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BioLiP
Download all results in tab-seperated text for 4535 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3401 7lag:G (2.85) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 33811992
    3402 7lag:I (2.85) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 33811992
    3403 7lal:B (2.75) BS03 MAN 1.11.2.2 GO:0004601 ... P05164 33811992
    3404 7lal:E (2.75) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 33811992
    3405 7lan:B (2.28) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 33811992
    3406 7lan:E (2.28) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 33811992
    3407 7lan:G (2.28) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 33811992
    3408 7lan:I (2.28) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 33811992
    3409 7lbe:C (2.9) BS01 MAN ? GO:0019031 ... Q8BCU3 33626330
    3410 7lbe:C (2.9) BS02 MAN ? GO:0019031 ... Q8BCU3 33626330
    3411 7lbf:C (2.8) BS01 MAN ? GO:0019031 ... Q8BCU3 33626330
    3412 7lbg:C (2.6) BS01 MAN ? GO:0019031 ... Q8BCU3 33626330
    3413 7lg6:L (3.28) BS01 MAN N/A N/A N/A 34731616
    3414 7lg6:Q (3.28) BS01 MAN N/A N/A N/A 34731616
    3415 7lg6:R (3.28) BS01 MAN N/A N/A N/A 34731616
    3416 7ll1:F (3.73) BS01 MAN N/A N/A N/A 34731616
    3417 7ll1:F (3.73) BS02 MAN N/A N/A N/A 34731616
    3418 7ll1:K (3.73) BS02 MAN N/A N/A N/A 34731616
    3419 7ll1:K (3.73) BS03 MAN N/A N/A N/A 34731616
    3420 7ll1:L (3.73) BS01 MAN N/A N/A N/A 34731616
    3421 7ll1:L (3.73) BS02 MAN N/A N/A N/A 34731616
    3422 7ll2:H (3.73) BS01 MAN N/A N/A N/A 34731616
    3423 7ll2:I (3.73) BS01 MAN N/A N/A N/A 34731616
    3424 7ll2:J (3.73) BS01 MAN N/A N/A N/A 34731616
    3425 7ll2:J (3.73) BS02 MAN N/A N/A N/A 34731616
    3426 7ll2:K (3.73) BS01 MAN N/A N/A N/A 34731616
    3427 7ll2:L (3.73) BS01 MAN N/A N/A N/A 34731616
    3428 7ll2:M (3.73) BS01 MAN N/A N/A N/A 34731616
    3429 7llk:C (4.8) BS01 MAN N/A N/A N/A 34731616
    3430 7llk:G (4.8) BS01 MAN N/A N/A N/A 34731616
    3431 7llk:K (4.8) BS01 MAN N/A N/A N/A 34731616
    3432 7lo6:C (3.9) BS01 MAN ? GO:0019031 ... Q2N0S6 33782388
    3433 7lok:C (3.9) BS02 MAN ? GO:0019031 ... Q2N0S6 33782388
    3434 7lok:E (3.9) BS02 MAN ? GO:0019031 ... Q2N0S6 33782388
    3435 7lu9:e (5.6) BS01 MAN ? GO:0019031 ... M4M097 34019795
    3436 7lu9:f (5.6) BS01 MAN ? GO:0019031 ... M4M097 34019795
    3437 7lu9:i (5.6) BS01 MAN N/A N/A N/A 34019795
    3438 7lu9:l (5.6) BS01 MAN N/A N/A N/A 34019795
    3439 7lu9:p (5.6) BS01 MAN N/A N/A N/A 34019795
    3440 7lu9:q (5.6) BS01 MAN N/A N/A N/A 34019795
    3441 7lua:h (4.7) BS01 MAN N/A N/A N/A 34019795
    3442 7lx2:H (3.12) BS01 MAN N/A N/A N/A 37443366
    3443 7lx2:L (3.12) BS01 MAN N/A N/A N/A 37443366
    3444 7lx2:M (3.12) BS01 MAN N/A N/A N/A 37443366
    3445 7lx2:N (3.12) BS01 MAN N/A N/A N/A 37443366
    3446 7lx2:O (3.12) BS01 MAN N/A N/A N/A 37443366
    3447 7lx2:P (3.12) BS01 MAN N/A N/A N/A 37443366
    3448 7lx3:H (3.45) BS01 MAN N/A N/A N/A 37443366
    3449 7lx3:L (3.45) BS01 MAN N/A N/A N/A 37443366
    3450 7lx3:M (3.45) BS01 MAN N/A N/A N/A 37443366
    3451 7lx3:N (3.45) BS01 MAN N/A N/A N/A 37443366
    3452 7lx3:O (3.45) BS01 MAN N/A N/A N/A 37443366
    3453 7lx3:P (3.45) BS01 MAN N/A N/A N/A 37443366
    3454 7lxm:H (3.41) BS01 MAN N/A N/A N/A 37443366
    3455 7lxm:H (3.41) BS02 MAN N/A N/A N/A 37443366
    3456 7lxm:L (3.41) BS01 MAN N/A N/A N/A 37443366
    3457 7lxm:M (3.41) BS01 MAN N/A N/A N/A 37443366
    3458 7lxm:N (3.41) BS01 MAN N/A N/A N/A 37443366
    3459 7lxm:N (3.41) BS02 MAN N/A N/A N/A 37443366
    3460 7lxm:O (3.41) BS01 MAN N/A N/A N/A 37443366
    3461 7lxm:P (3.41) BS01 MAN N/A N/A N/A 37443366
    3462 7lxm:P (3.41) BS02 MAN N/A N/A N/A 37443366
    3463 7lxn:H (3.85) BS01 MAN N/A N/A N/A 37443366
    3464 7lxn:H (3.85) BS02 MAN N/A N/A N/A 37443366
    3465 7lxn:I (3.85) BS01 MAN N/A N/A N/A 37443366
    3466 7lxn:I (3.85) BS02 MAN N/A N/A N/A 37443366
    3467 7lxn:J (3.85) BS01 MAN N/A N/A N/A 37443366
    3468 7lxn:J (3.85) BS02 MAN N/A N/A N/A 37443366
    3469 7lxn:L (3.85) BS01 MAN N/A N/A N/A 37443366
    3470 7lxn:M (3.85) BS01 MAN N/A N/A N/A 37443366
    3471 7lxn:N (3.85) BS01 MAN N/A N/A N/A 37443366
    3472 7ly9:C (3.91) BS01 MAN N/A N/A N/A 34753907
    3473 7ly9:I (3.91) BS01 MAN N/A N/A N/A 34753907
    3474 7lyu:B (3.0) BS01 MAN 3.4.21.- GO:0001764 ... Q60841 35659645
    3475 7m5e:A (2.5) BS01 MAN ? GO:0005515 ... K9N5Q8 33981021
    3476 7m5e:C (2.5) BS01 MAN ? GO:0005515 ... K9N5Q8 33981021
    3477 7m5e:E (2.5) BS01 MAN ? GO:0005515 ... K9N5Q8 33981021
    3478 7mfh:A (2.3) BS01 MAN 3.1.4.39 GO:0003676 ... Q9R1E6 34267882
    3479 7mg5:A (2.1) BS03 MAN ? GO:0030246 ... P02866 34096291
    3480 7mg5:B (2.1) BS03 MAN ? GO:0030246 ... P02866 34096291
    3481 7mg6:A (1.7) BS03 MAN ? GO:0030246 ... P02866 34096291
    3482 7mg6:B (1.7) BS03 MAN ? GO:0030246 ... P02866 34096291
    3483 7mg7:A (1.75) BS03 MAN ? GO:0030246 ... P02866 34096291
    3484 7mg7:B (1.75) BS03 MAN ? GO:0030246 ... P02866 34096291
    3485 7mg8:A (3.0) BS03 MAN ? GO:0030246 ... P02866 34096291
    3486 7mg8:B (3.0) BS03 MAN ? GO:0030246 ... P02866 34096291
    3487 7mg9:A (2.55) BS03 MAN ? GO:0030246 ... P02866 34096291
    3488 7mg9:B (2.55) BS03 MAN ? GO:0030246 ... P02866 34096291
    3489 7mga:A (2.0) BS03 MAN ? GO:0030246 ... P02866 34096291
    3490 7mga:B (2.0) BS03 MAN ? GO:0030246 ... P02866 34096291
    3491 7mp4:A (2.43) BS01 MAN 3.1.1.1 GO:0017171 ... A0A0K8TUN4 N/A
    3492 7mp4:B (2.43) BS01 MAN 3.1.1.1 GO:0017171 ... A0A0K8TUN4 N/A
    3493 7mp4:C (2.43) BS01 MAN 3.1.1.1 GO:0017171 ... A0A0K8TUN4 N/A
    3494 7mp4:D (2.43) BS01 MAN 3.1.1.1 GO:0017171 ... A0A0K8TUN4 N/A
    3495 7mp4:E (2.43) BS01 MAN 3.1.1.1 GO:0017171 ... A0A0K8TUN4 N/A
    3496 7mp4:F (2.43) BS01 MAN 3.1.1.1 GO:0017171 ... A0A0K8TUN4 N/A
    3497 7mp4:G (2.43) BS01 MAN 3.1.1.1 GO:0017171 ... A0A0K8TUN4 N/A
    3498 7mp4:H (2.43) BS01 MAN 3.1.1.1 GO:0017171 ... A0A0K8TUN4 N/A
    3499 7mxd:A (3.4) BS01 MAN ? GO:0019031 ... I6NF57 35319830
    3500 7mxd:D (3.4) BS01 MAN N/A N/A N/A 35319830
    3501 7mxd:F (3.4) BS01 MAN ? GO:0019031 ... I6NF57 35319830
    3502 7mxd:G (3.4) BS01 MAN ? GO:0019031 ... I6NF57 35319830
    3503 7mxd:U (3.4) BS01 MAN N/A N/A N/A 35319830
    3504 7mxd:X (3.4) BS01 MAN N/A N/A N/A 35319830
    3505 7mxe:A (3.7) BS01 MAN N/A N/A N/A 34697307
    3506 7mxe:A (3.7) BS02 MAN N/A N/A N/A 34697307
    3507 7mxe:H (3.7) BS01 MAN N/A N/A N/A 34697307
    3508 7mxe:H (3.7) BS02 MAN N/A N/A N/A 34697307
    3509 7mxe:M (3.7) BS01 MAN N/A N/A N/A 34697307
    3510 7mxe:M (3.7) BS02 MAN N/A N/A N/A 34697307
    3511 7mxe:M (3.7) BS03 MAN N/A N/A N/A 34697307
    3512 7mxp:G (4.46) BS01 MAN N/A N/A N/A 34898670
    3513 7mxp:H (4.46) BS01 MAN N/A N/A N/A 34898670
    3514 7mxp:I (4.46) BS01 MAN N/A N/A N/A 34898670
    3515 7n28:A (4.2) BS01 MAN ? GO:0019031 ... I6NF57 35319830
    3516 7n28:D (4.2) BS01 MAN N/A N/A N/A 35319830
    3517 7n28:K (4.2) BS01 MAN N/A N/A N/A 35319830
    3518 7n28:U (4.2) BS01 MAN N/A N/A N/A 35319830
    3519 7n28:X (4.2) BS01 MAN N/A N/A N/A 35319830
    3520 7n65:C (4.15) BS02 MAN N/A N/A N/A 34263727
    3521 7n65:C (4.15) BS04 MAN N/A N/A N/A 34263727
    3522 7n65:G (4.15) BS02 MAN N/A N/A N/A 34263727
    3523 7n65:G (4.15) BS03 MAN N/A N/A N/A 34263727
    3524 7n65:H (4.15) BS01 MAN N/A N/A N/A 34263727
    3525 7n65:K (4.15) BS02 MAN N/A N/A N/A 34263727
    3526 7n65:K (4.15) BS04 MAN N/A N/A N/A 34263727
    3527 7n65:L (4.15) BS01 MAN N/A N/A N/A 34263727
    3528 7n6u:B (4.1) BS01 MAN ? GO:0005198 ... Q75760 34549974
    3529 7n6u:C (4.1) BS01 MAN ? GO:0005198 ... Q75760 34549974
    3530 7n6w:A (4.7) BS01 MAN ? GO:0005198 ... Q75760 34549974
    3531 7n6w:B (4.7) BS01 MAN ? GO:0005198 ... Q75760 34549974
    3532 7nl5:A (1.4) BS01 MAN ? GO:0005975 ... Q9Z4P9 33878235
    3533 7nl5:A (1.4) BS02 MAN ? GO:0005975 ... Q9Z4P9 33878235
    3534 7noz:C (3.9) BS02 MAN ? N/A P27918 36173177
    3535 7noz:C (3.9) BS03 MAN ? N/A P27918 36173177
    3536 7noz:D (3.9) BS01 MAN ? N/A P27918 36173177
    3537 7noz:D (3.9) BS02 MAN ? N/A P27918 36173177
    3538 7noz:D (3.9) BS03 MAN ? N/A P27918 36173177
    3539 7nsk:B (3.1) BS01 MAN 3.4.11.- GO:0002250 ... Q6P179 N/A
    3540 7nwf:A (2.0) BS02 MAN ? GO:0046872 ... Q8A0N4 34324829
    3541 7nwf:A (2.0) BS03 MAN ? GO:0046872 ... Q8A0N4 34324829
    3542 7nwf:A (2.0) BS04 MAN ? GO:0046872 ... Q8A0N4 34324829
    3543 7o0u:C (2.35) BS01 MAN ? GO:0005506 ... A0A143BHR6 35171663
    3544 7o0u:M (2.35) BS01 MAN N/A GO:0009772 ... N/A 35171663
    3545 7o0v:C (2.5) BS01 MAN ? GO:0005506 ... A0A143BHR6 35171663
    3546 7o0v:M (2.5) BS01 MAN N/A GO:0009772 ... N/A 35171663
    3547 7o0w:C (2.47) BS01 MAN ? GO:0005506 ... A0A143BHR6 35171663
    3548 7o0w:M (2.47) BS01 MAN N/A GO:0009772 ... N/A 35171663
    3549 7o0x:C (2.44) BS01 MAN ? GO:0005506 ... A0A143BHR6 35171663
    3550 7o0x:M (2.44) BS01 MAN N/A GO:0009772 ... N/A 35171663
    3551 7oci:G (3.46) BS01 MAN 2.4.99.18 GO:0005789 ... P33767 34974622
    3552 7oci:H (3.46) BS01 MAN 2.4.99.18 GO:0006487 ... Q02795 34974622
    3553 7oih:A (2.603) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 36048150
    3554 7oih:B (2.603) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 36048150
    3555 7oih:C (2.603) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 36048150
    3556 7oih:D (2.603) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 36048150
    3557 7oih:F (2.603) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 36048150
    3558 7oih:G (2.603) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 36048150
    3559 7oih:H (2.603) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 36048150
    3560 7ok5:A (2.97) BS01 MAN N/A N/A N/A 36329006
    3561 7ok5:A (2.97) BS02 MAN N/A N/A N/A 36329006
    3562 7ok5:B (2.97) BS01 MAN N/A N/A N/A 36329006
    3563 7ok5:B (2.97) BS02 MAN N/A N/A N/A 36329006
    3564 7oks:D (1.95) BS01 MAN ? GO:0038023 ... Q9UNN8 36068249
    3565 7p0k:AAA (2.2) BS01 MAN 3.1.4.39 GO:0001953 ... Q64610 34662125
    3566 7p0k:AAA (2.2) BS02 MAN 3.1.4.39 GO:0001953 ... Q64610 34662125
    3567 7p56:B (1.735) BS01 MAN ? GO:0042783 ... P26332 36943866
    3568 7p59:A (1.27) BS02 MAN ? N/A B3GVK1 36943866
    3569 7p59:A (1.27) BS03 MAN ? N/A B3GVK1 36943866
    3570 7p5a:A (1.95) BS02 MAN ? N/A B3GVK1 36943866
    3571 7p5a:A (1.95) BS03 MAN ? N/A B3GVK1 36943866
    3572 7p5b:A (1.13) BS02 MAN ? N/A B3GVK1 36943866
    3573 7p5b:A (1.13) BS03 MAN ? N/A B3GVK1 36943866
    3574 7p5d:A (1.42) BS02 MAN ? N/A B3GVK1 36943866
    3575 7p5d:A (1.42) BS03 MAN ? N/A B3GVK1 36943866
    3576 7pc0:K (3.0) BS01 MAN ? GO:0005576 ... P01391 35140402
    3577 7pc2:A (2.8) BS01 MAN ? GO:0019031 ... Q2N0S6 35230385
    3578 7pc2:J (2.8) BS01 MAN N/A N/A N/A 35230385
    3579 7pc2:L (2.8) BS01 MAN N/A N/A N/A 35230385
    3580 7pc2:M (2.8) BS01 MAN N/A N/A N/A 35230385
    3581 7pc2:M (2.8) BS02 MAN N/A N/A N/A 35230385
    3582 7pc2:N (2.8) BS01 MAN N/A N/A N/A 35230385
    3583 7pc2:O (2.8) BS01 MAN N/A N/A N/A 35230385
    3584 7pc2:O (2.8) BS02 MAN N/A N/A N/A 35230385
    3585 7pc2:P (2.8) BS01 MAN N/A N/A N/A 35230385
    3586 7pc2:Q (2.8) BS01 MAN N/A N/A N/A 35230385
    3587 7pc2:Q (2.8) BS02 MAN N/A N/A N/A 35230385
    3588 7pc2:R (2.8) BS01 MAN N/A N/A N/A 35230385
    3589 7pfp:A (6.1) BS04 MAN ? GO:0005509 ... P07911 35273390
    3590 7pfp:B (6.1) BS01 MAN ? GO:0005509 ... P07911 35273390
    3591 7pnb:E (3.46) BS01 MAN ? N/A Q4JBK8 36456543
    3592 7puk:A (2.69) BS02 MAN 3.2.1.52 GO:0004553 ... Q839P8 35241669
    3593 7puk:A (2.69) BS03 MAN 3.2.1.52 GO:0004553 ... Q839P8 35241669
    3594 7puk:A (2.69) BS04 MAN 3.2.1.52 GO:0004553 ... Q839P8 35241669
    3595 7puk:A (2.69) BS05 MAN 3.2.1.52 GO:0004553 ... Q839P8 35241669
    3596 7puk:C (2.69) BS02 MAN 3.2.1.52 GO:0004553 ... Q839P8 35241669
    3597 7puk:C (2.69) BS03 MAN 3.2.1.52 GO:0004553 ... Q839P8 35241669
    3598 7puk:C (2.69) BS04 MAN 3.2.1.52 GO:0004553 ... Q839P8 35241669
    3599 7puk:C (2.69) BS05 MAN 3.2.1.52 GO:0004553 ... Q839P8 35241669
    3600 7q3n:F (7.4) BS01 MAN ? GO:0007155 ... Q1R2J4 35273390

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417