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BioLiP
Download all results in tab-seperated text for 4535 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3201 7auw:C (2.8) BS02 MAN 3.4.24.63 GO:0004222 ... Q16820 33782129
    3202 7auw:C (2.8) BS03 MAN 3.4.24.63 GO:0004222 ... Q16820 33782129
    3203 7b26:A (3.4) BS01 MAN ? N/A P27918 35031611
    3204 7b26:B (3.4) BS02 MAN ? N/A P27918 35031611
    3205 7b26:B (3.4) BS03 MAN ? N/A P27918 35031611
    3206 7b26:B (3.4) BS04 MAN ? N/A P27918 35031611
    3207 7b26:B (3.4) BS05 MAN ? N/A P27918 35031611
    3208 7b26:B (3.4) BS06 MAN ? N/A P27918 35031611
    3209 7b26:B (3.4) BS07 MAN ? N/A P27918 35031611
    3210 7bbv:A (1.2) BS02 MAN ? GO:0000272 ... G2X3Y1 36639075
    3211 7bbv:A (1.2) BS03 MAN ? GO:0000272 ... G2X3Y1 36639075
    3212 7bbv:A (1.2) BS04 MAN ? GO:0000272 ... G2X3Y1 36639075
    3213 7bbv:A (1.2) BS05 MAN ? GO:0000272 ... G2X3Y1 36639075
    3214 7bbv:A (1.2) BS06 MAN ? GO:0000272 ... G2X3Y1 36639075
    3215 7bbv:B (1.2) BS02 MAN ? GO:0000272 ... G2X3Y1 36639075
    3216 7bbv:B (1.2) BS03 MAN ? GO:0000272 ... G2X3Y1 36639075
    3217 7bbv:B (1.2) BS04 MAN ? GO:0000272 ... G2X3Y1 36639075
    3218 7bbv:B (1.2) BS05 MAN ? GO:0000272 ... G2X3Y1 36639075
    3219 7bhd:A (1.4) BS01 MAN ? GO:0007155 ... P08191 36944399
    3220 7bhd:B (1.4) BS01 MAN ? GO:0007155 ... P08191 36944399
    3221 7bsm:D (2.8) BS01 MAN ? N/A D7DTD6 32651948
    3222 7bsm:F (2.8) BS01 MAN ? N/A D7DTD6 32651948
    3223 7bsm:G (2.8) BS01 MAN ? N/A D7DTD6 32651948
    3224 7bsm:H (2.8) BS01 MAN ? N/A D7DTD6 32651948
    3225 7bsm:I (2.8) BS01 MAN ? N/A D7DTD6 32651948
    3226 7bsm:J (2.8) BS01 MAN ? N/A D7DTD6 32651948
    3227 7bsm:K (2.8) BS01 MAN ? N/A D7DTD6 32651948
    3228 7bsm:L (2.8) BS01 MAN ? N/A D7DTD6 32651948
    3229 7bsm:M (2.8) BS01 MAN ? N/A D7DTD6 32651948
    3230 7bsm:N (2.8) BS01 MAN ? N/A D7DTD6 32651948
    3231 7bsn:A (2.6) BS01 MAN ? N/A D7DTD6 32651948
    3232 7bsn:B (2.6) BS01 MAN ? N/A D7DTD6 32651948
    3233 7bsn:C (2.6) BS01 MAN ? N/A D7DTD6 32651948
    3234 7bsn:D (2.6) BS01 MAN ? N/A D7DTD6 32651948
    3235 7bsn:E (2.6) BS01 MAN ? N/A D7DTD6 32651948
    3236 7bsn:F (2.6) BS01 MAN ? N/A D7DTD6 32651948
    3237 7bsn:G (2.6) BS01 MAN ? N/A D7DTD6 32651948
    3238 7bsn:H (2.6) BS01 MAN ? N/A D7DTD6 32651948
    3239 7bsn:I (2.6) BS01 MAN ? N/A D7DTD6 32651948
    3240 7bsn:J (2.6) BS01 MAN ? N/A D7DTD6 32651948
    3241 7bsn:K (2.6) BS01 MAN ? N/A D7DTD6 32651948
    3242 7bsn:L (2.6) BS01 MAN ? N/A D7DTD6 32651948
    3243 7bsn:M (2.6) BS01 MAN ? N/A D7DTD6 32651948
    3244 7bsn:N (2.6) BS01 MAN ? N/A D7DTD6 32651948
    3245 7bt8:B (2.7) BS01 MAN ? N/A D7DTD6 32651948
    3246 7bt8:D (2.7) BS01 MAN ? N/A D7DTD6 32651948
    3247 7bt8:E (2.7) BS01 MAN ? N/A D7DTD6 32651948
    3248 7bt9:A (2.45) BS01 MAN ? N/A D7DTD6 32651948
    3249 7bt9:B (2.45) BS01 MAN ? N/A D7DTD6 32651948
    3250 7bt9:C (2.45) BS01 MAN ? N/A D7DTD6 32651948
    3251 7bt9:D (2.45) BS01 MAN ? N/A D7DTD6 32651948
    3252 7bt9:E (2.45) BS01 MAN ? N/A D7DTD6 32651948
    3253 7bt9:F (2.45) BS01 MAN ? N/A D7DTD6 32651948
    3254 7bt9:G (2.45) BS01 MAN ? N/A D7DTD6 32651948
    3255 7bt9:H (2.45) BS01 MAN ? N/A D7DTD6 32651948
    3256 7bt9:I (2.45) BS01 MAN ? N/A D7DTD6 32651948
    3257 7bt9:J (2.45) BS01 MAN ? N/A D7DTD6 32651948
    3258 7bt9:K (2.45) BS01 MAN ? N/A D7DTD6 32651948
    3259 7bt9:L (2.45) BS01 MAN ? N/A D7DTD6 32651948
    3260 7bt9:M (2.45) BS01 MAN ? N/A D7DTD6 32651948
    3261 7bt9:N (2.45) BS01 MAN ? N/A D7DTD6 32651948
    3262 7btl:A (2.25) BS01 MAN ? N/A D7DTD6 32651948
    3263 7btl:B (2.25) BS01 MAN ? N/A D7DTD6 32651948
    3264 7btl:C (2.25) BS01 MAN ? N/A D7DTD6 32651948
    3265 7btl:D (2.25) BS01 MAN ? N/A D7DTD6 32651948
    3266 7btl:E (2.25) BS01 MAN ? N/A D7DTD6 32651948
    3267 7btl:F (2.25) BS01 MAN ? N/A D7DTD6 32651948
    3268 7btl:G (2.25) BS01 MAN ? N/A D7DTD6 32651948
    3269 7c3c:A (1.301) BS01 MAN ? N/A G1XA82 32698064
    3270 7d3e:A (2.8) BS01 MAN 1.11.1.-
    1.6.3.1
    GO:0004601 ... Q9NRD9 33420071
    3271 7d3e:A (2.8) BS02 MAN 1.11.1.-
    1.6.3.1
    GO:0004601 ... Q9NRD9 33420071
    3272 7d3e:A (2.8) BS03 MAN 1.11.1.-
    1.6.3.1
    GO:0004601 ... Q9NRD9 33420071
    3273 7d3e:B (2.8) BS01 MAN ? GO:0005515 ... Q1HG43 33420071
    3274 7d3e:B (2.8) BS02 MAN ? GO:0005515 ... Q1HG43 33420071
    3275 7d3e:B (2.8) BS03 MAN ? GO:0005515 ... Q1HG43 33420071
    3276 7d3e:C (2.8) BS01 MAN 1.11.1.-
    1.6.3.1
    GO:0004601 ... Q9NRD9 33420071
    3277 7d3e:C (2.8) BS02 MAN 1.11.1.-
    1.6.3.1
    GO:0004601 ... Q9NRD9 33420071
    3278 7d3e:C (2.8) BS03 MAN 1.11.1.-
    1.6.3.1
    GO:0004601 ... Q9NRD9 33420071
    3279 7d3e:D (2.8) BS01 MAN ? GO:0005515 ... Q1HG43 33420071
    3280 7d3e:D (2.8) BS02 MAN ? GO:0005515 ... Q1HG43 33420071
    3281 7d3e:D (2.8) BS03 MAN ? GO:0005515 ... Q1HG43 33420071
    3282 7d3f:A (2.6) BS02 MAN 1.11.1.-
    1.6.3.1
    GO:0004601 ... Q9NRD9 33420071
    3283 7d3f:A (2.6) BS03 MAN 1.11.1.-
    1.6.3.1
    GO:0004601 ... Q9NRD9 33420071
    3284 7d3f:A (2.6) BS04 MAN 1.11.1.-
    1.6.3.1
    GO:0004601 ... Q9NRD9 33420071
    3285 7d3f:A (2.6) BS05 MAN 1.11.1.-
    1.6.3.1
    GO:0004601 ... Q9NRD9 33420071
    3286 7d3f:B (2.6) BS01 MAN ? GO:0005515 ... Q1HG43 33420071
    3287 7d3f:B (2.6) BS02 MAN ? GO:0005515 ... Q1HG43 33420071
    3288 7d3f:B (2.6) BS03 MAN ? GO:0005515 ... Q1HG43 33420071
    3289 7d3f:C (2.6) BS02 MAN 1.11.1.-
    1.6.3.1
    GO:0004601 ... Q9NRD9 33420071
    3290 7d3f:C (2.6) BS03 MAN 1.11.1.-
    1.6.3.1
    GO:0004601 ... Q9NRD9 33420071
    3291 7d3f:C (2.6) BS04 MAN 1.11.1.-
    1.6.3.1
    GO:0004601 ... Q9NRD9 33420071
    3292 7d3f:C (2.6) BS05 MAN 1.11.1.-
    1.6.3.1
    GO:0004601 ... Q9NRD9 33420071
    3293 7d3f:D (2.6) BS01 MAN ? GO:0005515 ... Q1HG43 33420071
    3294 7d3f:D (2.6) BS02 MAN ? GO:0005515 ... Q1HG43 33420071
    3295 7d3f:D (2.6) BS03 MAN ? GO:0005515 ... Q1HG43 33420071
    3296 7dc4:A (0.95) BS02 MAN N/A N/A N/A 33895142
    3297 7dc4:A (0.95) BS03 MAN N/A N/A N/A 33895142
    3298 7dc4:A (0.95) BS05 MAN N/A N/A N/A 33895142
    3299 7dc4:A (0.95) BS06 MAN N/A N/A N/A 33895142
    3300 7dc4:B (0.95) BS02 MAN N/A N/A N/A 33895142
    3301 7dc4:B (0.95) BS03 MAN N/A N/A N/A 33895142
    3302 7dc4:B (0.95) BS05 MAN N/A N/A N/A 33895142
    3303 7dc4:B (0.95) BS06 MAN N/A N/A N/A 33895142
    3304 7ded:B (2.228) BS01 MAN ? N/A D7DTD6 33822039
    3305 7ded:C (2.228) BS01 MAN ? N/A D7DTD6 33822039
    3306 7ded:E (2.228) BS01 MAN ? N/A D7DTD6 33822039
    3307 7ded:F (2.228) BS01 MAN ? N/A D7DTD6 33822039
    3308 7drb:C (3.3) BS01 MAN ? N/A A0A2I8B6R1 36131021
    3309 7drb:D (3.3) BS01 MAN ? N/A A0A2I8B6R1 36131021
    3310 7drb:D (3.3) BS02 MAN ? N/A A0A2I8B6R1 36131021
    3311 7drc:C (2.92) BS01 MAN ? N/A A0A2I8B6R1 36131021
    3312 7dwa:A (1.62) BS01 MAN ? N/A A0A140EH91 33865894
    3313 7dwa:B (1.62) BS01 MAN ? N/A A0A140EH91 33865894
    3314 7dyr:B (2.28) BS01 MAN ? GO:0005886 ... P69801 33820910
    3315 7dyr:C (2.28) BS01 MAN ? GO:0005886 ... P69805 33820910
    3316 7dyr:E (2.28) BS01 MAN ? GO:0005886 ... P69801 33820910
    3317 7dyr:F (2.28) BS01 MAN ? GO:0005886 ... P69805 33820910
    3318 7dyr:Y (2.28) BS01 MAN ? GO:0005886 ... P69801 33820910
    3319 7dyr:Z (2.28) BS01 MAN ? GO:0005886 ... P69805 33820910
    3320 7e9k:D (2.05) BS03 MAN 2.4.1.312 GO:0001764 ... Q5NDF2 33893702
    3321 7e9l:A (2.1) BS03 MAN 2.4.1.312 GO:0001764 ... Q5NDF2 33893702
    3322 7ey1:B (2.46) BS01 MAN 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    3323 7ey2:A (2.43) BS02 MAN 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    3324 7ey2:B (2.43) BS01 MAN 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    3325 7ey2:B (2.43) BS02 MAN 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    3326 7ey2:C (2.43) BS01 MAN 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    3327 7ey2:D (2.43) BS01 MAN 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    3328 7ey2:E (2.43) BS01 MAN 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    3329 7ey2:E (2.43) BS02 MAN 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    3330 7ey2:F (2.43) BS01 MAN 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    3331 7ey2:F (2.43) BS02 MAN 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    3332 7fbl:A (1.419) BS01 MAN ? N/A C0HM62 36433967
    3333 7fe1:A (1.72) BS02 MAN ? GO:0000224 ... Q832K9 35049087
    3334 7fe1:B (1.72) BS02 MAN ? GO:0000224 ... Q832K9 35049087
    3335 7fe1:C (1.72) BS02 MAN ? GO:0000224 ... Q832K9 35049087
    3336 7fe1:D (1.72) BS02 MAN ? GO:0000224 ... Q832K9 35049087
    3337 7fe2:A (1.75) BS02 MAN ? GO:0000224 ... Q832K9 35049087
    3338 7fe2:B (1.75) BS02 MAN ? GO:0000224 ... Q832K9 35049087
    3339 7fe2:C (1.75) BS02 MAN ? GO:0000224 ... Q832K9 35049087
    3340 7fe2:D (1.75) BS02 MAN ? GO:0000224 ... Q832K9 35049087
    3341 7fiq:A (2.22) BS01 MAN 2.4.1.339 GO:0009298 ... B0K2C3 34587555
    3342 7fiq:B (2.22) BS01 MAN 2.4.1.339 GO:0009298 ... B0K2C3 34587555
    3343 7fiq:C (2.22) BS01 MAN 2.4.1.339 GO:0009298 ... B0K2C3 34587555
    3344 7fiq:D (2.22) BS01 MAN 2.4.1.339 GO:0009298 ... B0K2C3 34587555
    3345 7jgz:A (3.51) BS01 MAN ? GO:0005509 ... Q91XX0 35253643
    3346 7jgz:A (3.51) BS02 MAN ? GO:0005509 ... Q91XX0 35253643
    3347 7jpd:D (2.95) BS01 MAN ? GO:0019031 ... Q20MG8 37117205
    3348 7jue:A (1.4) BS01 MAN ? N/A P22897 33545173
    3349 7juf:A (1.4) BS01 MAN ? N/A P22897 33545173
    3350 7juf:B (1.4) BS01 MAN ? N/A P22897 33545173
    3351 7juf:B (1.4) BS02 MAN ? N/A P22897 33545173
    3352 7jug:A (1.4) BS02 MAN ? N/A P22897 33545173
    3353 7juh:A (1.4) BS03 MAN ? N/A P22897 33545173
    3354 7k37:H (2.8) BS01 MAN N/A N/A N/A 33253316
    3355 7k37:J (2.8) BS01 MAN N/A N/A N/A 33253316
    3356 7k39:H (3.0) BS01 MAN N/A N/A N/A 33253316
    3357 7k3a:H (4.2) BS01 MAN N/A N/A N/A 33253316
    3358 7k3a:H (4.2) BS02 MAN N/A N/A N/A 33253316
    3359 7k3a:J (4.2) BS01 MAN N/A N/A N/A 33253316
    3360 7k3a:L (4.2) BS01 MAN N/A N/A N/A 33253316
    3361 7k4o:A (1.65) BS01 MAN 3.1.1.- GO:0003674 ... A2QIR3 33559614
    3362 7kc1:E (3.41) BS01 MAN N/A N/A N/A 34135892
    3363 7kc1:H (3.41) BS01 MAN N/A N/A N/A 34135892
    3364 7kc1:J (3.41) BS01 MAN N/A N/A N/A 34135892
    3365 7kde:J (3.55) BS01 MAN N/A N/A N/A 33084569
    3366 7kde:J (3.55) BS02 MAN N/A N/A N/A 33084569
    3367 7kde:M (3.55) BS01 MAN N/A N/A N/A 33084569
    3368 7kde:O (3.55) BS01 MAN N/A N/A N/A 33084569
    3369 7kde:O (3.55) BS02 MAN N/A N/A N/A 33084569
    3370 7kde:Q (3.55) BS01 MAN N/A N/A N/A 33084569
    3371 7kde:S (3.55) BS01 MAN N/A N/A N/A 33084569
    3372 7kde:S (3.55) BS02 MAN N/A N/A N/A 33084569
    3373 7khr:a (3.62) BS01 MAN ? GO:0000220 ... Q29466 33741963
    3374 7kmd:A (3.39229) BS01 MAN N/A N/A N/A 34156262
    3375 7kmd:L (3.39229) BS01 MAN N/A N/A N/A 34156262
    3376 7kmd:L (3.39229) BS02 MAN N/A N/A N/A 34156262
    3377 7kqg:A (2.6) BS01 MAN ? GO:0019031 ... E1TVD5 33274930
    3378 7l02:H (3.2) BS01 MAN N/A N/A N/A 34019795
    3379 7l02:M (3.2) BS03 MAN N/A N/A N/A 34019795
    3380 7l02:M (3.2) BS04 MAN N/A N/A N/A 34019795
    3381 7l02:M (3.2) BS05 MAN N/A N/A N/A 34019795
    3382 7l06:D (3.3) BS01 MAN N/A N/A N/A 34019795
    3383 7l06:G (3.3) BS02 MAN N/A N/A N/A 34019795
    3384 7l06:G (3.3) BS03 MAN N/A N/A N/A 34019795
    3385 7l06:H (3.3) BS01 MAN N/A N/A N/A 34019795
    3386 7l06:H (3.3) BS02 MAN N/A N/A N/A 34019795
    3387 7l06:M (3.3) BS03 MAN N/A N/A N/A 34019795
    3388 7l06:M (3.3) BS04 MAN N/A N/A N/A 34019795
    3389 7l09:H (3.1) BS01 MAN N/A N/A N/A 34019795
    3390 7l09:M (3.1) BS03 MAN N/A N/A N/A 34019795
    3391 7l09:M (3.1) BS04 MAN N/A N/A N/A 34019795
    3392 7l09:M (3.1) BS05 MAN N/A N/A N/A 34019795
    3393 7l7u:A (3.8) BS01 MAN ? GO:0019031 ... Q2N0S6 34376662
    3394 7l7u:C (3.8) BS01 MAN ? GO:0019031 ... Q2N0S6 34376662
    3395 7l7u:E (3.8) BS01 MAN ? GO:0019031 ... Q2N0S6 34376662
    3396 7l8w:H (4.1) BS01 MAN N/A N/A N/A 34376662
    3397 7lae:B (2.97) BS03 MAN 1.11.2.2 GO:0004601 ... P05164 33811992
    3398 7lae:E (2.97) BS02 MAN 1.11.2.2 GO:0004601 ... P05164 33811992
    3399 7lag:B (2.85) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 33811992
    3400 7lag:E (2.85) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 33811992

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417