716
    3768 7vly:D (2.45) BS01 MAN ? GO:0005886 ... Q8YAM0 34851716
    3769 7vly:F (2.45) BS01 MAN ? GO:0005886 ... S5LAD9 34851716
    3770 7vly:G (2.45) BS01 MAN ? GO:0005886 ... Q8YAM0 34851716
    3771 7vly:Y (2.45) BS01 MAN ? GO:0005886 ... S5LAD9 34851716
    3772 7vly:Z (2.45) BS01 MAN ? GO:0005886 ... Q8YAM0 34851716
    3773 7w3v:C (3.11) BS01 MAN ? N/A A0A2I8B6R1 36131021
    3774 7w3x:C (3.21) BS01 MAN ? N/A A0A2I8B6R1 36131021
    3775 7w62:A (2.0) BS01 MAN ? N/A D7DTD6 N/A
    3776 7w62:A (2.0) BS02 MAN ? N/A D7DTD6 N/A
    3777 7w62:A (2.0) BS03 MAN ? N/A D7DTD6 N/A
    3778 7w62:B (2.0) BS01 MAN ? N/A D7DTD6 N/A
    3779 7w62:B (2.0) BS02 MAN ? N/A D7DTD6 N/A
    3780 7w62:B (2.0) BS03 MAN ? N/A D7DTD6 N/A
    3781 7w62:C (2.0) BS01 MAN ? N/A D7DTD6 N/A
    3782 7w62:C (2.0) BS02 MAN ? N/A D7DTD6 N/A
    3783 7w62:C (2.0) BS03 MAN ? N/A D7DTD6 N/A
    3784 7w62:D (2.0) BS01 MAN ? N/A D7DTD6 N/A
    3785 7w62:D (2.0) BS02 MAN ? N/A D7DTD6 N/A
    3786 7w62:D (2.0) BS03 MAN ? N/A D7DTD6 N/A
    3787 7w62:E (2.0) BS01 MAN ? N/A D7DTD6 N/A
    3788 7w62:E (2.0) BS02 MAN ? N/A D7DTD6 N/A
    3789 7w62:F (2.0) BS01 MAN ? N/A D7DTD6 N/A
    3790 7w62:F (2.0) BS02 MAN ? N/A D7DTD6 N/A
    3791 7w62:G (2.0) BS01 MAN ? N/A D7DTD6 N/A
    3792 7w62:G (2.0) BS02 MAN ? N/A D7DTD6 N/A
    3793 7w62:H (2.0) BS01 MAN ? N/A D7DTD6 N/A
    3794 7w62:H (2.0) BS02 MAN ? N/A D7DTD6 N/A
    3795 7w62:I (2.0) BS01 MAN ? N/A D7DTD6 N/A
    3796 7w62:I (2.0) BS02 MAN ? N/A D7DTD6 N/A
    3797 7w62:J (2.0) BS01 MAN ? N/A D7DTD6 N/A
    3798 7w62:J (2.0) BS02 MAN ? N/A D7DTD6 N/A
    3799 7w62:J (2.0) BS03 MAN ? N/A D7DTD6 N/A
    3800 7w62:K (2.0) BS01 MAN ? N/A D7DTD6 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417