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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 4535 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3001 6udj:B (2.5) BS03 MAN ? N/A Q8N355 32004464
    3002 6udj:E (2.5) BS01 MAN ? N/A Q6PIL8 32004464
    3003 6udj:I (2.5) BS01 MAN ? N/A Q6PIL8 32004464
    3004 6udj:L (2.5) BS01 MAN ? N/A Q8N355 32004464
    3005 6udj:L (2.5) BS02 MAN ? N/A Q8N355 32004464
    3006 6udj:O (2.5) BS01 MAN ? N/A Q6PIL8 32004464
    3007 6udj:R (2.5) BS01 MAN ? N/A Q8N355 32004464
    3008 6udj:R (2.5) BS02 MAN ? N/A Q8N355 32004464
    3009 6udj:R (2.5) BS03 MAN ? N/A Q8N355 32004464
    3010 6udk:B (3.9) BS01 MAN ? N/A Q8N355 32004464
    3011 6udk:I (3.9) BS01 MAN ? N/A Q8N355 32004464
    3012 6ulc:H (4.6) BS01 MAN N/A N/A N/A 31931014
    3013 6ulc:L (4.6) BS01 MAN N/A N/A N/A 31931014
    3014 6utk:D (3.8) BS01 MAN N/A N/A N/A N/A
    3015 6utk:H (3.8) BS02 MAN N/A N/A N/A N/A
    3016 6utk:L (3.8) BS01 MAN N/A N/A N/A N/A
    3017 6uwz:A (2.69) BS01 MAN ? GO:0004888 ... P02710 32275860
    3018 6uwz:D (2.69) BS01 MAN ? GO:0004888 ... P02710 32275860
    3019 6uwz:G (2.69) BS01 MAN ? GO:0005515 ... P60615 32275860
    3020 6v6w:D (6.5) BS01 MAN N/A N/A N/A N/A
    3021 6vfq:A (2.3) BS10 MAN ? GO:0005509 ... Q9P2E7 32101743
    3022 6vfq:A (2.3) BS11 MAN ? GO:0005509 ... Q9P2E7 32101743
    3023 6vft:A (3.71) BS10 MAN ? GO:0005509 ... O14917 32101743
    3024 6vft:B (3.71) BS10 MAN ? GO:0005509 ... O14917 32101743
    3025 6vft:C (3.71) BS10 MAN ? GO:0005509 ... O14917 32101743
    3026 6vft:D (3.71) BS10 MAN ? GO:0005509 ... O14917 32101743
    3027 6vfv:A (2.9) BS01 MAN ? GO:0005509 ... O95206 32101743
    3028 6vfw:A (3.6) BS10 MAN ? GO:0005509 ... Q9P2E7 32101743
    3029 6vfw:B (3.6) BS10 MAN ? GO:0005509 ... Q9P2E7 32101743
    3030 6vfw:B (3.6) BS11 MAN ? GO:0005509 ... Q9P2E7 32101743
    3031 6vfw:C (3.6) BS10 MAN ? GO:0005509 ... Q9P2E7 32101743
    3032 6vfw:C (3.6) BS11 MAN ? GO:0005509 ... Q9P2E7 32101743
    3033 6vfw:D (3.6) BS10 MAN ? GO:0005509 ... Q9P2E7 32101743
    3034 6vfw:D (3.6) BS11 MAN ? GO:0005509 ... Q9P2E7 32101743
    3035 6vfw:E (3.6) BS10 MAN ? GO:0005509 ... Q9P2E7 32101743
    3036 6vfw:E (3.6) BS11 MAN ? GO:0005509 ... Q9P2E7 32101743
    3037 6vg1:A (2.0) BS16 MAN ? GO:0005509 ... Q6GLU2 32101743
    3038 6vg1:B (2.0) BS16 MAN ? GO:0005509 ... Q6GLU2 32101743
    3039 6vg1:B (2.0) BS17 MAN ? GO:0005509 ... Q6GLU2 32101743
    3040 6vg4:A (3.298) BS16 MAN ? GO:0005509 ... Q9P2E7 32101743
    3041 6vg4:A (3.298) BS17 MAN ? GO:0005509 ... Q9P2E7 32101743
    3042 6vi0:D (3.43) BS01 MAN N/A N/A N/A 34328065
    3043 6vi0:D (3.43) BS02 MAN N/A N/A N/A 34328065
    3044 6vi0:J (3.43) BS01 MAN N/A N/A N/A 34328065
    3045 6vi0:J (3.43) BS02 MAN N/A N/A N/A 34328065
    3046 6vi0:L (3.43) BS01 MAN N/A N/A N/A 34328065
    3047 6vi0:L (3.43) BS02 MAN N/A N/A N/A 34328065
    3048 6vld:A (2.28) BS01 MAN 2.4.1.68 N/A Q9BYC5 32220931
    3049 6vlr:C (4.42) BS01 MAN N/A N/A N/A 32866207
    3050 6vtt:H (3.7) BS01 MAN N/A N/A N/A 32268107
    3051 6vtu:H (2.61) BS01 MAN ? N/A S6B291 34019795
    3052 6vv5:A (3.5) BS01 MAN ? GO:0016020 ... S5RJN4 33378641
    3053 6vv5:B (3.5) BS01 MAN ? GO:0016020 ... S5RJN4 33378641
    3054 6vv5:C (3.5) BS01 MAN ? GO:0016020 ... S5RJN4 33378641
    3055 6vy2:N (4.86) BS01 MAN N/A N/A N/A 32315598
    3056 6vzi:D (2.716) BS01 MAN N/A N/A N/A 32295908
    3057 6vzi:H (2.716) BS01 MAN N/A N/A N/A 32295908
    3058 6vzi:L (2.716) BS01 MAN N/A N/A N/A 32295908
    3059 6vzi:L (2.716) BS02 MAN N/A N/A N/A 32295908
    3060 6w03:D (2.4) BS01 MAN N/A N/A N/A 32295908
    3061 6w03:D (2.4) BS02 MAN N/A N/A N/A 32295908
    3062 6w03:L (2.4) BS01 MAN N/A N/A N/A 32295908
    3063 6w03:L (2.4) BS02 MAN N/A N/A N/A 32295908
    3064 6w35:A (1.98) BS01 MAN ? GO:0003676 ... K7CID1 32584034
    3065 6w35:A (1.98) BS02 MAN ? GO:0003676 ... K7CID1 32584034
    3066 6w5s:A (3.0) BS01 MAN ? GO:0005319 ... O15118 32544384
    3067 6w5t:A (3.7) BS01 MAN ? GO:0005319 ... O15118 32544384
    3068 6w9g:H (1.82) BS01 MAN N/A N/A N/A 32845612
    3069 6w9g:K (1.82) BS01 MAN N/A N/A N/A 32845612
    3070 6w9g:X (1.82) BS01 MAN N/A N/A N/A 32845612
    3071 6wix:D (2.67) BS02 MAN N/A N/A N/A 33238130
    3072 6wix:D (2.67) BS03 MAN N/A N/A N/A 33238130
    3073 6wix:H (2.67) BS01 MAN N/A N/A N/A 33238130
    3074 6wix:L (2.67) BS01 MAN N/A N/A N/A 33238130
    3075 6wix:L (2.67) BS02 MAN N/A N/A N/A 33238130
    3076 6wix:L (2.67) BS03 MAN N/A N/A N/A 33238130
    3077 6wlw:R (3.0) BS03 MAN ? GO:0000220 ... Q93050 33065002
    3078 6wm2:R (3.1) BS03 MAN ? GO:0000220 ... Q93050 33065002
    3079 6wml:B (2.5) BS02 MAN ? GO:0002224 ... Q9NR97 32407112
    3080 6wxr:B (3.2) BS01 MAN ? GO:0005515 ... Q8VE49 32929281
    3081 6wxu:A (2.7) BS01 MAN 1.6.3.1 GO:0004601 ... A2AQ92 32929281
    3082 6wxu:A (2.7) BS02 MAN 1.6.3.1 GO:0004601 ... A2AQ92 32929281
    3083 6wxu:B (2.7) BS01 MAN ? GO:0005515 ... Q8VE49 32929281
    3084 6wxu:B (2.7) BS02 MAN ? GO:0005515 ... Q8VE49 32929281
    3085 6wxu:B (2.7) BS03 MAN ? GO:0005515 ... Q8VE49 32929281
    3086 6wxu:C (2.7) BS01 MAN 1.6.3.1 GO:0004601 ... A2AQ92 32929281
    3087 6wxu:C (2.7) BS02 MAN 1.6.3.1 GO:0004601 ... A2AQ92 32929281
    3088 6wxu:D (2.7) BS01 MAN ? GO:0005515 ... Q8VE49 32929281
    3089 6wxu:D (2.7) BS02 MAN ? GO:0005515 ... Q8VE49 32929281
    3090 6wxu:D (2.7) BS03 MAN ? GO:0005515 ... Q8VE49 32929281
    3091 6wxv:B (3.3) BS01 MAN ? GO:0005515 ... Q8VE49 32929281
    3092 6wxz:B (2.226) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 33007547
    3093 6wxz:E (2.226) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 33007547
    3094 6wy0:B (2.799) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 33007547
    3095 6wy0:E (2.799) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 33007547
    3096 6wy0:G (2.799) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 33007547
    3097 6wy0:I (2.799) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 33007547
    3098 6wy5:B (2.898) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 33007547
    3099 6wy5:E (2.898) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 33007547
    3100 6wy7:B (2.089) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 33007547
    3101 6wy7:E (2.089) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 33007547
    3102 6wyd:B (2.55) BS02 MAN 1.11.2.2 GO:0004601 ... P05164 33007547
    3103 6wyd:E (2.55) BS02 MAN 1.11.2.2 GO:0004601 ... P05164 33007547
    3104 6wyd:G (2.55) BS03 MAN 1.11.2.2 GO:0004601 ... P05164 33007547
    3105 6wyd:I (2.55) BS03 MAN 1.11.2.2 GO:0004601 ... P05164 33007547
    3106 6x3s:D (3.12) BS01 MAN ? GO:0004888 ... P14867 32879488
    3107 6x3s:E (3.12) BS01 MAN ? GO:0004888 ... P18507 32879488
    3108 6x3s:E (3.12) BS02 MAN ? GO:0004888 ... P18507 32879488
    3109 6x3s:E (3.12) BS03 MAN ? GO:0004888 ... P18507 32879488
    3110 6x3t:D (2.55) BS01 MAN ? GO:0004888 ... P14867 32879488
    3111 6x3t:E (2.55) BS01 MAN ? GO:0004888 ... P18507 32879488
    3112 6x3u:D (3.5) BS01 MAN ? GO:0004888 ... P14867 32879488
    3113 6x3u:E (3.5) BS01 MAN ? GO:0004888 ... P18507 32879488
    3114 6x3v:D (3.5) BS01 MAN ? GO:0004888 ... P14867 32879488
    3115 6x3v:E (3.5) BS01 MAN ? GO:0004888 ... P18507 32879488
    3116 6x3w:D (3.3) BS01 MAN ? GO:0004888 ... P14867 32879488
    3117 6x3w:E (3.3) BS01 MAN ? GO:0004888 ... P18507 32879488
    3118 6x3x:D (2.92) BS01 MAN ? GO:0004888 ... P14867 32879488
    3119 6x3x:E (2.92) BS01 MAN ? GO:0004888 ... P18507 32879488
    3120 6x3z:D (3.23) BS01 MAN ? GO:0004888 ... P14867 32879488
    3121 6x3z:E (3.23) BS01 MAN ? GO:0004888 ... P18507 32879488
    3122 6x40:D (2.86) BS01 MAN ? GO:0004888 ... P14867 32879488
    3123 6x40:E (2.86) BS01 MAN ? GO:0004888 ... P18507 32879488
    3124 6x5b:A (3.6) BS01 MAN ? GO:0019031 ... B3UES2 33238117
    3125 6x5b:D (3.6) BS01 MAN ? GO:0019031 ... B3UES2 33238117
    3126 6x5b:J (3.6) BS01 MAN ? GO:0019031 ... B3UES2 33238117
    3127 6x5c:A (4.04) BS01 MAN ? GO:0019031 ... B3UES2 33238117
    3128 6x5c:D (4.04) BS01 MAN ? GO:0019031 ... B3UES2 33238117
    3129 6x5c:E (4.04) BS01 MAN ? GO:0019031 ... B3UES2 33238117
    3130 6x5r:B (2.4) BS01 MAN 2.4.1.68 GO:0000139 ... Q9BYC5 33004438
    3131 6x5s:A (3.3) BS01 MAN 2.4.1.68 N/A Q9BYC5 33004438
    3132 6x5u:B (3.2) BS01 MAN 2.4.1.68 GO:0000139 ... Q9BYC5 33004438
    3133 6x5u:B (3.2) BS02 MAN 2.4.1.68 GO:0000139 ... Q9BYC5 33004438
    3134 6x5u:D (3.2) BS01 MAN 2.4.1.68 GO:0000139 ... Q9BYC5 33004438
    3135 6x5u:E (3.2) BS01 MAN 2.4.1.68 GO:0000139 ... Q9BYC5 33004438
    3136 6x5u:F (3.2) BS01 MAN 2.4.1.68 GO:0000139 ... Q9BYC5 33004438
    3137 6x7h:A (1.25) BS01 MAN ? GO:0030246 ... P81180 36472898
    3138 6x7h:A (1.25) BS02 MAN ? GO:0030246 ... P81180 36472898
    3139 6x7h:B (1.25) BS01 MAN ? GO:0030246 ... P81180 36472898
    3140 6x7h:B (1.25) BS02 MAN ? GO:0030246 ... P81180 36472898
    3141 6x7x:A (1.3) BS07 MAN ? N/A A1YIY3 33824212
    3142 6xrt:H (3.9) BS01 MAN N/A N/A N/A 33214287
    3143 6xsv:A (1.65) BS01 MAN 3.2.1.1 GO:0004556 ... P0C1B3 33814275
    3144 6xsv:A (1.65) BS02 MAN 3.2.1.1 GO:0004556 ... P0C1B3 33814275
    3145 6xyy:A (2.7) BS01 MAN 3.1.1.7 GO:0001507 ... P07140 32155891
    3146 6y5f:B (3.2) BS01 MAN ? GO:0019049 ... Q9E006 32937107
    3147 6y5m:A (2.011) BS01 MAN 3.1.4.39 GO:0003676 ... Q9R1E6 33160025
    3148 6y62:B (2.2) BS01 MAN ? GO:0019049 ... Q5MYC0 32937107
    3149 6y8f:A (1.472) BS01 MAN ? GO:0005975 ... A0A7M4DUB5 35414716
    3150 6y8f:A (1.472) BS02 MAN ? GO:0005975 ... A0A7M4DUB5 35414716
    3151 6y8f:A (1.472) BS03 MAN ? GO:0005975 ... A0A7M4DUB5 35414716
    3152 6yhw:A (1.962) BS01 MAN ? GO:0007155 ... P08191 26946458
    3153 6yhw:B (1.962) BS01 MAN ? GO:0007155 ... P08191 26946458
    3154 6yjs:AAA (1.6) BS01 MAN 2.4.1.155 GO:0006487 ... Q09328 N/A
    3155 6yjs:BBB (1.6) BS01 MAN 2.4.1.155 GO:0006487 ... Q09328 N/A
    3156 6yju:AAA (1.96) BS01 MAN 2.4.1.155 GO:0006487 ... Q09328 N/A
    3157 6yju:BBB (1.96) BS01 MAN 2.4.1.155 GO:0006487 ... Q09328 N/A
    3158 6yjv:AAA (1.7) BS01 MAN 2.4.1.155 GO:0006487 ... Q09328 N/A
    3159 6yjv:BBB (1.7) BS01 MAN 2.4.1.155 GO:0006487 ... Q09328 N/A
    3160 6ysc:B (2.05) BS02 MAN ? N/A P0DOX5 33009381
    3161 6z32:A (3.47) BS01 MAN ? GO:0005537 ... P11717 32877646
    3162 6z32:B (3.47) BS01 MAN ? GO:0005537 ... P11717 32877646
    3163 6z7a:A (1.21) BS01 MAN ? N/A A0A291L8F4 N/A
    3164 6z7b:B (1.86) BS01 MAN ? N/A A0A291L8F4 33462435
    3165 6z7c:A (1.64) BS01 MAN ? N/A A0A291L8F4 33462435
    3166 6z7d:A (1.75) BS01 MAN ? N/A A0A291L8F4 33462435
    3167 6z7e:A (1.663) BS01 MAN ? N/A A0A291L8F4 33462435
    3168 6z8g:A (1.56) BS02 MAN ? GO:0042783 ... Q58NS4 33462435
    3169 6z8g:B (1.56) BS02 MAN ? GO:0042783 ... Q58NS4 33462435
    3170 6z8h:A (1.38) BS02 MAN ? GO:0042783 ... Q58NS4 33462435
    3171 6z8h:B (1.38) BS02 MAN ? GO:0042783 ... Q58NS4 33462435
    3172 6zbw:A (1.4) BS01 MAN 3.2.1.101 GO:0005975 ... A0A6B9HEB8 33878235
    3173 6zbw:B (1.4) BS01 MAN 3.2.1.101 GO:0005975 ... A0A6B9HEB8 33878235
    3174 6zbx:A (1.35) BS03 MAN 3.2.1.101 GO:0005975 ... A0A6B9HEB8 33878235
    3175 6zbx:B (1.35) BS03 MAN 3.2.1.101 GO:0005975 ... A0A6B9HEB8 33878235
    3176 6zfa:AAA (1.8) BS01 MAN 3.2.1.130 GO:0016798 ... Q5SRI9 33154157
    3177 6zfa:AAA (1.8) BS02 MAN 3.2.1.130 GO:0016798 ... Q5SRI9 33154157
    3178 6zfn:AAA (1.1) BS02 MAN 3.2.1.130 GO:0016798 ... Q5SRI9 33154157
    3179 6zj1:AAA (1.957) BS02 MAN 3.2.1.130 GO:0016798 ... Q5SRI9 33154157
    3180 6zj1:AAA (1.957) BS03 MAN 3.2.1.130 GO:0016798 ... Q5SRI9 33154157
    3181 6zjm:B (11.4) BS01 MAN ? GO:0019049 ... Q9E006 32937107
    3182 6zjm:D (11.4) BS01 MAN ? GO:0019049 ... Q9E006 32937107
    3183 6zjm:F (11.4) BS01 MAN ? GO:0019049 ... Q9E006 32937107
    3184 6zjm:H (11.4) BS01 MAN ? GO:0019049 ... Q9E006 32937107
    3185 7a8v:A (1.94961) BS01 MAN 3.2.1.4 N/A A0A482A9N4 N/A
    3186 7a8v:A (1.94961) BS02 MAN 3.2.1.4 N/A A0A482A9N4 N/A
    3187 7aq1:A (2.413) BS01 MAN 3.4.24.63 GO:0004222 ... Q16820 34073350
    3188 7aq1:A (2.413) BS02 MAN 3.4.24.63 GO:0004222 ... Q16820 34073350
    3189 7aq1:A (2.413) BS03 MAN 3.4.24.63 GO:0004222 ... Q16820 34073350
    3190 7aq1:B (2.413) BS01 MAN 3.4.24.63 GO:0004222 ... Q16820 34073350
    3191 7aq1:B (2.413) BS02 MAN 3.4.24.63 GO:0004222 ... Q16820 34073350
    3192 7aqx:B (1.499) BS01 MAN ? GO:0042783 ... P26332 34731611
    3193 7aqz:A (1.3) BS01 MAN ? GO:0042783 ... P26332 34731611
    3194 7aqz:B (1.3) BS01 MAN ? GO:0042783 ... P26332 34731611
    3195 7aua:A (2.93) BS01 MAN 2.4.1.223 GO:0000287 ... O43909 35676258
    3196 7aua:B (2.93) BS01 MAN 2.4.1.223 GO:0000287 ... O43909 35676258
    3197 7auw:A (2.8) BS01 MAN 3.4.24.63 GO:0004222 ... Q16820 33782129
    3198 7auw:A (2.8) BS02 MAN 3.4.24.63 GO:0004222 ... Q16820 33782129
    3199 7auw:A (2.8) BS03 MAN 3.4.24.63 GO:0004222 ... Q16820 33782129
    3200 7auw:C (2.8) BS01 MAN 3.4.24.63 GO:0004222 ... Q16820 33782129

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417