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BioLiP
Download all results in tab-seperated text for 31 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3pc4:A (1.7) BS02 KOU 4.2.1.22 GO:0004122 ... Q9VRD9 21081698
    2 4iy7:A (1.7) BS04 KOU 4.4.1.1 GO:0003962 ... Q5H4T8 24531493
    3 4iy7:B (1.7) BS05 KOU 4.4.1.1 GO:0003962 ... Q5H4T8 24531493
    4 4iy7:C (1.7) BS02 KOU 4.4.1.1 GO:0003962 ... Q5H4T8 24531493
    5 4iy7:C (1.7) BS04 KOU 4.4.1.1 GO:0003962 ... Q5H4T8 24531493
    6 4iy7:D (1.7) BS02 KOU 4.4.1.1 GO:0003962 ... Q5H4T8 24531493
    7 4iy7:D (1.7) BS05 KOU 4.4.1.1 GO:0003962 ... Q5H4T8 24531493
    8 6dz4:B (1.45) BS01 KOU 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    9 6dzo:B (1.64) BS01 KOU 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    10 6ldo:A (2.75) BS01 KOU 4.4.1.1
    4.4.1.8    		 GO:0003824 ... F9UT53 32913258
    11 6ldo:A (2.75) BS02 KOU 4.4.1.1
    4.4.1.8    		 GO:0003824 ... F9UT53 32913258
    12 6ldo:B (2.75) BS01 KOU 4.4.1.1
    4.4.1.8    		 GO:0003824 ... F9UT53 32913258
    13 6ldo:B (2.75) BS02 KOU 4.4.1.1
    4.4.1.8    		 GO:0003824 ... F9UT53 32913258
    14 6ldo:C (2.75) BS01 KOU 4.4.1.1
    4.4.1.8    		 GO:0003824 ... F9UT53 32913258
    15 6ldo:C (2.75) BS02 KOU 4.4.1.1
    4.4.1.8    		 GO:0003824 ... F9UT53 32913258
    16 6ldo:D (2.75) BS01 KOU 4.4.1.1
    4.4.1.8    		 GO:0003824 ... F9UT53 32913258
    17 6ldo:D (2.75) BS02 KOU 4.4.1.1
    4.4.1.8    		 GO:0003824 ... F9UT53 32913258
    18 6ldo:E (2.75) BS01 KOU 4.4.1.1
    4.4.1.8    		 GO:0003824 ... F9UT53 32913258
    19 6ldo:E (2.75) BS02 KOU 4.4.1.1
    4.4.1.8    		 GO:0003824 ... F9UT53 32913258
    20 6ldo:F (2.75) BS01 KOU 4.4.1.1
    4.4.1.8    		 GO:0003824 ... F9UT53 32913258
    21 6ldo:F (2.75) BS02 KOU 4.4.1.1
    4.4.1.8    		 GO:0003824 ... F9UT53 32913258
    22 6wdu:B (1.4) BS01 KOU 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    23 6xsy:B (1.55) BS01 KOU 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    24 7jmq:B (1.6) BS01 KOU 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    25 7jqw:B (1.7) BS03 KOU 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    26 7jtt:B (1.64) BS01 KOU 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    27 7k5a:B (1.5) BS01 KOU 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    28 7ki7:B (1.75) BS01 KOU 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    29 7l5h:B (1.8) BS01 KOU 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    30 9bow:A (1.8) BS02 KOU N/A N/A Q5SI56 39148791
    31 9bow:B (1.8) BS02 KOU N/A N/A Q5SI56 39148791
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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