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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 4535 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1abr:B (2.14) BS01 MAN 3.2.2.22 N/A P11140 7608980
    2 1agm:A (2.3) BS01 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    3 1agm:A (2.3) BS02 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    4 1agm:A (2.3) BS03 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    5 1agm:A (2.3) BS08 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    6 1agm:A (2.3) BS09 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    7 1agm:A (2.3) BS10 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    8 1agm:A (2.3) BS11 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    9 1agm:A (2.3) BS12 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    10 1agm:A (2.3) BS13 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    11 1agm:A (2.3) BS14 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    12 1agm:A (2.3) BS15 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    13 1apv:E (1.8) BS02 MAN 3.4.23.20 GO:0004190 ... P00798 1567842
    14 1apw:E (1.8) BS02 MAN 3.4.23.20 GO:0004190 ... P00798 1567842
    15 1bhg:A (2.53) BS01 MAN 3.2.1.31 GO:0004553 ... P08236 8599764
    16 1bhg:A (2.53) BS02 MAN 3.2.1.31 GO:0004553 ... P08236 8599764
    17 1bhg:B (2.53) BS02 MAN 3.2.1.31 GO:0004553 ... P08236 8599764
    18 1blf:A (2.8) BS01 MAN 3.4.21.- GO:0001503 ... P24627 9398529
    19 1bqp:A (2.1) BS03 MAN ? GO:0030246 ... P02867 N/A
    20 1bqp:B (2.1) BS01 MAN ? GO:0030246 ... P02867 N/A
    21 1bqp:C (2.1) BS01 MAN ? GO:0030246 ... P02867 N/A
    22 1bqp:D (2.1) BS01 MAN ? GO:0030246 ... P02867 N/A
    23 1brr:A (2.9) BS01 MAN ? GO:0005216 ... P02945 9751724
    24 1brr:C (2.9) BS01 MAN ? GO:0005216 ... P02945 9751724
    25 1bvw:A (1.92) BS01 MAN 3.2.1.91 GO:0004553 ... Q9C1S9 9882628
    26 1bwu:A (2.8) BS01 MAN ? N/A Q38789 9887270
    27 1bwu:A (2.8) BS02 MAN ? N/A Q38789 9887270
    28 1bwu:A (2.8) BS03 MAN ? N/A Q38789 9887270
    29 1bwu:A (2.8) BS04 MAN ? N/A Q38789 9887270
    30 1bwu:A (2.8) BS05 MAN ? N/A Q38789 9887270
    31 1bwu:D (2.8) BS01 MAN ? N/A Q38784 9887270
    32 1bwu:D (2.8) BS02 MAN ? N/A Q38784 9887270
    33 1bwu:D (2.8) BS03 MAN ? N/A Q38784 9887270
    34 1bwu:D (2.8) BS04 MAN ? N/A Q38784 9887270
    35 1bwu:D (2.8) BS05 MAN ? N/A Q38784 9887270
    36 1bwu:P (2.8) BS01 MAN ? N/A Q38789 9887270
    37 1bwu:P (2.8) BS02 MAN ? N/A Q38789 9887270
    38 1bwu:P (2.8) BS03 MAN ? N/A Q38789 9887270
    39 1bwu:P (2.8) BS04 MAN ? N/A Q38789 9887270
    40 1bwu:Q (2.8) BS01 MAN ? N/A Q38784 9887270
    41 1bwu:Q (2.8) BS02 MAN ? N/A Q38784 9887270
    42 1bwu:Q (2.8) BS03 MAN ? N/A Q38784 9887270
    43 1bwu:Q (2.8) BS04 MAN ? N/A Q38784 9887270
    44 1bxo:A (0.95) BS01 MAN 3.4.23.20 GO:0004190 ... P00798 9836576
    45 1c39:A (1.85) BS01 MAN ? GO:0005768 ... P11456 10514470
    46 1c39:B (1.85) BS01 MAN ? GO:0005768 ... P11456 10514470
    47 1c3m:A (2.0) BS01 MAN ? GO:0030246 ... Q9ZQY5 10647178
    48 1c3n:A (2.45) BS01 MAN ? GO:0030246 ... Q9ZQY5 10647178
    49 1c3n:A (2.45) BS02 MAN ? GO:0030246 ... Q9ZQY5 10647178
    50 1cb2:A (2.0) BS01 MAN 3.2.1.91 GO:0004553 ... P07987 8875646
    51 1cb2:A (2.0) BS02 MAN 3.2.1.91 GO:0004553 ... P07987 8875646
    52 1cb2:A (2.0) BS03 MAN 3.2.1.91 GO:0004553 ... P07987 8875646
    53 1cb2:A (2.0) BS04 MAN 3.2.1.91 GO:0004553 ... P07987 8875646
    54 1cb2:A (2.0) BS05 MAN 3.2.1.91 GO:0004553 ... P07987 8875646
    55 1cb2:A (2.0) BS06 MAN 3.2.1.91 GO:0004553 ... P07987 8875646
    56 1cb2:B (2.0) BS01 MAN 3.2.1.91 GO:0004553 ... P07987 8875646
    57 1cb2:B (2.0) BS02 MAN 3.2.1.91 GO:0004553 ... P07987 8875646
    58 1cb2:B (2.0) BS03 MAN 3.2.1.91 GO:0004553 ... P07987 8875646
    59 1cb2:B (2.0) BS04 MAN 3.2.1.91 GO:0004553 ... P07987 8875646
    60 1cb2:B (2.0) BS05 MAN 3.2.1.91 GO:0004553 ... P07987 8875646
    61 1cb2:B (2.0) BS06 MAN 3.2.1.91 GO:0004553 ... P07987 8875646
    62 1cb8:A (1.9) BS01 MAN 4.2.2.5 GO:0003824 ... Q59288 10329169
    63 1cpo:A (1.9) BS01 MAN 1.11.1.10 GO:0004601 ... P04963 8747463
    64 1cpo:A (1.9) BS02 MAN 1.11.1.10 GO:0004601 ... P04963 8747463
    65 1cpo:A (1.9) BS03 MAN 1.11.1.10 GO:0004601 ... P04963 8747463
    66 1cpo:A (1.9) BS04 MAN 1.11.1.10 GO:0004601 ... P04963 8747463
    67 1cpo:A (1.9) BS05 MAN 1.11.1.10 GO:0004601 ... P04963 8747463
    68 1cpo:A (1.9) BS06 MAN 1.11.1.10 GO:0004601 ... P04963 8747463
    69 1cpo:A (1.9) BS07 MAN 1.11.1.10 GO:0004601 ... P04963 8747463
    70 1cvn:A (2.3) BS01 MAN ? GO:0030246 ... P02866 8557713
    71 1cvn:A (2.3) BS02 MAN ? GO:0030246 ... P02866 8557713
    72 1cvn:B (2.3) BS01 MAN ? GO:0030246 ... P02866 8557713
    73 1cvn:B (2.3) BS02 MAN ? GO:0030246 ... P02866 8557713
    74 1cvn:B (2.3) BS03 MAN ? GO:0030246 ... P02866 8557713
    75 1cvn:C (2.3) BS01 MAN ? GO:0030246 ... P02866 8557713
    76 1cvn:C (2.3) BS02 MAN ? GO:0030246 ... P02866 8557713
    77 1cvn:C (2.3) BS03 MAN ? GO:0030246 ... P02866 8557713
    78 1cvn:D (2.3) BS01 MAN ? GO:0030246 ... P02866 8557713
    79 1cvn:D (2.3) BS02 MAN ? GO:0030246 ... P02866 8557713
    80 1cxp:C (1.8) BS02 MAN 1.11.2.2 GO:0004601 ... P05164 10766826
    81 1cxp:D (1.8) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 10766826
    82 1d2v:C (1.75) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 10766826
    83 1d2v:D (1.75) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 10766826
    84 1d5l:C (1.9) BS02 MAN 1.11.2.2 GO:0004601 ... P05164 11705390
    85 1d5l:D (1.9) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 11705390
    86 1d7w:C (1.9) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 11705390
    87 1d7w:D (1.9) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 11705390
    88 1dbg:A (1.7) BS01 MAN 4.2.2.19 N/A Q46079 10600383
    89 1dbo:A (1.7) BS01 MAN 4.2.2.19 N/A Q46079 10600383
    90 1dgl:A (2.4) BS01 MAN ? GO:0005537 ... P08902 9830028
    91 1dgl:A (2.4) BS02 MAN ? GO:0005537 ... P08902 9830028
    92 1dgl:B (2.4) BS02 MAN ? GO:0005537 ... P08902 9830028
    93 1dgl:B (2.4) BS03 MAN ? GO:0005537 ... P08902 9830028
    94 1dnu:C (1.85) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 11705390
    95 1dnu:D (1.85) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 11705390
    96 1dnw:C (1.9) BS02 MAN 1.11.2.2 GO:0004601 ... P05164 11705390
    97 1dnw:D (1.9) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 11705390
    98 1dog:A (2.3) BS01 MAN 3.2.1.3 GO:0004339 ... P69327 8431441
    99 1dog:A (2.3) BS02 MAN 3.2.1.3 GO:0004339 ... P69327 8431441
    100 1dog:A (2.3) BS03 MAN 3.2.1.3 GO:0004339 ... P69327 8431441
    101 1dog:A (2.3) BS04 MAN 3.2.1.3 GO:0004339 ... P69327 8431441
    102 1dog:A (2.3) BS05 MAN 3.2.1.3 GO:0004339 ... P69327 8431441
    103 1dog:A (2.3) BS06 MAN 3.2.1.3 GO:0004339 ... P69327 8431441
    104 1dog:A (2.3) BS07 MAN 3.2.1.3 GO:0004339 ... P69327 8431441
    105 1dog:A (2.3) BS08 MAN 3.2.1.3 GO:0004339 ... P69327 8431441
    106 1dog:A (2.3) BS09 MAN 3.2.1.3 GO:0004339 ... P69327 8431441
    107 1dog:A (2.3) BS10 MAN 3.2.1.3 GO:0004339 ... P69327 8431441
    108 1dpj:A (1.8) BS02 MAN 3.4.23.25 GO:0000324 ... P07267 10655612
    109 1eom:A (2.1) BS01 MAN 3.2.1.96 GO:0005576 ... P36913 10891067
    110 1eom:A (2.1) BS02 MAN 3.2.1.96 GO:0005576 ... P36913 10891067
    111 1fmu:A (2.7) BS01 MAN 3.4.23.25 GO:0000324 ... P07267 12127998
    112 1g0v:A (2.0) BS02 MAN 3.4.23.25 GO:0000324 ... P07267 11042188
    113 1g12:A (1.6) BS01 MAN 3.4.24.20 GO:0004222 ... P81054 11223512
    114 1gah:A (2.0) BS01 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    115 1gah:A (2.0) BS02 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    116 1gah:A (2.0) BS03 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    117 1gah:A (2.0) BS06 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    118 1gah:A (2.0) BS07 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    119 1gah:A (2.0) BS08 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    120 1gah:A (2.0) BS09 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    121 1gah:A (2.0) BS10 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    122 1gah:A (2.0) BS11 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    123 1gai:A (1.7) BS01 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    124 1gai:A (1.7) BS02 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    125 1gai:A (1.7) BS03 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    126 1gai:A (1.7) BS06 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    127 1gai:A (1.7) BS07 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    128 1gai:A (1.7) BS08 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    129 1gai:A (1.7) BS09 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    130 1gai:A (1.7) BS10 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    131 1gai:A (1.7) BS11 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    132 1ge6:A (2.2) BS01 MAN 3.4.24.20 GO:0004222 ... P81054 11223512
    133 1ge7:A (2.0) BS01 MAN 3.4.24.20 GO:0004222 ... P81054 11223512
    134 1ge7:B (2.0) BS01 MAN 3.4.24.20 GO:0004222 ... P81054 11223512
    135 1glm:A (2.4) BS01 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    136 1glm:A (2.4) BS02 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    137 1glm:A (2.4) BS03 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    138 1glm:A (2.4) BS04 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    139 1glm:A (2.4) BS05 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    140 1glm:A (2.4) BS06 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    141 1glm:A (2.4) BS07 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    142 1glm:A (2.4) BS08 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    143 1glm:A (2.4) BS09 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    144 1gpe:A (1.8) BS02 MAN 1.1.3.4 GO:0005576 ... P81156 10216293
    145 1gpe:B (1.8) BS02 MAN 1.1.3.4 GO:0005576 ... P81156 10216293
    146 1gw0:A (2.4) BS02 MAN 1.10.3.2 GO:0005507 ... Q70KY3 12118243
    147 1gw0:B (2.4) BS01 MAN 1.10.3.2 GO:0005507 ... Q70KY3 12118243
    148 1gw0:B (2.4) BS02 MAN 1.10.3.2 GO:0005507 ... Q70KY3 12118243
    149 1hfu:A (1.68) BS01 MAN 1.10.3.2 GO:0005507 ... Q9Y780 11173497
    150 1hgw:A (2.1) BS01 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    151 1hgw:A (2.1) BS02 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    152 1hgw:A (2.1) BS03 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    153 1hgw:A (2.1) BS04 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    154 1hgw:A (2.1) BS05 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    155 1hgw:A (2.1) BS06 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    156 1hgw:B (2.1) BS01 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    157 1hgw:B (2.1) BS02 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    158 1hgw:B (2.1) BS03 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    159 1hgw:B (2.1) BS04 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    160 1hgw:B (2.1) BS05 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    161 1hgw:B (2.1) BS06 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    162 1hgy:A (2.2) BS01 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    163 1hgy:A (2.2) BS02 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    164 1hgy:A (2.2) BS03 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    165 1hgy:A (2.2) BS04 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    166 1hgy:B (2.2) BS01 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    167 1hgy:B (2.2) BS02 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    168 1hgy:B (2.2) BS03 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    169 1hgy:B (2.2) BS04 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    170 1hm2:A (2.0) BS01 MAN 4.2.2.5 GO:0003824 ... Q59288 11327856
    171 1hm3:A (2.1) BS01 MAN 4.2.2.5 GO:0003824 ... Q59288 11327856
    172 1hmu:A (2.0) BS01 MAN 4.2.2.5 GO:0003824 ... Q59288 11327856
    173 1hmw:A (2.3) BS01 MAN 4.2.2.5 GO:0003824 ... Q59288 11327856
    174 1i3h:A (1.2) BS01 MAN ? GO:0030246 ... P02866 11453694
    175 1ia5:A (2.0) BS01 MAN 3.2.1.15 GO:0004650 ... O74213 11518536
    176 1ia5:A (2.0) BS02 MAN 3.2.1.15 GO:0004650 ... O74213 11518536
    177 1ia5:A (2.0) BS03 MAN 3.2.1.15 GO:0004650 ... O74213 11518536
    178 1ib4:A (2.0) BS01 MAN 3.2.1.15 GO:0004650 ... O74213 11518536
    179 1ib4:A (2.0) BS02 MAN 3.2.1.15 GO:0004650 ... O74213 11518536
    180 1ib4:A (2.0) BS03 MAN 3.2.1.15 GO:0004650 ... O74213 11518536
    181 1ib4:A (2.0) BS04 MAN 3.2.1.15 GO:0004650 ... O74213 11518536
    182 1ib4:B (2.0) BS01 MAN 3.2.1.15 GO:0004650 ... O74213 11518536
    183 1ib4:B (2.0) BS02 MAN 3.2.1.15 GO:0004650 ... O74213 11518536
    184 1ib4:B (2.0) BS03 MAN 3.2.1.15 GO:0004650 ... O74213 11518536
    185 1ib4:B (2.0) BS04 MAN 3.2.1.15 GO:0004650 ... O74213 11518536
    186 1ib4:B (2.0) BS05 MAN 3.2.1.15 GO:0004650 ... O74213 11518536
    187 1ibq:B (2.14) BS01 MAN 3.4.23.18 GO:0004190 ... Q12567 11418762
    188 1iiy:A (-1.00) BS01 MAN ? GO:0030246 ... P81180 11591348
    189 1iiy:A (-1.00) BS02 MAN ? GO:0030246 ... P81180 11591348
    190 1ing:B (2.4) BS01 MAN 3.2.1.18 GO:0004308 ... P06820 7650674
    191 1inh:B (2.4) BS01 MAN 3.2.1.18 GO:0004308 ... P06820 7650674
    192 1ivc:B (2.4) BS01 MAN 3.2.1.18 GO:0004308 ... P06820 7880809
    193 1ivd:B (1.9) BS01 MAN 3.2.1.18 GO:0004308 ... P06820 7880809
    194 1ive:B (2.4) BS01 MAN 3.2.1.18 GO:0004308 ... P06820 7880809
    195 1ivg:B (1.9) BS01 MAN 3.2.1.18 GO:0004308 ... P06820 7880809
    196 1ivg:B (1.9) BS02 MAN 3.2.1.18 GO:0004308 ... P06820 7880809
    197 1ize:A (1.9) BS02 MAN 3.4.23.18 GO:0004190 ... P0CU33 12595261
    198 1jne:A (1.7) BS01 MAN ? GO:0005576 ... Q9V3D4 11821393
    199 1jpc:A (2.0) BS01 MAN ? N/A P30617 8939757
    200 1jpc:A (2.0) BS02 MAN ? N/A P30617 8939757

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417