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BioLiP Library
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5ad7:A (1.95) BS03 M85 1.14.13.39 GO:0004517 ... P29476 26469213 MOAD: Ki=0.569uM
    2 5ad7:B (1.95) BS04 M85 1.14.13.39 GO:0004517 ... P29476 26469213 MOAD: Ki=0.569uM
    3 5add:A (2.1) BS03 M85 1.14.13.39 GO:0004517 ... P29476 26469213
    4 5add:B (2.1) BS05 M85 1.14.13.39 GO:0004517 ... P29476 26469213
    5 5adl:A (2.205) BS03 M85 1.14.13.39 GO:0004517 ... P29473 26469213
    6 5adl:B (2.205) BS05 M85 1.14.13.39 GO:0004517 ... P29473 26469213
    7 5g6h:A (1.911) BS03 M85 1.14.14.47 GO:0004517 ... O34453 27607918
    8 5g6i:A (1.981) BS03 M85 1.14.14.47 GO:0004517 ... O34453 27607918
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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