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BioLiP
Download all results in tab-seperated text for 5 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2jdr:A (2.3) BS02 L20 2.7.11.1 GO:0004672 ... P31751 17275837 MOAD: ic50=0.5nM
    BindingDB: IC50=0.5nM
    2 2jds:A (2.0) BS02 L20 2.7.11.11 GO:0001669 ... P00517 17275837 MOAD: Ki=6.3nM
    PDBbind: -logKd/Ki=8.20, Ki=6.3nM
    BindingDB: IC50=6nM
    3 2jdv:A (2.08) BS02 L20 2.7.11.11 GO:0001669 ... P00517 17275837 PDBbind: -logKd/Ki=8.20, Ki=6.3nM
    BindingDB: IC50=6nM
    4 2uzu:E (2.4) BS02 L20 2.7.11.11 GO:0001669 ... P00517 17523610 MOAD: ic50=0.16nM
    BindingDB: IC50=6nM
    5 5dgz:A (2.502) BS01 L20 2.7.11.1 GO:0004672 ... P11309 26459208 MOAD: Ki=14nM
    PDBbind: -logKd/Ki=7.85, Ki=14nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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