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BioLiP
Download all results in tab-seperated text for 4535 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2401 6cue:n (4.0) BS01 MAN N/A N/A N/A 29975771
    2402 6cuf:6 (4.0) BS01 MAN N/A N/A N/A 29975771
    2403 6cuf:N (4.0) BS01 MAN N/A N/A N/A 29975771
    2404 6cuf:n (4.0) BS01 MAN N/A N/A N/A 29975771
    2405 6cv7:A (1.692) BS06 MAN ? GO:0005509 ... Q99PJ1 30057206
    2406 6cxg:H (2.298) BS03 MAN N/A N/A N/A 30834312
    2407 6cxg:H (2.298) BS04 MAN N/A N/A N/A 30834312
    2408 6cxg:M (2.298) BS03 MAN N/A N/A N/A 30834312
    2409 6cxg:M (2.298) BS04 MAN N/A N/A N/A 30834312
    2410 6cxl:H (3.586) BS01 MAN N/A N/A N/A 30834312
    2411 6cxl:H (3.586) BS02 MAN N/A N/A N/A 30834312
    2412 6cxl:K (3.586) BS01 MAN N/A N/A N/A 30834312
    2413 6cxl:M (3.586) BS01 MAN N/A N/A N/A 30834312
    2414 6cxl:M (3.586) BS02 MAN N/A N/A N/A 30834312
    2415 6d6u:E (3.92) BS01 MAN ? GO:0004888 ... P18507 29950725
    2416 6de7:D (4.123) BS01 MAN ? N/A P01857 29902444
    2417 6de7:G (4.123) BS01 MAN ? GO:0019031 ... Q2N0S6 29902444
    2418 6de7:L (4.123) BS01 MAN ? GO:0002250 ... P0DOY2 29902444
    2419 6de7:L (4.123) BS02 MAN ? GO:0002250 ... P0DOY2 29902444
    2420 6dfg:G (4.42) BS01 MAN N/A N/A N/A 31672916
    2421 6dfg:G (4.42) BS02 MAN N/A N/A N/A 31672916
    2422 6dfg:G (4.42) BS03 MAN N/A N/A N/A 31672916
    2423 6dfg:H (4.42) BS01 MAN N/A N/A N/A 31672916
    2424 6dfg:H (4.42) BS02 MAN N/A N/A N/A 31672916
    2425 6dfg:H (4.42) BS03 MAN N/A N/A N/A 31672916
    2426 6dfg:I (4.42) BS01 MAN N/A N/A N/A 31672916
    2427 6dfg:I (4.42) BS02 MAN N/A N/A N/A 31672916
    2428 6dfg:I (4.42) BS03 MAN N/A N/A N/A 31672916
    2429 6dfh:G (3.85) BS01 MAN N/A N/A N/A 31672916
    2430 6dfh:H (3.85) BS01 MAN N/A N/A N/A 31672916
    2431 6dfh:I (3.85) BS01 MAN N/A N/A N/A 31672916
    2432 6dru:A (2.7) BS02 MAN 3.2.1.177 GO:0003824 ... A2QTU5 32161692
    2433 6dru:A (2.7) BS03 MAN 3.2.1.177 GO:0003824 ... A2QTU5 32161692
    2434 6dru:A (2.7) BS04 MAN 3.2.1.177 GO:0003824 ... A2QTU5 32161692
    2435 6dru:A (2.7) BS07 MAN 3.2.1.177 GO:0003824 ... A2QTU5 32161692
    2436 6dru:A (2.7) BS08 MAN 3.2.1.177 GO:0003824 ... A2QTU5 32161692
    2437 6dru:B (2.7) BS01 MAN 3.2.1.177 GO:0003824 ... A2QTU5 32161692
    2438 6dru:B (2.7) BS02 MAN 3.2.1.177 GO:0003824 ... A2QTU5 32161692
    2439 6dru:B (2.7) BS03 MAN 3.2.1.177 GO:0003824 ... A2QTU5 32161692
    2440 6dru:B (2.7) BS04 MAN 3.2.1.177 GO:0003824 ... A2QTU5 32161692
    2441 6dw0:D (3.8) BS01 MAN ? GO:0004888 ... P18508 30044221
    2442 6dw1:D (3.1) BS01 MAN ? GO:0004888 ... P18508 30044221
    2443 6dzl:J (4.14) BS01 MAN N/A N/A N/A 30184505
    2444 6dzl:K (4.14) BS01 MAN N/A N/A N/A 30184505
    2445 6dzl:L (4.14) BS01 MAN N/A N/A N/A 30184505
    2446 6e5p:2 (8.8) BS01 MAN N/A N/A N/A 30471922
    2447 6e5p:2 (8.8) BS02 MAN N/A N/A N/A 30471922
    2448 6e5p:3 (8.8) BS01 MAN N/A N/A N/A 30471922
    2449 6e5p:3 (8.8) BS02 MAN N/A N/A N/A 30471922
    2450 6e5p:3 (8.8) BS03 MAN N/A N/A N/A 30471922
    2451 6e5p:H (8.8) BS01 MAN N/A N/A N/A 30471922
    2452 6e5p:H (8.8) BS02 MAN N/A N/A N/A 30471922
    2453 6e5p:H (8.8) BS03 MAN N/A N/A N/A 30471922
    2454 6e5p:M (8.8) BS01 MAN N/A N/A N/A 30471922
    2455 6e5p:M (8.8) BS02 MAN N/A N/A N/A 30471922
    2456 6e5p:R (8.8) BS01 MAN N/A N/A N/A 30471922
    2457 6e5p:R (8.8) BS02 MAN N/A N/A N/A 30471922
    2458 6e5p:S (8.8) BS01 MAN N/A N/A N/A 30471922
    2459 6e5p:S (8.8) BS02 MAN N/A N/A N/A 30471922
    2460 6e5p:S (8.8) BS03 MAN N/A N/A N/A 30471922
    2461 6e6b:A (4.52) BS16 MAN ? GO:0005509 ... Q91XX6 30971825
    2462 6e6b:A (4.52) BS17 MAN ? GO:0005509 ... Q91XX6 30971825
    2463 6ea4:A (2.45) BS01 MAN 3.4.11.- GO:0002250 ... Q6P179 N/A
    2464 6ea7:L (4.25) BS01 MAN N/A N/A N/A 30206174
    2465 6edu:D (4.06) BS01 MAN ? GO:0019031 ... B3UES2 30308160
    2466 6edu:E (4.06) BS01 MAN ? GO:0019031 ... B3UES2 30308160
    2467 6edu:F (4.06) BS01 MAN ? GO:0019031 ... B3UES2 30308160
    2468 6edu:P (4.06) BS01 MAN N/A N/A N/A 30308160
    2469 6edu:P (4.06) BS02 MAN N/A N/A N/A 30308160
    2470 6eet:A (3.23) BS01 MAN ? GO:0005509 ... Q99PJ1 32963095
    2471 6eet:A (3.23) BS02 MAN ? GO:0005509 ... Q99PJ1 32963095
    2472 6eet:A (3.23) BS03 MAN ? GO:0005509 ... Q99PJ1 32963095
    2473 6elc:A (1.41) BS02 MAN ? N/A B3GVK1 29988048
    2474 6en3:A (2.903) BS02 MAN 2.3.1.-
    3.4.22.-
    6.3.2.-
    N/A Q9KS12 29760474
    2475 6en3:A (2.903) BS03 MAN 2.3.1.-
    3.4.22.-
    6.3.2.-
    N/A Q9KS12 29760474
    2476 6eny:G (5.8) BS01 MAN ? GO:0000122 ... P27797 29107940
    2477 6eny:G (5.8) BS02 MAN ? GO:0000122 ... P27797 29107940
    2478 6eyo:A (3.7) BS01 MAN ? N/A P01854 30069035
    2479 6ezn:G (3.3) BS01 MAN 2.4.99.18 GO:0005789 ... P33767 36435935
    2480 6f5k:A (1.62) BS01 MAN 1.10.3.2 GO:0005507 ... G2QG31 30395580
    2481 6f9j:A (1.67) BS02 MAN 3.2.1.2 GO:0000272 ... A8CFR3 N/A
    2482 6fam:A (1.13) BS01 MAN ? GO:0004559 ... D6D1V7 29508463 PDBbind: -logKd/Ki=4.01, Kd=97.7uM
    2483 6far:A (1.3) BS01 MAN ? GO:0004559 ... D6D1V7 29508463
    2484 6fat:A (2.3) BS01 MAN 3.1.1.-
    3.1.1.73
    GO:0030600 ... A0A1D3S5H0 N/A
    2485 6fat:B (2.3) BS02 MAN 3.1.1.-
    3.1.1.73
    GO:0030600 ... A0A1D3S5H0 N/A
    2486 6fb3:A (2.38) BS01 MAN ? N/A Q9DER5 29540701
    2487 6fb3:B (2.38) BS01 MAN ? N/A Q9DER5 29540701
    2488 6fb3:C (2.38) BS01 MAN ? N/A Q9DER5 29540701
    2489 6fb3:D (2.38) BS01 MAN ? N/A Q9DER5 29540701
    2490 6fje:B (1.85) BS01 MAN ? GO:0004553 ... J7HDY4 31767902
    2491 6fkk:A (2.78) BS01 MAN ? GO:0030215 ... Q7KK54 31417095
    2492 6fly:A (2.749) BS01 MAN ? GO:0030246 ... Q53J09 30065388
    2493 6fly:A (2.749) BS02 MAN ? GO:0030246 ... Q53J09 30065388
    2494 6fly:B (2.749) BS01 MAN ? GO:0030246 ... Q53J09 30065388
    2495 6fly:B (2.749) BS02 MAN ? GO:0030246 ... Q53J09 30065388
    2496 6frv:A (2.3) BS01 MAN 3.2.1.3 GO:0000272 ... P69328 29717717
    2497 6frv:A (2.3) BS02 MAN 3.2.1.3 GO:0000272 ... P69328 29717717
    2498 6fwg:A (1.07) BS02 MAN ? GO:0004559 ... D6D1V7 32490192
    2499 6fwg:A (1.07) BS03 MAN ? GO:0004559 ... D6D1V7 32490192
    2500 6fwg:A (1.07) BS04 MAN ? GO:0004559 ... D6D1V7 32490192
    2501 6fwj:A (1.04) BS01 MAN ? GO:0004559 ... D6D1V7 32490192
    2502 6fwj:A (1.04) BS02 MAN ? GO:0004559 ... D6D1V7 32490192
    2503 6fwp:A (1.08) BS01 MAN ? GO:0004559 ... D6D1V7 32490192
    2504 6fwp:A (1.08) BS02 MAN ? GO:0004559 ... D6D1V7 32490192
    2505 6fwp:A (1.08) BS03 MAN ? GO:0004559 ... D6D1V7 32490192
    2506 6fwp:A (1.08) BS04 MAN ? GO:0004559 ... D6D1V7 32490192
    2507 6fwq:A (1.65) BS01 MAN ? GO:0004559 ... D6D1V7 32490192
    2508 6fwq:A (1.65) BS02 MAN ? GO:0004559 ... D6D1V7 32490192
    2509 6fwq:A (1.65) BS03 MAN ? GO:0004559 ... D6D1V7 32490192
    2510 6fwq:A (1.65) BS04 MAN ? GO:0004559 ... D6D1V7 32490192
    2511 6gsg:A (2.192) BS03 MAN ? GO:0004097 ... Q2UNF9 30204291
    2512 6gsz:A (1.38) BS01 MAN 3.2.1.40 GO:0005975 ... I0AZ41 30387766
    2513 6gsz:A (1.38) BS02 MAN 3.2.1.40 GO:0005975 ... I0AZ41 30387766
    2514 6gtv:A (2.1) BS02 MAN ? GO:0007155 ... A0A0R4I961 30543411
    2515 6gtv:C (2.1) BS02 MAN ? GO:0007155 ... A0A0R4I961 30543411
    2516 6gtv:C (2.1) BS03 MAN ? GO:0007155 ... A0A0R4I961 30543411
    2517 6gtw:A (2.5) BS01 MAN ? GO:0007155 ... A0A0R4I961 30543411
    2518 6gtw:B (2.5) BS01 MAN ? GO:0007155 ... A0A0R4I961 30543411
    2519 6gtw:C (2.5) BS01 MAN ? GO:0007155 ... A0A0R4I961 30543411
    2520 6gtw:C (2.5) BS02 MAN ? GO:0007155 ... A0A0R4I961 30543411
    2521 6gtw:D (2.5) BS01 MAN ? GO:0007155 ... A0A0R4I961 30543411
    2522 6gtx:A (2.5) BS01 MAN ? GO:0007155 ... P08191 30543411
    2523 6gtx:B (2.5) BS01 MAN ? GO:0007155 ... P08191 30543411
    2524 6gtx:C (2.5) BS01 MAN ? GO:0007155 ... P08191 30543411
    2525 6gtx:D (2.5) BS01 MAN ? GO:0007155 ... P08191 30543411
    2526 6gty:A (1.9) BS01 MAN ? GO:0007155 ... P08191 30543411
    2527 6gty:B (1.9) BS01 MAN ? GO:0007155 ... P08191 30543411
    2528 6gty:C (1.9) BS01 MAN ? GO:0007155 ... P08191 30543411
    2529 6gty:D (1.9) BS01 MAN ? GO:0007155 ... P08191 30543411
    2530 6gty:E (1.9) BS01 MAN ? GO:0007155 ... P08191 30543411
    2531 6gtz:A (1.719) BS03 MAN ? GO:0007155 ... A0A0R4I961 30543411
    2532 6gtz:C (1.719) BS03 MAN ? GO:0007155 ... A0A0R4I961 30543411
    2533 6gu0:A (2.501) BS03 MAN ? GO:0007155 ... A0A0R4I961 30543411
    2534 6h3t:A (2.836) BS01 MAN ? GO:0019048 ... H2AM12 30787296
    2535 6h3t:B (2.836) BS01 MAN ? GO:0019048 ... H2AM12 30787296
    2536 6h3u:A (3.168) BS01 MAN ? GO:0019048 ... H2AM12 30787296
    2537 6h3u:B (3.168) BS01 MAN ? GO:0019048 ... H2AM12 30787296
    2538 6h7y:A (1.81) BS01 MAN 3.4.17.21 GO:0004180 ... Q04609 30429952
    2539 6hfy:A (1.65) BS02 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2540 6hfy:A (1.65) BS03 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2541 6hfy:A (1.65) BS04 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2542 6hfy:B (1.65) BS02 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2543 6hfy:B (1.65) BS03 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2544 6hfy:B (1.65) BS04 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2545 6hfy:C (1.65) BS02 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2546 6hfy:C (1.65) BS03 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2547 6hfy:C (1.65) BS04 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2548 6hfy:D (1.65) BS02 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2549 6hfy:D (1.65) BS03 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2550 6hfy:D (1.65) BS04 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2551 6hg5:A (1.6) BS02 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2552 6hg5:A (1.6) BS03 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2553 6hg5:A (1.6) BS04 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2554 6hg5:B (1.6) BS02 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2555 6hg5:B (1.6) BS03 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2556 6hg5:B (1.6) BS04 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2557 6hg5:C (1.6) BS02 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2558 6hg5:C (1.6) BS03 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2559 6hg5:C (1.6) BS04 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2560 6hg5:D (1.6) BS02 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2561 6hg5:D (1.6) BS03 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2562 6hg5:D (1.6) BS04 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2563 6hgb:A (1.5) BS02 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2564 6hgb:A (1.5) BS03 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2565 6hgb:A (1.5) BS04 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2566 6hgb:B (1.5) BS02 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2567 6hgb:B (1.5) BS03 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2568 6hgb:B (1.5) BS04 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2569 6hgb:C (1.5) BS02 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2570 6hgb:C (1.5) BS03 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2571 6hgb:D (1.5) BS02 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2572 6hgb:D (1.5) BS03 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2573 6hgb:D (1.5) BS04 MAN 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    2574 6hmh:A (1.03) BS01 MAN ? GO:0004559 ... D6D1V7 30427198
    2575 6hmh:A (1.03) BS02 MAN ? GO:0004559 ... D6D1V7 30427198
    2576 6hug:C (3.1) BS01 MAN ? GO:0004888 ... P18507 30602790
    2577 6hug:C (3.1) BS02 MAN ? GO:0004888 ... P18507 30602790
    2578 6i01:A (2.1) BS06 MAN 5.1.3.17 GO:0015012 ... O94923 30872481
    2579 6i01:B (2.1) BS05 MAN 5.1.3.17 GO:0015012 ... O94923 30872481
    2580 6i2k:B (3.4) BS01 MAN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... Q66479 30531980
    2581 6iaa:A (3.6) BS01 MAN ? GO:0007155 ... Q9HCK4 30853216
    2582 6iaa:B (3.6) BS01 MAN ? GO:0007155 ... Q9HCK4 30853216
    2583 6ieq:D (3.9) BS02 MAN N/A N/A N/A 31142746
    2584 6ieq:D (3.9) BS03 MAN N/A N/A N/A 31142746
    2585 6ieq:H (3.9) BS01 MAN N/A N/A N/A 31142746
    2586 6ieq:L (3.9) BS01 MAN N/A N/A N/A 31142746
    2587 6ieq:L (3.9) BS02 MAN N/A N/A N/A 31142746
    2588 6j11:A (3.0) BS01 MAN ? N/A K9N5Q8 31296843
    2589 6j11:B (3.0) BS01 MAN ? N/A K9N5Q8 31296843
    2590 6j11:C (3.0) BS01 MAN ? N/A K9N5Q8 31296843
    2591 6j11:F (3.0) BS01 MAN N/A N/A N/A 31296843
    2592 6jbs:A (2.4) BS01 MAN 3.2.1.21 GO:0004553 ... G8GLP2 31925310
    2593 6jbs:A (2.4) BS02 MAN 3.2.1.21 GO:0004553 ... G8GLP2 31925310
    2594 6jbs:D (2.4) BS01 MAN 3.2.1.21 GO:0004553 ... G8GLP2 31925310
    2595 6jbs:D (2.4) BS02 MAN 3.2.1.21 GO:0004553 ... G8GLP2 31925310
    2596 6jbs:D (2.4) BS03 MAN 3.2.1.21 GO:0004553 ... G8GLP2 31925310
    2597 6jjp:D (2.9) BS01 MAN N/A N/A N/A 31667366
    2598 6jk8:A (5.0) BS03 MAN 2.7.10.1 GO:0004672 ... P08069 32275863
    2599 6jxg:A (1.9) BS01 MAN 3.2.1.21 GO:0000272 ... A0A068FT77 31700541
    2600 6k1h:B (3.52) BS01 MAN ? GO:0005886 ... P69801 31209249

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417