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BioLiP
Download all results in tab-seperated text for 4535 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2201 5tkf:A (2.1) BS02 MAN 1.14.99.56 GO:0004497 ... Q1K8B6 28177316
    2202 5tkf:C (2.1) BS01 MAN 1.14.99.56 GO:0004497 ... Q1K8B6 28177316
    2203 5u38:A (1.6) BS02 MAN ? GO:0030246 ... G1EUI6 28867234
    2204 5u7m:D (3.025) BS02 MAN N/A N/A N/A 28825711
    2205 5u7m:G (3.025) BS01 MAN ? GO:0019031 ... Q2N0S5 28825711
    2206 5u7m:L (3.025) BS01 MAN N/A N/A N/A 28825711
    2207 5u7o:D (3.031) BS02 MAN N/A N/A N/A 28825711
    2208 5u7o:L (3.031) BS01 MAN N/A N/A N/A 28825711
    2209 5u81:A (1.4) BS02 MAN 3.5.1.23 GO:0005576 ... G5AP74 29692406
    2210 5u81:A (1.4) BS03 MAN 3.5.1.23 GO:0005576 ... G5AP74 29692406
    2211 5udc:H (3.45) BS02 MAN N/A N/A N/A 28469033
    2212 5uem:G (2.7) BS01 MAN ? GO:0019031 ... A0A0M3KKW9 28100831
    2213 5um8:L (3.935) BS01 MAN N/A N/A N/A 28514686
    2214 5um8:L (3.935) BS02 MAN N/A N/A N/A 28514686
    2215 5utf:G (3.503) BS01 MAN ? GO:0019031 ... Q2N0S6 28275193
    2216 5utf:L (3.503) BS01 MAN N/A N/A N/A 28275193
    2217 5uty:D (3.412) BS01 MAN N/A N/A N/A 28275193
    2218 5uty:D (3.412) BS02 MAN N/A N/A N/A 28275193
    2219 5uty:H (3.412) BS01 MAN N/A N/A N/A 28275193
    2220 5uty:L (3.412) BS01 MAN N/A N/A N/A 28275193
    2221 5v5x:A (3.5) BS10 MAN ? GO:0005509 ... Q91XX3 29087338
    2222 5v5x:A (3.5) BS11 MAN ? GO:0005509 ... Q91XX3 29087338
    2223 5v5x:A (3.5) BS12 MAN ? GO:0005509 ... Q91XX3 29087338
    2224 5v5x:B (3.5) BS10 MAN ? GO:0005509 ... Q91XX3 29087338
    2225 5v5x:B (3.5) BS11 MAN ? GO:0005509 ... Q91XX3 29087338
    2226 5v5x:B (3.5) BS12 MAN ? GO:0005509 ... Q91XX3 29087338
    2227 5v5x:C (3.5) BS10 MAN ? GO:0005509 ... Q91XX3 29087338
    2228 5v5x:C (3.5) BS11 MAN ? GO:0005509 ... Q91XX3 29087338
    2229 5v5x:D (3.5) BS10 MAN ? GO:0005509 ... Q91XX3 29087338
    2230 5v5x:D (3.5) BS11 MAN ? GO:0005509 ... Q91XX3 29087338
    2231 5v5x:D (3.5) BS12 MAN ? GO:0005509 ... Q91XX3 29087338
    2232 5v6f:A (1.5) BS02 MAN ? N/A Q9KTH2 29432487
    2233 5v6f:A (1.5) BS03 MAN ? N/A Q9KTH2 29432487
    2234 5v6k:A (1.8) BS01 MAN ? N/A Q9KTH2 29432487
    2235 5v7j:D (2.907) BS01 MAN N/A N/A N/A 28445724
    2236 5v7j:D (2.907) BS02 MAN N/A N/A N/A 28445724
    2237 5v7j:G (2.907) BS01 MAN ? GO:0019031 ... Q2N0S6 28445724
    2238 5v7j:G (2.907) BS02 MAN ? GO:0019031 ... Q2N0S6 28445724
    2239 5v7j:L (2.907) BS01 MAN N/A N/A N/A 28445724
    2240 5v7j:L (2.907) BS02 MAN N/A N/A N/A 28445724
    2241 5v7j:L (2.907) BS03 MAN N/A N/A N/A 28445724
    2242 5v8l:J (4.3) BS02 MAN N/A N/A N/A 28423342
    2243 5v8l:K (4.3) BS01 MAN N/A N/A N/A 28423342
    2244 5v8l:L (4.3) BS01 MAN N/A N/A N/A 28423342
    2245 5v8m:L (4.4) BS01 MAN N/A N/A N/A 28423342
    2246 5v8m:T (4.4) BS01 MAN N/A N/A N/A 28423342
    2247 5v8m:U (4.4) BS01 MAN N/A N/A N/A 28423342
    2248 5vcs:A (2.799) BS02 MAN 2.4.1.143 GO:0000139 ... Q10469 29666272
    2249 5vcs:B (2.799) BS02 MAN 2.4.1.143 GO:0000139 ... Q10469 29666272
    2250 5vgj:H (3.456) BS01 MAN N/A N/A N/A 28514685
    2251 5viy:H (6.2) BS01 MAN ? N/A S6B291 28548638
    2252 5viy:H (6.2) BS02 MAN ? N/A S6B291 28548638
    2253 5viy:I (6.2) BS01 MAN ? GO:0002250 ... P01834 28548638
    2254 5viy:J (6.2) BS01 MAN ? N/A S6B291 28548638
    2255 5viy:K (6.2) BS01 MAN ? N/A S6B291 28548638
    2256 5viy:O (6.2) BS01 MAN ? N/A S6B291 28548638
    2257 5vk2:A (3.201) BS01 MAN ? GO:0019031 ... P08669 28572385
    2258 5vk2:B (3.201) BS01 MAN ? GO:0019031 ... P08669 28572385
    2259 5vk2:C (3.201) BS01 MAN ? GO:0019031 ... P08669 28572385
    2260 5vn3:G (3.7) BS01 MAN ? GO:0019031 ... B3UES2 28700571
    2261 5vn3:I (3.7) BS01 MAN ? GO:0019031 ... B3UES2 28700571
    2262 5vn3:J (3.7) BS01 MAN ? GO:0019031 ... B3UES2 28700571
    2263 5vyb:A (2.4) BS01 MAN ? N/A Q6EIG7 28652405
    2264 5w6d:L (3.202) BS01 MAN N/A N/A N/A 28847869
    2265 5w6d:L (3.202) BS02 MAN N/A N/A N/A 28847869
    2266 5wav:B (2.6) BS01 MAN ? N/A P0DOX5 N/A
    2267 5wdj:B (2.4) BS04 MAN 1.11.2.2 GO:0004601 ... P05164 30108726
    2268 5wdj:E (2.4) BS03 MAN 1.11.2.2 GO:0004601 ... P05164 30108726
    2269 5wdu:H (7.0) BS01 MAN N/A N/A N/A 28834745
    2270 5wdu:K (7.0) BS01 MAN N/A N/A N/A 28834745
    2271 5wdu:N (7.0) BS01 MAN N/A N/A N/A 28834745
    2272 5wey:A (1.8) BS01 MAN ? N/A P02866 28846383
    2273 5wyx:A (2.4) BS01 MAN ? GO:0002224 ... Q9NR97 29155428
    2274 5wzy:A (2.799) BS01 MAN ? GO:0001614 ... F8W463 28332633
    2275 5x35:A (-1.00) BS01 MAN 3.2.1.91 GO:0005576 ... P62694 28494147
    2276 5x36:A (-1.00) BS01 MAN 3.2.1.91 GO:0005576 ... P62694 28494147
    2277 5x37:A (-1.00) BS01 MAN 3.2.1.91 GO:0005576 ... P62694 28494147
    2278 5x39:A (-1.00) BS01 MAN 3.2.1.91 GO:0005576 ... P62694 28494147
    2279 5x3c:A (-1.00) BS01 MAN 3.2.1.91 GO:0005576 ... P62694 28494147
    2280 5xfh:A (1.903) BS01 MAN ? GO:0030246 ... Q0JMY8 28973127
    2281 5xfi:A (1.653) BS01 MAN ? GO:0005536 ... P93114 28973127
    2282 5xfi:B (1.653) BS01 MAN ? GO:0005536 ... P93114 28973127
    2283 5z5n:B (2.04) BS03 MAN ? GO:0030246 ... P02866 N/A
    2284 5zac:C (2.59) BS03 MAN ? GO:0030246 ... P02866 N/A
    2285 5zac:D (2.59) BS04 MAN ? GO:0030246 ... P02866 N/A
    2286 6b0n:L (3.4) BS01 MAN N/A N/A N/A 29769533
    2287 6b3d:H (2.271) BS01 MAN N/A N/A N/A 29150603
    2288 6b3d:H (2.271) BS02 MAN N/A N/A N/A 29150603
    2289 6b3d:L (2.271) BS01 MAN N/A N/A N/A 29150603
    2290 6b3m:C (3.92) BS01 MAN N/A N/A N/A 29899095
    2291 6b3m:C (3.92) BS02 MAN N/A N/A N/A 29899095
    2292 6b3m:I (3.92) BS01 MAN N/A N/A N/A 29899095
    2293 6b3m:M (3.92) BS01 MAN N/A N/A N/A 29899095
    2294 6b3m:Y (3.92) BS01 MAN N/A N/A N/A 29899095
    2295 6b9o:A (1.841) BS02 MAN 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    2296 6b9o:A (1.841) BS03 MAN 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    2297 6b9o:A (1.841) BS04 MAN 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    2298 6b9o:A (1.841) BS05 MAN 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    2299 6b9o:A (1.841) BS06 MAN 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    2300 6b9o:B (1.841) BS01 MAN 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    2301 6b9o:B (1.841) BS03 MAN 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    2302 6b9o:B (1.841) BS04 MAN 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    2303 6b9o:B (1.841) BS05 MAN 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    2304 6b9o:B (1.841) BS06 MAN 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    2305 6b9o:B (1.841) BS07 MAN 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    2306 6b9o:B (1.841) BS08 MAN 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    2307 6b9p:A (1.996) BS02 MAN 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    2308 6b9p:A (1.996) BS03 MAN 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    2309 6b9p:A (1.996) BS04 MAN 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    2310 6b9p:A (1.996) BS05 MAN 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    2311 6b9p:A (1.996) BS06 MAN 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    2312 6b9p:B (1.996) BS01 MAN 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    2313 6b9p:B (1.996) BS03 MAN 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    2314 6b9p:B (1.996) BS04 MAN 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    2315 6b9p:B (1.996) BS05 MAN 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    2316 6b9p:B (1.996) BS06 MAN 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    2317 6b9p:B (1.996) BS07 MAN 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    2318 6b9p:B (1.996) BS08 MAN 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    2319 6be6:B (2.8) BS01 MAN 3.4.24.81 GO:0004222 ... O14672 29224781
    2320 6bf4:B (2.382) BS01 MAN N/A N/A N/A 29548671
    2321 6bf4:B (2.382) BS02 MAN N/A N/A N/A 29548671
    2322 6bf4:B (2.382) BS03 MAN N/A N/A N/A 29548671
    2323 6bf4:B (2.382) BS04 MAN N/A N/A N/A 29548671
    2324 6bf4:C (2.382) BS01 MAN N/A N/A N/A 29548671
    2325 6bf4:C (2.382) BS02 MAN N/A N/A N/A 29548671
    2326 6bf4:G (2.382) BS01 MAN ? GO:0019031 ... D7S2G1 29548671
    2327 6bf4:H (2.382) BS01 MAN N/A N/A N/A 29548671
    2328 6bf4:H (2.382) BS02 MAN N/A N/A N/A 29548671
    2329 6bf4:H (2.382) BS03 MAN N/A N/A N/A 29548671
    2330 6bf4:H (2.382) BS04 MAN N/A N/A N/A 29548671
    2331 6bf4:L (2.382) BS01 MAN N/A N/A N/A 29548671
    2332 6bf4:L (2.382) BS02 MAN N/A N/A N/A 29548671
    2333 6c10:A (1.399) BS01 MAN ? GO:0005509 ... Q99PJ1 30070639
    2334 6cbj:H (2.85) BS01 MAN ? N/A S6C4S0 29549260
    2335 6cbj:H (2.85) BS02 MAN ? N/A S6C4S0 29549260
    2336 6cbj:L (2.85) BS01 MAN ? GO:0005576 ... Q6PJG0 29549260
    2337 6cbj:L (2.85) BS02 MAN ? GO:0005576 ... Q6PJG0 29549260
    2338 6cbp:A (2.17) BS01 MAN N/A N/A N/A 29549260
    2339 6cbp:A (2.17) BS02 MAN N/A N/A N/A 29549260
    2340 6cbp:A (2.17) BS03 MAN N/A N/A N/A 29549260
    2341 6ccb:E (6.5) BS01 MAN N/A N/A N/A 29618644
    2342 6ccb:E (6.5) BS02 MAN N/A N/A N/A 29618644
    2343 6ccb:L (6.5) BS01 MAN N/A N/A N/A 29618644
    2344 6cde:8 (3.8) BS01 MAN N/A N/A N/A 29867235
    2345 6cde:N (3.8) BS01 MAN N/A N/A N/A 29867235
    2346 6cde:n (3.8) BS01 MAN N/A N/A N/A 29867235
    2347 6cdi:3 (3.6) BS01 MAN N/A N/A N/A 29867235
    2348 6cdi:6 (3.6) BS01 MAN N/A N/A N/A 29867235
    2349 6cdi:H (3.6) BS01 MAN N/A N/A N/A 29867235
    2350 6cdi:N (3.6) BS01 MAN N/A N/A N/A 29867235
    2351 6cdi:h (3.6) BS01 MAN N/A N/A N/A 29867235
    2352 6cdi:n (3.6) BS01 MAN N/A N/A N/A 29867235
    2353 6ce0:D (4.602) BS02 MAN N/A N/A N/A 30474059
    2354 6ce0:D (4.602) BS03 MAN N/A N/A N/A 30474059
    2355 6ch7:D (3.8) BS01 MAN N/A N/A N/A 29593217
    2356 6ch7:Q (3.8) BS01 MAN N/A N/A N/A 29593217
    2357 6ch7:Q (3.8) BS02 MAN N/A N/A N/A 29593217
    2358 6ch7:R (3.8) BS01 MAN N/A N/A N/A 29593217
    2359 6ch8:D (4.1) BS01 MAN N/A N/A N/A 29593217
    2360 6ch8:G (4.1) BS01 MAN ? GO:0019031 ... Q2N0S6 29593217
    2361 6ch8:Q (4.1) BS01 MAN N/A N/A N/A 29593217
    2362 6ch8:R (4.1) BS01 MAN N/A N/A N/A 29593217
    2363 6ch9:D (4.85) BS01 MAN N/A N/A N/A 29593217
    2364 6ch9:G (4.85) BS01 MAN ? GO:0019031 ... B3UES2 29593217
    2365 6ch9:Q (4.85) BS01 MAN N/A N/A N/A 29593217
    2366 6ch9:R (4.85) BS01 MAN N/A N/A N/A 29593217
    2367 6ck9:D (2.714) BS01 MAN N/A N/A N/A 29642014
    2368 6ck9:D (2.714) BS02 MAN N/A N/A N/A 29642014
    2369 6ck9:H (2.714) BS01 MAN N/A N/A N/A 29642014
    2370 6ck9:L (2.714) BS01 MAN N/A N/A N/A 29642014
    2371 6ck9:L (2.714) BS02 MAN N/A N/A N/A 29642014
    2372 6ck9:L (2.714) BS03 MAN N/A N/A N/A 29642014
    2373 6cm3:D (3.54) BS01 MAN ? GO:0019031 ... Q2N0S5 30308160
    2374 6cm3:E (3.54) BS01 MAN ? GO:0019031 ... Q2N0S5 30308160
    2375 6cm3:F (3.54) BS01 MAN ? GO:0019031 ... Q2N0S5 30308160
    2376 6cm3:P (3.54) BS02 MAN N/A N/A N/A 30308160
    2377 6cm3:P (3.54) BS03 MAN N/A N/A N/A 30308160
    2378 6cm3:P (3.54) BS04 MAN N/A N/A N/A 30308160
    2379 6cm3:R (3.54) BS02 MAN N/A N/A N/A 30308160
    2380 6cm3:R (3.54) BS03 MAN N/A N/A N/A 30308160
    2381 6cm3:R (3.54) BS04 MAN N/A N/A N/A 30308160
    2382 6cm3:T (3.54) BS02 MAN N/A N/A N/A 30308160
    2383 6cm3:T (3.54) BS03 MAN N/A N/A N/A 30308160
    2384 6cm3:T (3.54) BS04 MAN N/A N/A N/A 30308160
    2385 6crd:A (2.57) BS01 MAN 3.2.1.18 GO:0004308 ... P03472
    Q54436
    30713159
    2386 6crd:A (2.57) BS02 MAN 3.2.1.18 GO:0004308 ... P03472
    Q54436
    30713159
    2387 6crd:A (2.57) BS03 MAN 3.2.1.18 GO:0004308 ... P03472
    Q54436
    30713159
    2388 6crd:B (2.57) BS02 MAN 3.2.1.18 GO:0004308 ... P03472
    Q54436
    30713159
    2389 6crd:B (2.57) BS03 MAN 3.2.1.18 GO:0004308 ... P03472
    Q54436
    30713159
    2390 6crd:C (2.57) BS01 MAN 3.2.1.18 GO:0004308 ... P03472
    Q54436
    30713159
    2391 6crd:C (2.57) BS02 MAN 3.2.1.18 GO:0004308 ... P03472
    Q54436
    30713159
    2392 6crd:D (2.57) BS01 MAN 3.2.1.18 GO:0004308 ... P03472
    Q54436
    30713159
    2393 6crd:E (2.57) BS02 MAN 3.2.1.18 GO:0004308 ... P03472
    Q54436
    30713159
    2394 6crd:E (2.57) BS03 MAN 3.2.1.18 GO:0004308 ... P03472
    Q54436
    30713159
    2395 6crd:F (2.57) BS02 MAN 3.2.1.18 GO:0004308 ... P03472
    Q54436
    30713159
    2396 6crd:F (2.57) BS03 MAN 3.2.1.18 GO:0004308 ... P03472
    Q54436
    30713159
    2397 6crd:G (2.57) BS01 MAN 3.2.1.18 GO:0004308 ... P03472
    Q54436
    30713159
    2398 6crd:H (2.57) BS02 MAN 3.2.1.18 GO:0004308 ... P03472
    Q54436
    30713159
    2399 6cue:6 (4.0) BS01 MAN N/A N/A N/A 29975771
    2400 6cue:N (4.0) BS01 MAN N/A N/A N/A 29975771

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417