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BioLiP
Download all results in tab-seperated text for 26 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1e6x:M (1.6) BS01 LGC 3.2.1.147 GO:0004553 ... P29736 10978344
    2 2e40:A (1.9) BS01 LGC 3.2.1.21 GO:0004553 ... Q25BW5 17376440
    3 2e40:B (1.9) BS01 LGC 3.2.1.21 GO:0004553 ... Q25BW5 17376440
    4 2vwg:A (2.0) BS02 LGC 1.1.1.47 GO:0000166 ... Q977U7 19131516
    5 2w39:A (1.1) BS02 LGC 3.2.1.6 GO:0004553 ... Q874E3 19769746
    6 3azz:A (1.81) BS01 LGC 3.2.1.39 GO:0004553 ... Q9WXN1 22065588
    7 3azz:B (1.81) BS01 LGC 3.2.1.39 GO:0004553 ... Q9WXN1 22065588
    8 3azz:C (1.81) BS01 LGC 3.2.1.39 GO:0004553 ... Q9WXN1 22065588
    9 3eqo:A (2.25) BS01 LGC 3.2.1.58 GO:0004338 ... Q2Z1W1 19193645
    10 3eqo:B (2.25) BS01 LGC 3.2.1.58 GO:0004338 ... Q2Z1W1 19193645
    11 3vif:A (1.0) BS01 LGC 3.2.1.21 GO:0004553 ... Q8T0W7 22751668
    12 4ynu:A (1.57) BS02 LGC 1.1.5.9 GO:0016491 ... B8MX95 26311535
    13 4ynu:A (1.57) BS03 LGC 1.1.5.9 GO:0016491 ... B8MX95 26311535
    14 4zlg:A (1.75) BS02 LGC 2.4.1.321 GO:0003824 ... Q21MB1 26041776
    15 4zob:A (2.4) BS01 LGC 3.2.1.21 GO:0004553 ... Q92AS9 26886583
    16 4zob:A (2.4) BS02 LGC 3.2.1.21 GO:0004553 ... Q92AS9 26886583
    17 4zob:B (2.4) BS01 LGC 3.2.1.21 GO:0004553 ... Q92AS9 26886583
    18 4zob:B (2.4) BS02 LGC 3.2.1.21 GO:0004553 ... Q92AS9 26886583
    19 4zob:B (2.4) BS03 LGC 3.2.1.21 GO:0004553 ... Q92AS9 26886583
    20 5xxm:A (1.7) BS02 LGC 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    21 5xxm:B (1.7) BS02 LGC 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    22 7d6b:A (2.1) BS01 LGC 3.2.1.21 GO:0004553 ... Q7XSK0 33471829
    23 7d6b:B (2.1) BS01 LGC 3.2.1.21 GO:0004553 ... Q7XSK0 33471829
    24 7vkf:A (1.6) BS01 LGC ? GO:0000166 ... A0A1S9DW10 N/A
    25 8grj:B (2.95) BS03 LGC ? GO:0000166 ... Q8GQE7 N/A
    26 8grj:D (2.95) BS03 LGC ? GO:0000166 ... Q8GQE7 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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