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BioLiP
Download all results in tab-seperated text for 99 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2o9b:A (2.15) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 17322301
    2 2o9c:A (1.45) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 17322301
    3 2ool:A (2.2) BS01 LBV 2.7.13.3 GO:0006355 ... Q6N5G2 17640891
    4 2ool:B (2.2) BS01 LBV 2.7.13.3 GO:0006355 ... Q6N5G2 17640891
    5 3s7n:A (2.451) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 22210774
    6 3s7o:A (1.24) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 22210774
    7 3s7p:A (1.722) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 22210774
    8 3s7q:A (1.748) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 22210774
    9 4cqh:A (1.14) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 24832154
    10 4e04:A (1.79) BS01 LBV 2.7.13.3 GO:0006355 ... Q6N5G3 22868772
    11 4e04:B (1.79) BS01 LBV 2.7.13.3 GO:0006355 ... Q6N5G3 22868772
    12 4ijg:A (1.701) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 25253687
    13 4o01:A (3.24) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 24776794
    14 4o01:B (3.24) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 24776794
    15 4o01:C (3.24) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 24776794
    16 4o01:D (3.24) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 24776794
    17 4o0p:A (3.8) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 24776794
    18 4o0p:B (3.8) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 24776794
    19 4o8g:A (1.652) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 25253687
    20 4q0h:A (1.157) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 25006244
    21 4q0i:A (1.744) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 25006244
    22 4q0j:A (2.747) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 25006244
    23 4y3i:A (1.69) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 25650486
    24 4y5f:A (1.7) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 25650486
    25 4z1w:A (1.3) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 26636092
    26 4zrr:A (1.5) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 26636092
    27 5ajg:A (1.11) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 27471775
    28 5k5b:A (1.35) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 27756898
    29 5l8m:A (2.1) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 27756898
    30 5lbr:A (2.2) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 27756898
    31 5llw:A (3.0) BS01 LBV 2.7.7.65 GO:0005525 ... F7RW09 28275738
    32 5llw:B (3.0) BS01 LBV 2.7.7.65 GO:0005525 ... F7RW09 28275738
    33 5llx:A (2.8) BS01 LBV 2.7.7.65 GO:0005525 ... F7RW09 28275738
    34 5llx:B (2.8) BS01 LBV 2.7.7.65 GO:0005525 ... F7RW09 28275738
    35 5lly:A (2.4) BS01 LBV 2.7.7.65 GO:0006355 ... F7RW09 28275738
    36 5lly:B (2.4) BS01 LBV 2.7.7.65 GO:0006355 ... F7RW09 28275738
    37 5lly:C (2.4) BS01 LBV 2.7.7.65 GO:0006355 ... F7RW09 28275738
    38 5lly:D (2.4) BS01 LBV 2.7.7.65 GO:0006355 ... F7RW09 28275738
    39 5mg0:A (1.65) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 28250468
    40 5mg1:A (3.3) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 28250468
    41 5nfx:A (1.34) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 29622676
    42 5nm3:A (3.3) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 29622676
    43 5nm3:B (3.3) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 29622676
    44 5nm3:C (3.3) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 29622676
    45 5nm3:D (3.3) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 29622676
    46 5nwn:A (3.6) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 29622676
    47 5nwn:B (3.6) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 29622676
    48 5nwn:C (3.6) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 29622676
    49 5nwn:D (3.6) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 29622676
    50 6et7:A (2.852) BS01 LBV 2.7.7.65 GO:0005525 ... F7RW09 29869984
    51 6et7:B (2.852) BS01 LBV 2.7.7.65 GO:0005525 ... F7RW09 29869984
    52 6fht:A (2.35) BS01 LBV 2.7.13.3 GO:0006355 ... P72951
    Q9RZA4    		 29695503
    53 6fht:B (2.35) BS01 LBV 2.7.13.3 GO:0006355 ... P72951
    Q9RZA4    		 29695503
    54 6ftd:A (1.4) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 29938729
    55 6ftd:B (1.4) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 29938729
    56 6saw:A (3.0) BS01 LBV 2.7.7.65 GO:0006355 ... F7RW09 31801828
    57 6saw:B (3.0) BS01 LBV 2.7.7.65 GO:0006355 ... F7RW09 31801828
    58 6saw:C (3.0) BS01 LBV 2.7.7.65 GO:0006355 ... F7RW09 31801828
    59 6saw:D (3.0) BS01 LBV 2.7.7.65 GO:0006355 ... F7RW09 31801828
    60 6saw:E (3.0) BS01 LBV 2.7.7.65 GO:0006355 ... F7RW09 31801828
    61 6saw:F (3.0) BS01 LBV 2.7.7.65 GO:0006355 ... F7RW09 31801828
    62 6saw:G (3.0) BS01 LBV 2.7.7.65 GO:0006355 ... F7RW09 31801828
    63 6saw:H (3.0) BS01 LBV 2.7.7.65 GO:0006355 ... F7RW09 31801828
    64 6sax:A (2.4) BS01 LBV 2.7.7.65 GO:0006355 ... F7RW09 31801828
    65 6sax:B (2.4) BS01 LBV 2.7.7.65 GO:0006355 ... F7RW09 31801828
    66 6t3l:A (2.07) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 32228856
    67 6t3l:B (2.07) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 32228856
    68 6t3u:A (2.21) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 32228856
    69 6t3u:B (2.21) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 32228856
    70 7z9d:A (1.88) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 35906527
    71 7z9e:A (1.48) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 35906527
    72 8avv:A (3.4) BS01 LBV 2.7.13.3 GO:0000155 ... Q9RZA4
    Q9RZA5    		 36509762
    73 8avv:B (3.4) BS01 LBV 2.7.13.3 GO:0000155 ... Q9RZA4
    Q9RZA5    		 36509762
    74 8avw:A (3.62) BS01 LBV 2.7.13.3 GO:0000155 ... Q9RZA4
    Q9RZA5    		 36509762
    75 8avw:B (3.62) BS01 LBV 2.7.13.3 GO:0000155 ... Q9RZA4
    Q9RZA5    		 36509762
    76 8bor:A (2.3) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 37392739
    77 8bor:B (2.3) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 37392739
    78 8bor:C (2.3) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 37392739
    79 8bor:D (2.3) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 37392739
    80 8c3i:A (2.1) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 N/A
    81 8c3i:B (2.1) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 N/A
    82 8sgk:A (3.7) BS01 LBV 2.7.13.3 GO:0000156 ... Q9RZA4 N/A
    83 8sgk:B (3.7) BS01 LBV 2.7.13.3 GO:0000156 ... Q9RZA4 N/A
    84 8u4x:A (2.81) BS01 LBV N/A N/A Q885D3 39127720
    85 8u4x:B (2.81) BS01 LBV N/A N/A Q885D3 39127720
    86 8u62:A (3.3) BS01 LBV N/A N/A Q885D3 39127720
    87 8u62:B (3.3) BS01 LBV N/A N/A Q885D3 39127720
    88 8u63:A (3.01) BS01 LBV N/A N/A Q885D3 39127720
    89 8u63:B (3.01) BS01 LBV N/A N/A Q885D3 39127720
    90 8u64:A (3.13) BS01 LBV N/A N/A Q885D3 39127720
    91 8u64:B (3.13) BS01 LBV N/A N/A Q885D3 39127720
    92 8u65:A (3.01) BS01 LBV N/A N/A Q885D3 39127720
    93 8u65:B (3.01) BS01 LBV N/A N/A Q885D3 39127720
    94 8u8z:A (3.25) BS01 LBV N/A N/A Q885D3 39127720
    95 8u8z:B (3.25) BS01 LBV N/A N/A Q885D3 39127720
    96 9eut:A (2.95) BS01 LBV N/A N/A Q9HWR3 39216473
    97 9eut:B (2.95) BS01 LBV N/A N/A Q9HWR3 39216473
    98 9euy:A (2.95) BS01 LBV N/A N/A Q9HWR3 39216473
    99 9euy:B (2.95) BS01 LBV N/A N/A Q9HWR3 39216473
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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