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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2r1w:A (1.7) BS01 KDA ? GO:0046872 ... Q52L64 18272175
    2 2r1w:B (1.7) BS01 KDA ? GO:0002250 ... A2NU21 18272175
    3 2r1x:A (1.6) BS01 KDA ? GO:0046872 ... Q52L64 18272175 PDBbind: -logKd/Ki=4.80, Kd=16uM
    4 2r1x:B (1.6) BS01 KDA ? GO:0002250 ... A2NU21 18272175 PDBbind: -logKd/Ki=4.80, Kd=16uM
    5 2r23:B (1.65) BS01 KDA N/A N/A N/A 18272175
    6 3bpc:A (1.85) BS01 KDA N/A N/A N/A 18272175 PDBbind: -logKd/Ki=4.80, Kd=16uM
    7 3bpc:B (1.85) BS01 KDA N/A N/A N/A 18272175 PDBbind: -logKd/Ki=4.80, Kd=16uM
    8 3hzy:A (2.1) BS01 KDA N/A N/A N/A 20000757 PDBbind: -logKd/Ki=7.00, Kd=0.1uM
    9 3okl:B (1.8) BS01 KDA N/A N/A N/A 21405106
    10 3t65:B (1.45) BS01 KDA N/A N/A N/A 14625588
    11 4m7j:H (1.95) BS01 KDA N/A N/A N/A 24682362 PDBbind: -logKd/Ki=6.11, Kd=0.781uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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