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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 390 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6a2w:A (1.8) BS14 KC1 ? GO:0009416 ... B7FRW2 30733387
    2 6jlu:0 (3.02) BS15 KC1 N/A N/A N/A 31371578
    3 6jlu:1 (3.02) BS13 KC1 N/A GO:0009765 ... N/A 31371578
    4 6jlu:10 (3.02) BS14 KC1 N/A N/A N/A 31371578
    5 6jlu:11 (3.02) BS13 KC1 N/A GO:0009765 ... N/A 31371578
    6 6jlu:11 (3.02) BS19 KC1 N/A GO:0009765 ... N/A 31371578
    7 6jlu:12 (3.02) BS14 KC1 N/A GO:0009765 ... N/A 31371578
    8 6jlu:13 (3.02) BS12 KC1 N/A GO:0009765 ... N/A 31371578
    9 6jlu:14 (3.02) BS13 KC1 N/A GO:0009765 ... N/A 31371578
    10 6jlu:15 (3.02) BS14 KC1 N/A GO:0009765 ... N/A 31371578
    11 6jlu:16 (3.02) BS02 KC1 N/A GO:0009765 ... N/A 31371578
    12 6jlu:16 (3.02) BS16 KC1 N/A GO:0009765 ... N/A 31371578
    13 6jlu:17 (3.02) BS15 KC1 N/A GO:0009765 ... N/A 31371578
    14 6jlu:18 (3.02) BS15 KC1 N/A GO:0009765 ... N/A 31371578
    15 6jlu:19 (3.02) BS14 KC1 N/A GO:0009765 ... N/A 31371578
    16 6jlu:2 (3.02) BS14 KC1 N/A GO:0009765 ... N/A 31371578
    17 6jlu:3 (3.02) BS14 KC1 N/A GO:0009765 ... N/A 31371578
    18 6jlu:4 (3.02) BS15 KC1 N/A GO:0009765 ... N/A 31371578
    19 6jlu:5 (3.02) BS14 KC1 N/A GO:0009765 ... N/A 31371578
    20 6jlu:6 (3.02) BS02 KC1 N/A GO:0009765 ... N/A 31371578
    21 6jlu:6 (3.02) BS17 KC1 N/A GO:0009765 ... N/A 31371578
    22 6jlu:7 (3.02) BS03 KC1 N/A GO:0009765 ... N/A 31371578
    23 6jlu:7 (3.02) BS17 KC1 N/A GO:0009765 ... N/A 31371578
    24 6jlu:8 (3.02) BS03 KC1 N/A GO:0009765 ... N/A 31371578
    25 6jlu:8 (3.02) BS16 KC1 N/A GO:0009765 ... N/A 31371578
    26 6jlu:9 (3.02) BS14 KC1 N/A GO:0009765 ... N/A 31371578
    27 6jlu:P (3.02) BS09 KC1 N/A GO:0009765 ... N/A 31371578
    28 6jlu:p (3.02) BS09 KC1 N/A GO:0009765 ... N/A 31371578
    29 6l4t:10 (2.6) BS01 KC1 N/A GO:0009765 ... N/A N/A
    30 6l4t:10 (2.6) BS02 KC1 N/A GO:0009765 ... N/A N/A
    31 6l4t:10 (2.6) BS09 KC1 N/A GO:0009765 ... N/A N/A
    32 6l4t:10 (2.6) BS13 KC1 N/A GO:0009765 ... N/A N/A
    33 6l4t:10 (2.6) BS15 KC1 N/A GO:0009765 ... N/A N/A
    34 6l4t:11 (2.6) BS01 KC1 N/A GO:0009765 ... N/A N/A
    35 6l4t:11 (2.6) BS03 KC1 N/A GO:0009765 ... N/A N/A
    36 6l4t:11 (2.6) BS05 KC1 N/A GO:0009765 ... N/A N/A
    37 6l4t:11 (2.6) BS09 KC1 N/A GO:0009765 ... N/A N/A
    38 6l4t:11 (2.6) BS10 KC1 N/A GO:0009765 ... N/A N/A
    39 6l4t:12 (2.6) BS04 KC1 N/A GO:0009765 ... N/A N/A
    40 6l4t:12 (2.6) BS08 KC1 N/A GO:0009765 ... N/A N/A
    41 6l4t:12 (2.6) BS10 KC1 N/A GO:0009765 ... N/A N/A
    42 6l4t:12 (2.6) BS12 KC1 N/A GO:0009765 ... N/A N/A
    43 6l4t:13 (2.6) BS06 KC1 N/A GO:0009765 ... N/A N/A
    44 6l4t:13 (2.6) BS07 KC1 N/A GO:0009765 ... N/A N/A
    45 6l4t:13 (2.6) BS09 KC1 N/A GO:0009765 ... N/A N/A
    46 6l4t:13 (2.6) BS11 KC1 N/A GO:0009765 ... N/A N/A
    47 6l4t:13 (2.6) BS12 KC1 N/A GO:0009765 ... N/A N/A
    48 6l4t:13 (2.6) BS13 KC1 N/A GO:0009765 ... N/A N/A
    49 6l4t:13 (2.6) BS17 KC1 N/A GO:0009765 ... N/A N/A
    50 6l4t:14 (2.6) BS07 KC1 N/A GO:0009765 ... N/A N/A
    51 6l4t:14 (2.6) BS09 KC1 N/A GO:0009765 ... N/A N/A
    52 6l4t:14 (2.6) BS12 KC1 N/A GO:0009765 ... N/A N/A
    53 6l4t:16 (2.6) BS01 KC1 N/A GO:0009765 ... N/A N/A
    54 6l4t:16 (2.6) BS05 KC1 N/A GO:0009765 ... N/A N/A
    55 6l4t:16 (2.6) BS12 KC1 N/A GO:0009765 ... N/A N/A
    56 6l4t:6 (2.6) BS05 KC1 N/A GO:0009765 ... N/A N/A
    57 6l4t:6 (2.6) BS08 KC1 N/A GO:0009765 ... N/A N/A
    58 6l4t:6 (2.6) BS09 KC1 N/A GO:0009765 ... N/A N/A
    59 6l4t:6 (2.6) BS10 KC1 N/A GO:0009765 ... N/A N/A
    60 6l4t:7 (2.6) BS07 KC1 N/A GO:0009765 ... N/A N/A
    61 6l4t:7 (2.6) BS12 KC1 N/A GO:0009765 ... N/A N/A
    62 6l4t:8 (2.6) BS03 KC1 N/A GO:0009765 ... N/A N/A
    63 6l4t:8 (2.6) BS10 KC1 N/A GO:0009765 ... N/A N/A
    64 6l4t:8 (2.6) BS11 KC1 N/A GO:0009765 ... N/A N/A
    65 6l4t:8 (2.6) BS14 KC1 N/A GO:0009765 ... N/A N/A
    66 6l4t:8 (2.6) BS15 KC1 N/A GO:0009765 ... N/A N/A
    67 6l4t:8 (2.6) BS16 KC1 N/A GO:0009765 ... N/A N/A
    68 6l4t:8 (2.6) BS17 KC1 N/A GO:0009765 ... N/A N/A
    69 6l4t:8 (2.6) BS18 KC1 N/A GO:0009765 ... N/A N/A
    70 6l4u:1 (2.4) BS08 KC1 N/A GO:0009765 ... N/A N/A
    71 6l4u:1 (2.4) BS10 KC1 N/A GO:0009765 ... N/A N/A
    72 6l4u:10 (2.4) BS01 KC1 N/A GO:0009765 ... N/A N/A
    73 6l4u:10 (2.4) BS02 KC1 N/A GO:0009765 ... N/A N/A
    74 6l4u:10 (2.4) BS08 KC1 N/A GO:0009765 ... N/A N/A
    75 6l4u:10 (2.4) BS12 KC1 N/A GO:0009765 ... N/A N/A
    76 6l4u:10 (2.4) BS14 KC1 N/A GO:0009765 ... N/A N/A
    77 6l4u:11 (2.4) BS01 KC1 N/A GO:0009765 ... N/A N/A
    78 6l4u:11 (2.4) BS03 KC1 N/A GO:0009765 ... N/A N/A
    79 6l4u:11 (2.4) BS05 KC1 N/A GO:0009765 ... N/A N/A
    80 6l4u:11 (2.4) BS09 KC1 N/A GO:0009765 ... N/A N/A
    81 6l4u:11 (2.4) BS10 KC1 N/A GO:0009765 ... N/A N/A
    82 6l4u:12 (2.4) BS04 KC1 N/A GO:0009765 ... N/A N/A
    83 6l4u:12 (2.4) BS08 KC1 N/A GO:0009765 ... N/A N/A
    84 6l4u:12 (2.4) BS10 KC1 N/A GO:0009765 ... N/A N/A
    85 6l4u:12 (2.4) BS12 KC1 N/A GO:0009765 ... N/A N/A
    86 6l4u:13 (2.4) BS07 KC1 N/A GO:0009765 ... N/A N/A
    87 6l4u:13 (2.4) BS08 KC1 N/A GO:0009765 ... N/A N/A
    88 6l4u:13 (2.4) BS10 KC1 N/A GO:0009765 ... N/A N/A
    89 6l4u:13 (2.4) BS12 KC1 N/A GO:0009765 ... N/A N/A
    90 6l4u:13 (2.4) BS13 KC1 N/A GO:0009765 ... N/A N/A
    91 6l4u:13 (2.4) BS14 KC1 N/A GO:0009765 ... N/A N/A
    92 6l4u:13 (2.4) BS18 KC1 N/A GO:0009765 ... N/A N/A
    93 6l4u:14 (2.4) BS07 KC1 N/A GO:0009765 ... N/A N/A
    94 6l4u:14 (2.4) BS09 KC1 N/A GO:0009765 ... N/A N/A
    95 6l4u:14 (2.4) BS12 KC1 N/A GO:0009765 ... N/A N/A
    96 6l4u:16 (2.4) BS01 KC1 N/A GO:0009765 ... N/A N/A
    97 6l4u:16 (2.4) BS05 KC1 N/A GO:0009765 ... N/A N/A
    98 6l4u:16 (2.4) BS12 KC1 N/A GO:0009765 ... N/A N/A
    99 6l4u:2 (2.4) BS02 KC1 N/A GO:0009765 ... N/A N/A
    100 6l4u:2 (2.4) BS07 KC1 N/A GO:0009765 ... N/A N/A
    101 6l4u:2 (2.4) BS13 KC1 N/A GO:0009765 ... N/A N/A
    102 6l4u:2 (2.4) BS15 KC1 N/A GO:0009765 ... N/A N/A
    103 6l4u:3 (2.4) BS04 KC1 N/A GO:0009765 ... N/A N/A
    104 6l4u:3 (2.4) BS10 KC1 N/A GO:0009765 ... N/A N/A
    105 6l4u:4 (2.4) BS09 KC1 N/A GO:0009765 ... N/A N/A
    106 6l4u:4 (2.4) BS10 KC1 N/A GO:0009765 ... N/A N/A
    107 6l4u:4 (2.4) BS12 KC1 N/A GO:0009765 ... N/A N/A
    108 6l4u:5 (2.4) BS01 KC1 N/A GO:0009765 ... N/A N/A
    109 6l4u:5 (2.4) BS05 KC1 N/A GO:0009765 ... N/A N/A
    110 6l4u:5 (2.4) BS06 KC1 N/A GO:0009765 ... N/A N/A
    111 6l4u:5 (2.4) BS10 KC1 N/A GO:0009765 ... N/A N/A
    112 6l4u:5 (2.4) BS12 KC1 N/A GO:0009765 ... N/A N/A
    113 6l4u:6 (2.4) BS01 KC1 N/A GO:0009765 ... N/A N/A
    114 6l4u:6 (2.4) BS07 KC1 N/A GO:0009765 ... N/A N/A
    115 6l4u:6 (2.4) BS10 KC1 N/A GO:0009765 ... N/A N/A
    116 6l4u:6 (2.4) BS11 KC1 N/A GO:0009765 ... N/A N/A
    117 6l4u:6 (2.4) BS12 KC1 N/A GO:0009765 ... N/A N/A
    118 6l4u:7 (2.4) BS08 KC1 N/A GO:0009765 ... N/A N/A
    119 6l4u:7 (2.4) BS13 KC1 N/A GO:0009765 ... N/A N/A
    120 6l4u:8 (2.4) BS03 KC1 N/A GO:0009765 ... N/A N/A
    121 6l4u:8 (2.4) BS10 KC1 N/A GO:0009765 ... N/A N/A
    122 6l4u:8 (2.4) BS11 KC1 N/A GO:0009765 ... N/A N/A
    123 6l4u:8 (2.4) BS14 KC1 N/A GO:0009765 ... N/A N/A
    124 6l4u:8 (2.4) BS15 KC1 N/A GO:0009765 ... N/A N/A
    125 6l4u:8 (2.4) BS16 KC1 N/A GO:0009765 ... N/A N/A
    126 6l4u:8 (2.4) BS17 KC1 N/A GO:0009765 ... N/A N/A
    127 6l4u:8 (2.4) BS18 KC1 N/A GO:0009765 ... N/A N/A
    128 6l4u:9 (2.4) BS01 KC1 N/A GO:0009765 ... N/A N/A
    129 6l4u:9 (2.4) BS03 KC1 N/A GO:0009765 ... N/A N/A
    130 6l4u:9 (2.4) BS09 KC1 N/A GO:0009765 ... N/A N/A
    131 6l4u:9 (2.4) BS10 KC1 N/A GO:0009765 ... N/A N/A
    132 6l4u:9 (2.4) BS11 KC1 N/A GO:0009765 ... N/A N/A
    133 6ly5:A (2.38) BS12 KC1 ? GO:0009765 ... A0A6J4B7P2 33033236
    134 6ly5:B (2.38) BS09 KC1 ? N/A A0A1E7F4Y9 33033236
    135 6ly5:C (2.38) BS11 KC1 ? GO:0009765 ... A0A6J4B024 33033236
    136 6ly5:D (2.38) BS14 KC1 ? GO:0009765 ... A0A6J4B112 33033236
    137 6ly5:E (2.38) BS08 KC1 ? GO:0009765 ... A0A6J4B3M5 33033236
    138 6ly5:F (2.38) BS08 KC1 ? GO:0009765 ... A0A6J4B492 33033236
    139 6ly5:F (2.38) BS15 KC1 ? GO:0009765 ... A0A6J4B492 33033236
    140 6ly5:G (2.38) BS08 KC1 ? GO:0009765 ... A0A6J4B0A4 33033236
    141 6ly5:G (2.38) BS17 KC1 ? GO:0009765 ... A0A6J4B0A4 33033236
    142 6ly5:G (2.38) BS18 KC1 ? GO:0009765 ... A0A6J4B0A4 33033236
    143 6ly5:H (2.38) BS14 KC1 ? GO:0009765 ... B8C0K4 33033236
    144 6ly5:J (2.38) BS14 KC1 ? GO:0009765 ... A0A6J4B2D5 33033236
    145 6ly5:K (2.38) BS01 KC1 ? GO:0009765 ... A0A6J4B0S3 33033236
    146 6ly5:K (2.38) BS02 KC1 ? GO:0009765 ... A0A6J4B0S3 33033236
    147 6ly5:K (2.38) BS16 KC1 ? GO:0009765 ... A0A6J4B0S3 33033236
    148 6ly5:L (2.38) BS11 KC1 ? GO:0009765 ... A0A6J4B037 33033236
    149 6ly5:L (2.38) BS13 KC1 ? GO:0009765 ... A0A6J4B037 33033236
    150 6ly5:M (2.38) BS13 KC1 ? GO:0009765 ... A0A6J4B2D8 33033236
    151 6ly5:M (2.38) BS17 KC1 ? GO:0009765 ... A0A6J4B2D8 33033236
    152 6ly5:M (2.38) BS18 KC1 ? GO:0009765 ... A0A6J4B2D8 33033236
    153 6ly5:N (2.38) BS13 KC1 ? GO:0009416 ... A0A6J4B7P8 33033236
    154 6ly5:O (2.38) BS14 KC1 ? GO:0009765 ... A0A6J4B125 33033236
    155 6ly5:O (2.38) BS16 KC1 ? GO:0009765 ... A0A6J4B125 33033236
    156 6ly5:P (2.38) BS14 KC1 ? GO:0009765 ... A0A6J4B125 33033236
    157 6ly5:P (2.38) BS16 KC1 ? GO:0009765 ... A0A6J4B125 33033236
    158 6ly5:Q (2.38) BS13 KC1 ? GO:0009765 ... A0A6J4B125 33033236
    159 6ly5:Q (2.38) BS15 KC1 ? GO:0009765 ... A0A6J4B125 33033236
    160 6ly5:R (2.38) BS16 KC1 ? GO:0009765 ... A0A6J4B499 33033236
    161 6ly5:S (2.38) BS17 KC1 ? GO:0009765 ... A0A6J4B7P8 33033236
    162 6ly5:T (2.38) BS09 KC1 N/A GO:0009765 ... N/A 33033236
    163 6ly5:T (2.38) BS14 KC1 N/A GO:0009765 ... N/A 33033236
    164 6ly5:U (2.38) BS11 KC1 N/A GO:0009765 ... N/A 33033236
    165 6ly5:V (2.38) BS13 KC1 N/A GO:0009765 ... N/A 33033236
    166 6ly5:W (2.38) BS16 KC1 ? GO:0009765 ... B7FRW2 33033236
    167 6ly5:X (2.38) BS12 KC1 ? GO:0009765 ... B7FRW2 33033236
    168 7vd5:11 (2.5) BS02 KC1 ? GO:0009416 ... A0A679BXP6 N/A
    169 7vd5:11 (2.5) BS04 KC1 ? GO:0009416 ... A0A679BXP6 N/A
    170 7vd5:11 (2.5) BS06 KC1 ? GO:0009416 ... A0A679BXP6 N/A
    171 7vd5:11 (2.5) BS09 KC1 ? GO:0009416 ... A0A679BXP6 N/A
    172 7vd5:12 (2.5) BS07 KC1 N/A GO:0009765 ... N/A N/A
    173 7vd5:12 (2.5) BS09 KC1 N/A GO:0009765 ... N/A N/A
    174 7vd5:12 (2.5) BS12 KC1 N/A GO:0009765 ... N/A N/A
    175 7vd5:13 (2.5) BS05 KC1 ? GO:0009765 ... A0A679BXP6 N/A
    176 7vd5:13 (2.5) BS07 KC1 ? GO:0009765 ... A0A679BXP6 N/A
    177 7vd5:13 (2.5) BS09 KC1 ? GO:0009765 ... A0A679BXP6 N/A
    178 7vd5:13 (2.5) BS12 KC1 ? GO:0009765 ... A0A679BXP6 N/A
    179 7vd5:14 (2.5) BS06 KC1 ? GO:0009416 ... A0A679BXP6 N/A
    180 7vd5:14 (2.5) BS08 KC1 ? GO:0009416 ... A0A679BXP6 N/A
    181 7vd5:14 (2.5) BS11 KC1 ? GO:0009416 ... A0A679BXP6 N/A
    182 7vd5:15 (2.5) BS02 KC1 ? GO:0009765 ... A0A679BXP6 N/A
    183 7vd5:15 (2.5) BS04 KC1 ? GO:0009765 ... A0A679BXP6 N/A
    184 7vd5:15 (2.5) BS06 KC1 ? GO:0009765 ... A0A679BXP6 N/A
    185 7vd5:15 (2.5) BS09 KC1 ? GO:0009765 ... A0A679BXP6 N/A
    186 7vd5:16 (2.5) BS05 KC1 N/A GO:0009765 ... N/A N/A
    187 7vd5:16 (2.5) BS07 KC1 N/A GO:0009765 ... N/A N/A
    188 7vd5:16 (2.5) BS08 KC1 N/A GO:0009765 ... N/A N/A
    189 7vd5:16 (2.5) BS11 KC1 N/A GO:0009765 ... N/A N/A
    190 7vd5:17 (2.5) BS04 KC1 N/A GO:0009765 ... N/A N/A
    191 7vd5:17 (2.5) BS06 KC1 N/A GO:0009765 ... N/A N/A
    192 7vd5:17 (2.5) BS07 KC1 N/A GO:0009765 ... N/A N/A
    193 7vd5:17 (2.5) BS09 KC1 N/A GO:0009765 ... N/A N/A
    194 7vd5:18 (2.5) BS08 KC1 ? GO:0009765 ... A0A679BXP6 N/A
    195 7vd5:18 (2.5) BS10 KC1 ? GO:0009765 ... A0A679BXP6 N/A
    196 7vd5:18 (2.5) BS13 KC1 ? GO:0009765 ... A0A679BXP6 N/A
    197 7vd5:19 (2.5) BS10 KC1 N/A GO:0009765 ... N/A N/A
    198 7vd5:20 (2.5) BS04 KC1 N/A N/A N/A N/A
    199 7vd5:20 (2.5) BS06 KC1 N/A N/A N/A N/A
    200 7vd5:20 (2.5) BS07 KC1 N/A N/A N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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