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BioLiP
Download all results in tab-seperated text for 86 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1kny:A (2.5) BS03 KAN 2.7.7.- GO:0016740 ... P05057 7577914
    2 1kny:A (2.5) BS04 KAN 2.7.7.- GO:0016740 ... P05057 7577914
    3 1kny:B (2.5) BS03 KAN 2.7.7.- GO:0016740 ... P05057 7577914
    4 1l8t:A (2.4) BS03 KAN 2.7.1.95 GO:0005524 ... P0A3Y5 12006485
    5 1m4i:A (1.5) BS02 KAN 2.3.1.- GO:0005886 ... P9WQG9 12161746
    6 1m4i:B (1.5) BS02 KAN 2.3.1.- GO:0005886 ... P9WQG9 12161746
    7 1nd4:A (2.1) BS02 KAN 2.7.1.95 GO:0005524 ... P00552 12628253
    8 1nd4:B (2.1) BS02 KAN 2.7.1.95 GO:0005524 ... P00552 12628253
    9 3kp5:A (3.0) BS01 KAN ? GO:0003700 ... Q5HLN6 20421503
    10 3kp5:B (3.0) BS01 KAN ? GO:0003700 ... Q5HLN6 20421503
    11 3kp5:B (3.0) BS02 KAN ? GO:0003700 ... Q5HLN6 20421503
    12 3q5r:A (3.05) BS02 KAN ? GO:0003677 ... P39075 21690368
    13 3sg9:A (2.15) BS01 KAN ? GO:0000166 ... O68183 21678960
    14 3sg9:B (2.15) BS01 KAN ? GO:0000166 ... O68183 21678960
    15 3u6t:A (1.85) BS01 KAN 3.2.2.22 GO:0000166 ... D9J2T9 N/A
    16 4dfb:A (1.95) BS01 KAN ? GO:0000166 ... O68183 22195561 PDBbind: -logKd/Ki=4.60, Ki=25uM
    17 4dfb:B (1.95) BS01 KAN ? GO:0000166 ... O68183 22195561
    18 4dfu:A (1.98) BS01 KAN ? GO:0000166 ... O68183 22195561
    19 4dfu:B (1.98) BS02 KAN ? GO:0000166 ... O68183 22195561
    20 4em0:B (2.9) BS01 KAN ? GO:0003677 ... Q6GEG9 N/A
    21 4feu:A (2.37) BS01 KAN N/A GO:0005524 ... N/A 23758273
    22 4feu:B (2.37) BS01 KAN N/A GO:0005524 ... N/A 23758273
    23 4feu:B (2.37) BS02 KAN N/A GO:0005524 ... N/A 23758273
    24 4feu:C (2.37) BS01 KAN N/A GO:0005524 ... N/A 23758273
    25 4feu:D (2.37) BS01 KAN N/A GO:0005524 ... N/A 23758273
    26 4feu:E (2.37) BS01 KAN N/A GO:0005524 ... N/A 23758273
    27 4feu:F (2.37) BS01 KAN N/A GO:0005524 ... N/A 23758273
    28 4fev:A (1.89) BS01 KAN N/A GO:0005524 ... N/A 23758273
    29 4fev:B (1.89) BS01 KAN N/A GO:0005524 ... N/A 23758273
    30 4fev:C (1.89) BS01 KAN N/A GO:0005524 ... N/A 23758273
    31 4fev:D (1.89) BS01 KAN N/A GO:0005524 ... N/A 23758273
    32 4fev:D (1.89) BS02 KAN N/A GO:0005524 ... N/A 23758273
    33 4fev:E (1.89) BS01 KAN N/A GO:0005524 ... N/A 23758273
    34 4fev:F (1.89) BS01 KAN N/A GO:0005524 ... N/A 23758273
    35 4few:A (1.98) BS01 KAN N/A GO:0005524 ... N/A 23758273
    36 4few:B (1.98) BS01 KAN N/A GO:0005524 ... N/A 23758273
    37 4few:C (1.98) BS01 KAN N/A GO:0005524 ... N/A 23758273
    38 4few:D (1.98) BS01 KAN N/A GO:0005524 ... N/A 23758273
    39 4few:D (1.98) BS02 KAN N/A GO:0005524 ... N/A 23758273
    40 4few:E (1.98) BS01 KAN N/A GO:0005524 ... N/A 23758273
    41 4few:F (1.98) BS01 KAN N/A GO:0005524 ... N/A 23758273
    42 4few:F (1.98) BS02 KAN N/A GO:0005524 ... N/A 23758273
    43 4fex:A (2.71) BS01 KAN N/A GO:0005524 ... N/A 23758273
    44 4fex:B (2.71) BS01 KAN N/A GO:0005524 ... N/A 23758273
    45 4fex:C (2.71) BS01 KAN N/A GO:0005524 ... N/A 23758273
    46 4fex:D (2.71) BS01 KAN N/A GO:0005524 ... N/A 23758273
    47 4fex:E (2.71) BS01 KAN N/A GO:0005524 ... N/A 23758273
    48 4gkh:A (1.863) BS01 KAN N/A GO:0005524 ... N/A 23758273
    49 4gkh:B (1.863) BS01 KAN N/A GO:0005524 ... N/A 23758273
    50 4gkh:B (1.863) BS02 KAN N/A GO:0005524 ... N/A 23758273
    51 4gkh:C (1.863) BS01 KAN N/A GO:0005524 ... N/A 23758273
    52 4gkh:D (1.863) BS02 KAN N/A GO:0005524 ... N/A 23758273
    53 4gkh:E (1.863) BS01 KAN N/A GO:0005524 ... N/A 23758273
    54 4gkh:F (1.863) BS01 KAN N/A GO:0005524 ... N/A 23758273
    55 4gkh:F (1.863) BS02 KAN N/A GO:0005524 ... N/A 23758273
    56 4gkh:G (1.863) BS01 KAN N/A GO:0005524 ... N/A 23758273
    57 4gkh:H (1.863) BS01 KAN N/A GO:0005524 ... N/A 23758273
    58 4gkh:I (1.863) BS01 KAN N/A GO:0005524 ... N/A 23758273
    59 4gkh:J (1.863) BS01 KAN N/A GO:0005524 ... N/A 23758273
    60 4gkh:K (1.863) BS01 KAN N/A GO:0005524 ... N/A 23758273
    61 4gkh:L (1.863) BS01 KAN N/A GO:0005524 ... N/A 23758273
    62 4gki:A (1.88) BS01 KAN N/A GO:0005524 ... N/A 23758273
    63 4gki:A (1.88) BS03 KAN N/A GO:0005524 ... N/A 23758273
    64 4gki:B (1.88) BS01 KAN N/A GO:0005524 ... N/A 23758273
    65 4gki:C (1.88) BS01 KAN N/A GO:0005524 ... N/A 23758273
    66 4gki:D (1.88) BS01 KAN N/A GO:0005524 ... N/A 23758273
    67 4gki:E (1.88) BS01 KAN N/A GO:0005524 ... N/A 23758273
    68 4gki:F (1.88) BS01 KAN N/A GO:0005524 ... N/A 23758273
    69 4gki:G (1.88) BS01 KAN N/A GO:0005524 ... N/A 23758273
    70 4gki:G (1.88) BS03 KAN N/A GO:0005524 ... N/A 23758273
    71 4gki:H (1.88) BS01 KAN N/A GO:0005524 ... N/A 23758273
    72 4gki:I (1.88) BS01 KAN N/A GO:0005524 ... N/A 23758273
    73 4gki:J (1.88) BS01 KAN N/A GO:0005524 ... N/A 23758273
    74 4gki:K (1.88) BS01 KAN N/A GO:0005524 ... N/A 23758273
    75 4gki:L (1.88) BS01 KAN N/A GO:0005524 ... N/A 23758273
    76 4okn:B (2.1) BS02 KAN 1.1.1.27 GO:0003824 ... P00338 25664730
    77 4qc6:A (1.3) BS01 KAN 2.3.1.-
    2.7.1.190    		 GO:0016747 ... Q7ATH7 25286858
    78 4qc6:B (1.3) BS01 KAN 2.3.1.-
    2.7.1.190    		 GO:0016747 ... Q7ATH7 25286858
    79 4wql:A (1.73) BS03 KAN 2.7.7.46 GO:0008871 ... P0AE05 25564464
    80 5iqb:A (2.3) BS02 KAN 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    81 5iqb:B (2.3) BS02 KAN 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    82 5iqb:C (2.3) BS02 KAN 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    83 5iqb:D (2.3) BS02 KAN 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    84 6bfh:A (1.95) BS01 KAN ? GO:0016410 ... Q93ET8 29234669
    85 6ctz:A (1.34) BS03 KAN ? GO:0046872 ... P96762 N/A
    86 6o5u:A (1.4) BS01 KAN 2.3.1.81 GO:0008080 ... Q47030 31515870 MOAD: Kd=42uM
    PDBbind: -logKd/Ki=4.38, Kd=42uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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