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BioLiP
Download all results in tab-seperated text for 4535 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2001 5m7y:A (1.55) BS01 MAN ? GO:0005975 ... Q8XNB2 28026180
    2002 5m7y:A (1.55) BS02 MAN ? GO:0005975 ... Q8XNB2 28026180
    2003 5m8l:C (2.35) BS01 MAN 1.14.18.- GO:0016491 ... P17643 28661582
    2004 5m8o:B (2.5) BS01 MAN 1.14.18.- GO:0016491 ... P17643 28661582
    2005 5m8o:C (2.5) BS01 MAN 1.14.18.- GO:0016491 ... P17643 28661582
    2006 5mc8:A (1.18) BS02 MAN ? GO:0004559 ... D6D1V7 27992199
    2007 5mc8:A (1.18) BS03 MAN ? GO:0004559 ... D6D1V7 27992199
    2008 5mc8:A (1.18) BS04 MAN ? GO:0004559 ... D6D1V7 27992199
    2009 5mfa:A (1.2) BS01 MAN 1.11.2.2 GO:0001878 ... P05164 28348079
    2010 5mgc:A (2.3) BS01 MAN 3.2.1.23 GO:0004553 ... A2QAN3 28391618
    2011 5mgc:A (2.3) BS02 MAN 3.2.1.23 GO:0004553 ... A2QAN3 28391618
    2012 5mgc:A (2.3) BS03 MAN 3.2.1.23 GO:0004553 ... A2QAN3 28391618
    2013 5mgc:A (2.3) BS04 MAN 3.2.1.23 GO:0004553 ... A2QAN3 28391618
    2014 5mgd:A (2.15) BS01 MAN 3.2.1.23 GO:0004553 ... A2QAN3 28391618
    2015 5mgd:A (2.15) BS02 MAN 3.2.1.23 GO:0004553 ... A2QAN3 28391618
    2016 5mgd:A (2.15) BS03 MAN 3.2.1.23 GO:0004553 ... A2QAN3 28391618
    2017 5mgd:A (2.15) BS04 MAN 3.2.1.23 GO:0004553 ... A2QAN3 28391618
    2018 5mhp:A (2.43) BS01 MAN 3.1.4.39 GO:0003676 ... Q13822 28414242
    2019 5mhp:A (2.43) BS02 MAN 3.1.4.39 GO:0003676 ... Q13822 28414242
    2020 5moi:B (2.2) BS01 MAN ? N/A P01854 28844738
    2021 5moi:D (2.2) BS01 MAN ? N/A P01854 28844738
    2022 5mok:D (2.0) BS01 MAN ? N/A P01854 28844738
    2023 5mol:A (1.75) BS01 MAN ? N/A P01854 28844738
    2024 5mol:B (1.75) BS01 MAN ? N/A P01854 28844738
    2025 5mzv:A (2.8) BS01 MAN ? GO:0004896 ... P29460 29287995
    2026 5n0a:L (3.9) BS01 MAN N/A N/A N/A 28534525
    2027 5nbs:A (2.25) BS01 MAN 3.2.1.21 GO:0000272 ... Q7RWP2 30511673
    2028 5nbs:A (2.25) BS03 MAN 3.2.1.21 GO:0000272 ... Q7RWP2 30511673
    2029 5nbs:A (2.25) BS04 MAN 3.2.1.21 GO:0000272 ... Q7RWP2 30511673
    2030 5nbs:A (2.25) BS05 MAN 3.2.1.21 GO:0000272 ... Q7RWP2 30511673
    2031 5nbs:A (2.25) BS06 MAN 3.2.1.21 GO:0000272 ... Q7RWP2 30511673
    2032 5nbs:A (2.25) BS07 MAN 3.2.1.21 GO:0000272 ... Q7RWP2 30511673
    2033 5nbs:A (2.25) BS08 MAN 3.2.1.21 GO:0000272 ... Q7RWP2 30511673
    2034 5nbs:B (2.25) BS01 MAN 3.2.1.21 GO:0000272 ... Q7RWP2 30511673
    2035 5nbs:B (2.25) BS02 MAN 3.2.1.21 GO:0000272 ... Q7RWP2 30511673
    2036 5nbs:B (2.25) BS03 MAN 3.2.1.21 GO:0000272 ... Q7RWP2 30511673
    2037 5nbs:B (2.25) BS04 MAN 3.2.1.21 GO:0000272 ... Q7RWP2 30511673
    2038 5nbs:B (2.25) BS05 MAN 3.2.1.21 GO:0000272 ... Q7RWP2 30511673
    2039 5nbs:B (2.25) BS06 MAN 3.2.1.21 GO:0000272 ... Q7RWP2 30511673
    2040 5nbs:B (2.25) BS07 MAN 3.2.1.21 GO:0000272 ... Q7RWP2 30511673
    2041 5nem:2 (10.8) BS01 MAN 3.4.22.46
    3.6.1.15
    GO:0005198 ... Q6ZZ87 28534487
    2042 5nem:3 (10.8) BS01 MAN 3.4.22.46
    3.6.1.15
    GO:0005198 ... Q6ZZ87 28534487
    2043 5nfg:A (2.375) BS01 MAN 3.4.23.- GO:0004190 ... Q9XFX4 28770303
    2044 5nqw:A (3.4) BS01 MAN ? N/A P01854 29295972
    2045 5o2w:A (2.0) BS01 MAN 3.2.1.4 N/A G0R6T8 28900033
    2046 5o2w:A (2.0) BS02 MAN 3.2.1.4 N/A G0R6T8 28900033
    2047 5o2w:A (2.0) BS03 MAN 3.2.1.4 N/A G0R6T8 28900033
    2048 5o2w:A (2.0) BS04 MAN 3.2.1.4 N/A G0R6T8 28900033
    2049 5o2w:A (2.0) BS05 MAN 3.2.1.4 N/A G0R6T8 28900033
    2050 5o2w:A (2.0) BS06 MAN 3.2.1.4 N/A G0R6T8 28900033
    2051 5o2w:A (2.0) BS07 MAN 3.2.1.4 N/A G0R6T8 28900033
    2052 5o2w:A (2.0) BS08 MAN 3.2.1.4 N/A G0R6T8 28900033
    2053 5o2w:A (2.0) BS09 MAN 3.2.1.4 N/A G0R6T8 28900033
    2054 5o2x:A (0.95) BS01 MAN 3.2.1.4 N/A G0R6T8 28900033
    2055 5o2x:A (0.95) BS02 MAN 3.2.1.4 N/A G0R6T8 28900033
    2056 5o2x:A (0.95) BS03 MAN 3.2.1.4 N/A G0R6T8 28900033
    2057 5o2x:A (0.95) BS04 MAN 3.2.1.4 N/A G0R6T8 28900033
    2058 5o2x:A (0.95) BS05 MAN 3.2.1.4 N/A G0R6T8 28900033
    2059 5o2x:A (0.95) BS06 MAN 3.2.1.4 N/A G0R6T8 28900033
    2060 5o2x:A (0.95) BS07 MAN 3.2.1.4 N/A G0R6T8 28900033
    2061 5o2x:A (0.95) BS08 MAN 3.2.1.4 N/A G0R6T8 28900033
    2062 5o2x:A (0.95) BS09 MAN 3.2.1.4 N/A G0R6T8 28900033
    2063 5o2x:A (0.95) BS10 MAN 3.2.1.4 N/A G0R6T8 28900033
    2064 5o47:B (1.91) BS01 MAN ? GO:0004553 ... J7HDY4 N/A
    2065 5oar:A (2.3) BS01 MAN 3.2.1.52 N/A Q8J2T0 29239122
    2066 5oar:C (2.3) BS01 MAN 3.2.1.52 N/A Q8J2T0 29239122
    2067 5of0:A (1.48) BS01 MAN 3.4.17.21 GO:0004180 ... Q04609 30429952
    2068 5ohi:A (1.66) BS01 MAN 3.1.4.39 GO:0003676 ... Q9R1E6 29259743
    2069 5ohi:A (1.66) BS02 MAN 3.1.4.39 GO:0003676 ... Q9R1E6 29259743
    2070 5olb:A (1.82) BS01 MAN 3.1.4.39 GO:0003676 ... Q9R1E6 29259743
    2071 5or3:A (1.795) BS03 MAN ? GO:0004097 ... Q2UNF9 29715329
    2072 5or3:B (1.795) BS01 MAN ? GO:0004097 ... Q2UNF9 29715329
    2073 5or3:B (1.795) BS04 MAN ? GO:0004097 ... Q2UNF9 29715329
    2074 5or3:D (1.795) BS03 MAN ? GO:0004097 ... Q2UNF9 29715329
    2075 5or4:B (2.445) BS03 MAN ? GO:0004097 ... Q2UNF9 29715329
    2076 5or4:D (2.445) BS03 MAN ? GO:0004097 ... Q2UNF9 29715329
    2077 5qj2:B (2.82) BS04 MAN 1.11.2.2 GO:0004601 ... P05164 30613322
    2078 5qj2:E (2.82) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 30613322
    2079 5qj2:G (2.82) BS03 MAN 1.11.2.2 GO:0004601 ... P05164 30613322
    2080 5qj2:I (2.82) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 30613322
    2081 5qj3:B (2.76) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 30613322
    2082 5s9l:A (1.9) BS01 MAN 3.1.4.39 GO:0001953 ... Q64610 N/A
    2083 5s9m:A (1.8) BS01 MAN 3.1.4.39 GO:0001953 ... Q64610 N/A
    2084 5s9n:A (1.8) BS01 MAN 3.1.4.39 GO:0001953 ... Q64610 N/A
    2085 5s9n:A (1.8) BS02 MAN 3.1.4.39 GO:0001953 ... Q64610 N/A
    2086 5swb:A (1.73) BS02 MAN N/A N/A N/A 28056108
    2087 5swb:A (1.73) BS03 MAN N/A N/A N/A 28056108
    2088 5swb:A (1.73) BS04 MAN N/A N/A N/A 28056108
    2089 5swb:A (1.73) BS05 MAN N/A N/A N/A 28056108
    2090 5swb:C (1.73) BS02 MAN N/A N/A N/A 28056108
    2091 5swb:C (1.73) BS03 MAN N/A N/A N/A 28056108
    2092 5swb:C (1.73) BS04 MAN N/A N/A N/A 28056108
    2093 5swb:C (1.73) BS05 MAN N/A N/A N/A 28056108
    2094 5swb:D (1.73) BS02 MAN N/A N/A N/A 28056108
    2095 5swb:D (1.73) BS03 MAN N/A N/A N/A 28056108
    2096 5swb:D (1.73) BS04 MAN N/A N/A N/A 28056108
    2097 5swb:D (1.73) BS05 MAN N/A N/A N/A 28056108
    2098 5swb:G (1.73) BS02 MAN N/A N/A N/A 28056108
    2099 5swb:G (1.73) BS03 MAN N/A N/A N/A 28056108
    2100 5swb:G (1.73) BS04 MAN N/A N/A N/A 28056108
    2101 5swb:G (1.73) BS05 MAN N/A N/A N/A 28056108
    2102 5szl:A (4.2) BS01 MAN ? GO:0005509 ... Q91XZ0 27782885
    2103 5szl:A (4.2) BS02 MAN ? GO:0005509 ... Q91XZ0 27782885
    2104 5szl:B (4.2) BS01 MAN ? GO:0005509 ... Q91XZ0 27782885
    2105 5szl:B (4.2) BS02 MAN ? GO:0005509 ... Q91XZ0 27782885
    2106 5szl:C (4.2) BS01 MAN ? GO:0005509 ... Q91XZ0 27782885
    2107 5szl:D (4.2) BS01 MAN ? GO:0005509 ... Q91XZ0 27782885
    2108 5szm:A (3.6) BS10 MAN ? GO:0005509 ... Q91XY0 27782885
    2109 5szn:A (2.944) BS01 MAN ? GO:0005509 ... Q91XX9 27782885
    2110 5szn:A (2.944) BS02 MAN ? GO:0005509 ... Q91XX9 27782885
    2111 5szo:A (3.612) BS01 MAN ? GO:0005509 ... Q91XX3 27782885
    2112 5szp:A (3.1) BS10 MAN ? GO:0005509 ... Q91XX3 27782885
    2113 5szp:A (3.1) BS11 MAN ? GO:0005509 ... Q91XX3 27782885
    2114 5szp:A (3.1) BS12 MAN ? GO:0005509 ... Q91XX3 27782885
    2115 5szp:B (3.1) BS10 MAN ? GO:0005509 ... Q91XX3 27782885
    2116 5szp:B (3.1) BS11 MAN ? GO:0005509 ... Q91XX3 27782885
    2117 5szq:A (2.608) BS01 MAN ? GO:0005509 ... Q91XY4 27782885
    2118 5szq:A (2.608) BS02 MAN ? GO:0005509 ... Q91XY4 27782885
    2119 5szq:A (2.608) BS03 MAN ? GO:0005509 ... Q91XY4 27782885
    2120 5szq:A (2.608) BS04 MAN ? GO:0005509 ... Q91XY4 27782885
    2121 5szr:A (2.3) BS10 MAN ? GO:0005509 ... Q91XX7 27782885
    2122 5szr:A (2.3) BS11 MAN ? GO:0005509 ... Q91XX7 27782885
    2123 5szr:A (2.3) BS12 MAN ? GO:0005509 ... Q91XX7 27782885
    2124 5szr:A (2.3) BS13 MAN ? GO:0005509 ... Q91XX7 27782885
    2125 5szr:B (2.3) BS10 MAN ? GO:0005509 ... Q91XX7 27782885
    2126 5szr:B (2.3) BS11 MAN ? GO:0005509 ... Q91XX7 27782885
    2127 5szr:B (2.3) BS12 MAN ? GO:0005509 ... Q91XX7 27782885
    2128 5szr:B (2.3) BS13 MAN ? GO:0005509 ... Q91XX7 27782885
    2129 5szr:B (2.3) BS14 MAN ? GO:0005509 ... Q91XX7 27782885
    2130 5szr:C (2.3) BS10 MAN ? GO:0005509 ... Q91XX7 27782885
    2131 5szr:C (2.3) BS11 MAN ? GO:0005509 ... Q91XX7 27782885
    2132 5szr:C (2.3) BS12 MAN ? GO:0005509 ... Q91XX7 27782885
    2133 5szr:C (2.3) BS13 MAN ? GO:0005509 ... Q91XX7 27782885
    2134 5szr:C (2.3) BS14 MAN ? GO:0005509 ... Q91XX7 27782885
    2135 5t20:A (1.91) BS01 MAN ? N/A A5HMM7 27558840
    2136 5t20:A (1.91) BS02 MAN ? N/A A5HMM7 27558840
    2137 5t20:B (1.91) BS01 MAN ? N/A Q39487 27558840
    2138 5t20:B (1.91) BS02 MAN ? N/A Q39487 27558840
    2139 5t20:B (1.91) BS03 MAN ? N/A Q39487 27558840
    2140 5t20:C (1.91) BS01 MAN ? N/A A5HMM7 27558840
    2141 5t20:C (1.91) BS02 MAN ? N/A A5HMM7 27558840
    2142 5t20:D (1.91) BS01 MAN ? N/A Q39487 27558840
    2143 5t20:D (1.91) BS02 MAN ? N/A Q39487 27558840
    2144 5t20:D (1.91) BS03 MAN ? N/A Q39487 27558840
    2145 5t20:E (1.91) BS01 MAN ? N/A A5HMM7 27558840
    2146 5t20:E (1.91) BS02 MAN ? N/A A5HMM7 27558840
    2147 5t20:F (1.91) BS01 MAN ? N/A Q39487 27558840
    2148 5t20:F (1.91) BS02 MAN ? N/A Q39487 27558840
    2149 5t20:F (1.91) BS03 MAN ? N/A Q39487 27558840
    2150 5t20:G (1.91) BS01 MAN ? N/A A5HMM7 27558840
    2151 5t20:G (1.91) BS02 MAN ? N/A A5HMM7 27558840
    2152 5t20:H (1.91) BS01 MAN ? N/A Q39487 27558840
    2153 5t20:H (1.91) BS02 MAN ? N/A Q39487 27558840
    2154 5t20:H (1.91) BS03 MAN ? N/A Q39487 27558840
    2155 5t20:I (1.91) BS01 MAN ? N/A A5HMM7 27558840
    2156 5t20:I (1.91) BS02 MAN ? N/A A5HMM7 27558840
    2157 5t20:J (1.91) BS01 MAN ? N/A Q39487 27558840
    2158 5t20:J (1.91) BS02 MAN ? N/A Q39487 27558840
    2159 5t20:J (1.91) BS03 MAN ? N/A Q39487 27558840
    2160 5t20:K (1.91) BS01 MAN ? N/A A5HMM7 27558840
    2161 5t20:L (1.91) BS01 MAN ? N/A Q39487 27558840
    2162 5t20:L (1.91) BS02 MAN ? N/A Q39487 27558840
    2163 5t20:L (1.91) BS03 MAN ? N/A Q39487 27558840
    2164 5t20:M (1.91) BS01 MAN ? N/A A5HMM7 27558840
    2165 5t20:M (1.91) BS02 MAN ? N/A A5HMM7 27558840
    2166 5t20:N (1.91) BS01 MAN ? N/A Q39487 27558840
    2167 5t20:N (1.91) BS02 MAN ? N/A Q39487 27558840
    2168 5t20:N (1.91) BS03 MAN ? N/A Q39487 27558840
    2169 5t20:N (1.91) BS04 MAN ? N/A Q39487 27558840
    2170 5t20:O (1.91) BS01 MAN ? N/A A5HMM7 27558840
    2171 5t20:O (1.91) BS02 MAN ? N/A A5HMM7 27558840
    2172 5t20:P (1.91) BS01 MAN ? N/A Q39487 27558840
    2173 5t20:P (1.91) BS02 MAN ? N/A Q39487 27558840
    2174 5t20:P (1.91) BS03 MAN ? N/A Q39487 27558840
    2175 5t20:P (1.91) BS04 MAN ? N/A Q39487 27558840
    2176 5t33:H (3.2092) BS01 MAN N/A N/A N/A 27581986
    2177 5t3s:D (4.5) BS01 MAN N/A N/A N/A 27617678
    2178 5t3s:D (4.5) BS02 MAN N/A N/A N/A 27617678
    2179 5t3s:H (4.5) BS01 MAN N/A N/A N/A 27617678
    2180 5t3s:L (4.5) BS01 MAN N/A N/A N/A 27617678
    2181 5t3s:L (4.5) BS02 MAN N/A N/A N/A 27617678
    2182 5t3x:H (3.9) BS02 MAN N/A N/A N/A 27617431
    2183 5t3x:L (3.9) BS01 MAN N/A N/A N/A 27617431
    2184 5t3x:L (3.9) BS02 MAN N/A N/A N/A 27617431
    2185 5t3x:L (3.9) BS03 MAN N/A N/A N/A 27617431
    2186 5t3z:L (3.5) BS01 MAN N/A N/A N/A 27617431
    2187 5t3z:L (3.5) BS02 MAN N/A N/A N/A 27617431
    2188 5t3z:L (3.5) BS03 MAN N/A N/A N/A 27617431
    2189 5t4z:H (1.991) BS01 MAN N/A N/A N/A 28249163
    2190 5t4z:H (1.991) BS02 MAN N/A N/A N/A 28249163
    2191 5t9t:A (3.5) BS13 MAN ? GO:0005509 ... Q8K486 27782885
    2192 5t9t:A (3.5) BS14 MAN ? GO:0005509 ... Q8K486 27782885
    2193 5t9t:A (3.5) BS15 MAN ? GO:0005509 ... Q8K486 27782885
    2194 5t9t:A (3.5) BS16 MAN ? GO:0005509 ... Q8K486 27782885
    2195 5t9t:B (3.5) BS15 MAN ? GO:0005509 ... Q8K486 27782885
    2196 5t9t:B (3.5) BS16 MAN ? GO:0005509 ... Q8K486 27782885
    2197 5t9t:B (3.5) BS17 MAN ? GO:0005509 ... Q8K486 27782885
    2198 5thr:R (8.9) BS01 MAN N/A N/A N/A 27799557
    2199 5thr:T (8.9) BS01 MAN N/A N/A N/A 27799557
    2200 5tkf:A (2.1) BS01 MAN 1.14.99.56 GO:0004497 ... Q1K8B6 28177316

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417