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BioLiP
Download all results in tab-seperated text for 45 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2q0u:A (1.45) BS03 LAB 3.6.4.- GO:0000287 ... P68135 17599353 BindingDB: IC50=8470nM
    2 2v51:B (2.35) BS03 LAB 3.6.4.- GO:0000287 ... P68135 19008859 BindingDB: IC50=8470nM
    3 2v51:D (2.35) BS03 LAB 3.6.4.- GO:0000287 ... P68135 19008859 BindingDB: IC50=8470nM
    4 2v52:B (1.45) BS01 LAB 3.6.4.- GO:0000287 ... P68135 19008859 BindingDB: IC50=8470nM
    5 2yje:A (3.1) BS01 LAB 3.6.4.- GO:0000287 ... P68135 21673315 BindingDB: IC50=8470nM
    6 2yje:B (3.1) BS02 LAB 3.6.4.- GO:0000287 ... P68135 21673315 BindingDB: IC50=8470nM
    7 2yje:C (3.1) BS01 LAB 3.6.4.- GO:0000287 ... P68135 21673315 BindingDB: IC50=8470nM
    8 2yjf:A (3.5) BS01 LAB 3.6.4.- GO:0000287 ... P68135 21673315 BindingDB: IC50=8470nM
    9 2yjf:C (3.5) BS01 LAB 3.6.4.- GO:0000287 ... P68135 21673315 BindingDB: IC50=8470nM
    10 3mn5:A (1.5) BS03 LAB 3.6.4.- GO:0000287 ... P68135 20538977 BindingDB: IC50=8470nM
    11 4b1u:B (2.0) BS01 LAB 3.6.4.- GO:0001725 ... P68134 23041370
    12 4b1v:A (1.75) BS03 LAB 3.6.4.- GO:0000287 ... P68135 23041370 BindingDB: IC50=8470nM
    13 4b1v:B (1.75) BS03 LAB 3.6.4.- GO:0000287 ... P68135 23041370 BindingDB: IC50=8470nM
    14 4b1w:B (1.95) BS02 LAB 3.6.4.- GO:0000287 ... P68135 23041370 BindingDB: IC50=8470nM
    15 4b1x:B (1.8) BS02 LAB 3.6.4.- GO:0000287 ... P68135 23041370 BindingDB: IC50=8470nM
    16 4b1y:B (1.29) BS01 LAB 3.6.4.- GO:0000287 ... P68135 23041370 BindingDB: IC50=8470nM
    17 4v0u:A (7.88) BS01 LAB 3.6.4.- GO:0000287 ... P68135 25774600 BindingDB: IC50=8470nM
    18 4v0u:B (7.88) BS01 LAB 3.6.4.- GO:0000287 ... P68135 25774600 BindingDB: IC50=8470nM
    19 4v0u:C (7.88) BS01 LAB 3.6.4.- GO:0000287 ... P68135 25774600 BindingDB: IC50=8470nM
    20 4v0u:L (7.88) BS01 LAB 3.6.4.- GO:0000287 ... P68135 25774600 BindingDB: IC50=8470nM
    21 4v0u:M (7.88) BS01 LAB 3.6.4.- GO:0000287 ... P68135 25774600 BindingDB: IC50=8470nM
    22 5yee:B (1.81) BS01 LAB 3.6.4.- GO:0000287 ... P68135 30283132 BindingDB: IC50=8470nM
    23 5zza:A (1.53) BS01 LAB 3.6.4.- GO:0000287 ... P68135 30283132 BindingDB: IC50=8470nM
    24 5zza:A (1.53) BS02 LAB 3.6.4.- GO:0000287 ... P68135 30283132 BindingDB: IC50=8470nM
    25 5zza:P (1.53) BS01 LAB ? GO:0003779 ... A0A1Q9N7W7 30283132
    26 5zzb:B (2.3) BS01 LAB 3.6.4.- GO:0000287 ... P68135 30283132 BindingDB: IC50=8470nM
    27 5zzb:D (2.3) BS01 LAB 3.6.4.- GO:0000287 ... P68135 30283132 BindingDB: IC50=8470nM
    28 6gvc:A (2.6) BS01 LAB 3.6.4.- GO:0000287 ... P68135 31209295 BindingDB: IC50=8470nM
    29 6gvc:B (2.6) BS01 LAB 3.6.4.- GO:0000287 ... P68135 31209295 BindingDB: IC50=8470nM
    30 6gvc:C (2.6) BS01 LAB 3.6.4.- GO:0000287 ... P68135 31209295 BindingDB: IC50=8470nM
    31 6gvc:D (2.6) BS01 LAB 3.6.4.- GO:0000287 ... P68135 31209295 BindingDB: IC50=8470nM
    32 6nas:A (2.9) BS02 LAB 3.6.4.- GO:0000287 ... P68135 32284999 BindingDB: IC50=8470nM
    33 6nbe:A (2.0) BS02 LAB 3.6.4.- GO:0000287 ... P68135 32284999 BindingDB: IC50=8470nM
    34 6nbw:A (2.5) BS02 LAB 3.6.4.- GO:0000079 ... P60709 32284999
    35 6w7v:A (1.7) BS02 LAB 3.6.4.- GO:0000287 ... P68135 33938740 BindingDB: IC50=8470nM
    36 7c2f:A (2.03) BS01 LAB 3.6.4.- GO:0000287 ... P68135 N/A BindingDB: IC50=8470nM
    37 7c2f:C (2.03) BS01 LAB 3.6.4.- GO:0000287 ... P68135 N/A BindingDB: IC50=8470nM
    38 8bjh:A (1.69) BS02 LAB 3.6.4.- GO:0000287 ... P68135 37747912
    39 8bjj:A (1.699) BS02 LAB 3.6.4.- GO:0000287 ... P68135 37747912
    40 8bo1:A (2.501) BS01 LAB 3.6.4.- GO:0000287 ... P68135 37747912
    41 8bo1:C (2.501) BS01 LAB 3.6.4.- GO:0000287 ... P68135 37747912
    42 8br0:A (2.218) BS01 LAB 3.6.4.- GO:0000287 ... P68135 37747912
    43 8br0:C (2.218) BS01 LAB 3.6.4.- GO:0000287 ... P68135 37747912
    44 8br1:A (2.044) BS01 LAB 3.6.4.- GO:0000287 ... P68135 37747912
    45 8br1:C (2.044) BS02 LAB 3.6.4.- GO:0000287 ... P68135 37747912
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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