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BioLiP
Download all results in tab-seperated text for 28 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3cx9:A (2.8) BS01 LPX ? GO:0003677 ... P02768 19601929 PDBbind: -logKd/Ki=4.89, Kd=12.9uM
    2 6ks1:A (2.4) BS02 LPX ? GO:0016020 ... Q86V24 32796916
    3 6ks1:L (2.4) BS01 LPX N/A N/A N/A 32796916
    4 6zo5:C (2.5) BS01 LPX ? GO:0005515 ... P31224 34188038
    5 6zo5:C (2.5) BS02 LPX ? GO:0005515 ... P31224 34188038
    6 6zo6:C (2.35) BS01 LPX ? GO:0005515 ... P31224 34188038
    7 6zo8:C (2.5) BS01 LPX ? GO:0005515 ... P31224 34188038
    8 6zo8:C (2.5) BS02 LPX ? GO:0005515 ... P31224 34188038
    9 6zoh:C (2.8) BS01 LPX ? GO:0005515 ... P31224 34188038
    10 6zzy:J (3.16) BS05 LPX ? GO:0009507 ... W8SUD1 34462576
    11 6zzy:a (3.16) BS14 LPX ? GO:0009765 ... A0A2P6TT36 34462576
    12 7a4p:F (4.2) BS07 LPX ? GO:0009522 ... A0A2P6TPV8 34462576
    13 7a4p:a (4.2) BS16 LPX ? GO:0009765 ... A0A2P6TT36 34462576
    14 7ouk:C (2.6) BS02 LPX ? GO:0005515 ... P31224 35013254
    15 7ouk:C (2.6) BS03 LPX ? GO:0005515 ... P31224 35013254
    16 7oul:C (2.8) BS01 LPX ? GO:0005515 ... P31224 35013254
    17 7oum:C (2.45) BS01 LPX ? GO:0005515 ... P31224 35013254
    18 7pi0:C (2.43) BS15 LPX ? GO:0005737 ... D0FXY3 36799903
    19 7pi0:S (2.43) BS18 LPX ? GO:0009765 ... G4WUW1 36799903
    20 7pi0:s (2.43) BS18 LPX ? GO:0009765 ... G4WUW1 36799903
    21 7pin:C1 (3.6) BS16 LPX ? GO:0005737 ... D0FXY3 36799903
    22 7pin:S1 (3.6) BS18 LPX N/A GO:0009765 ... N/A 36799903
    23 7pin:c (3.6) BS16 LPX ? GO:0005737 ... D0FXY3 36799903
    24 7pin:s1 (3.6) BS18 LPX N/A GO:0009765 ... N/A 36799903
    25 7piw:C1 (4.0) BS16 LPX ? GO:0005737 ... D0FXY3 36799903
    26 7piw:S1 (4.0) BS17 LPX N/A GO:0009765 ... N/A 36799903
    27 7piw:s1 (4.0) BS19 LPX N/A GO:0009765 ... N/A 36799903
    28 7pnk:C (3.61) BS16 LPX ? GO:0005737 ... D0FXY3 36799903
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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