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BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2e59:A (2.21) BS01 LP5 ? GO:0001530 ... Q9Y6Y9 17569869
    2 3mu3:A (2.4) BS02 LP5 ? GO:0005576 ... Q90890 20534476
    3 3mu3:B (2.4) BS02 LP5 ? GO:0005576 ... Q90890 20534476
    4 3rgy:A (2.0) BS03 LP5 3.4.21.- GO:0005576 ... P24627 N/A
    5 3rt4:C (1.7) BS01 LP5 ? GO:0001818 ... Q9GK12 21454594 MOAD: Kd=1.6nM
    PDBbind: -logKd/Ki=8.80, Kd=1.6nM
    6 3rt4:D (1.7) BS01 LP5 ? GO:0001818 ... Q9GK12 21454594 PDBbind: -logKd/Ki=8.80, Kd=1.6nM
    7 3vq1:A (2.7) BS01 LP5 ? GO:0002224 ... Q9QUK6 22532668
    8 3vq1:C (2.7) BS02 LP5 ? GO:0001530 ... Q9JHF9 22532668
    9 3vq1:D (2.7) BS02 LP5 ? GO:0001530 ... Q9JHF9 22532668
    10 3vq2:A (2.48) BS01 LP5 ? GO:0002224 ... Q9QUK6 22532668
    11 3vq2:B (2.48) BS01 LP5 ? GO:0002224 ... Q9QUK6 22532668
    12 3vq2:C (2.48) BS02 LP5 ? GO:0001530 ... Q9JHF9 22532668
    13 3vq2:D (2.48) BS02 LP5 ? GO:0001530 ... Q9JHF9 22532668
    14 4g8a:A (2.4) BS01 LP5 ? GO:0002224 ... O00206 23055527
    15 4g8a:B (2.4) BS01 LP5 ? GO:0002224 ... O00206 23055527
    16 4g8a:C (2.4) BS02 LP5 ? GO:0001530 ... Q9Y6Y9 23055527
    17 4g8a:D (2.4) BS02 LP5 ? GO:0001530 ... Q9Y6Y9 23055527
    18 4gf9:C (2.8) BS01 LP5 ? GO:0001818 ... Q9GK12 23326499
    19 4gf9:D (2.8) BS02 LP5 ? GO:0001818 ... Q9GK12 23326499
    20 4ggm:X (2.897) BS01 LP5 3.6.1.54 GO:0042802 ... A0A0H3C8Q1 23042606
    21 4guw:A (1.6) BS01 LP5 3.2.2.22 GO:0000166 ... D9J2T9 N/A
    22 4lkv:A (3.5109) BS02 LP5 2.7.1.130 GO:0005524 ... O67572 25023290
    23 4lkv:C (3.5109) BS01 LP5 2.7.1.130 GO:0005524 ... O67572 25023290
    24 4oug:C (2.46) BS01 LP5 ? GO:0001818 ... Q9GK12 N/A
    25 4oug:D (2.46) BS01 LP5 ? GO:0001818 ... Q9GK12 N/A
    26 5b49:A (1.65) BS03 LP5 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    27 5b49:B (1.65) BS03 LP5 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    28 5b4a:A (1.72) BS01 LP5 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    29 5b4a:B (1.72) BS01 LP5 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    30 5b4b:A (1.6) BS01 LP5 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    31 5b4b:B (1.6) BS01 LP5 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    32 5ijd:C (2.7) BS02 LP5 ? GO:0001530 ... Q9JHF9 26831104
    33 5ijd:D (2.7) BS02 LP5 ? GO:0001530 ... Q9JHF9 26831104
    34 5k8k:A (2.55) BS03 LP5 3.6.1.54 GO:0005737 ... P44046 27780190
    35 6ph9:A (1.92) BS03 LP5 3.6.1.54 GO:0005737 ... A6T5R0 32041866
    36 8qjz:A (1.35) BS03 LP5 3.6.1.54 GO:0005737 ... A0A066QL39 38579010
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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