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BioLiP
Download all results in tab-seperated text for 10 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3o99:A (1.95) BS01 K13 3.1.26.13 GO:0004190 ... Q90K99 24012370 PDBbind: -logKd/Ki=10.82, Ki=15pM
    2 3o99:B (1.95) BS01 K13 3.1.26.13 GO:0004190 ... Q90K99 24012370 PDBbind: -logKd/Ki=10.82, Ki=15pM
    3 6dgy:A (1.954) BS01 K13 ? GO:0004190 ... Q7ZCR0 30543749 MOAD: Ki<5pM
    PDBbind: -logKd/Ki=11.30, Ki<5pM
    4 6dgy:B (1.954) BS01 K13 ? GO:0004190 ... Q7ZCR0 30543749 PDBbind: -logKd/Ki=11.30, Ki<5pM
    5 6dh1:A (1.971) BS01 K13 ? GO:0004190 ... Q7ZCI0 30543749 MOAD: Ki=26.1pM
    PDBbind: -logKd/Ki=10.58, Ki=26.1pM
    6 6dh1:B (1.971) BS01 K13 ? GO:0004190 ... Q7ZCI0 30543749 PDBbind: -logKd/Ki=10.58, Ki=26.1pM
    7 6dh4:A (1.943) BS01 K13 ? GO:0004190 ... Q6B6C5 30543749 MOAD: Ki<5pM
    PDBbind: -logKd/Ki=11.30, Ki<5pM
    8 6dh4:B (1.943) BS01 K13 ? GO:0004190 ... Q6B6C5 30543749 PDBbind: -logKd/Ki=11.30, Ki<5pM
    9 6dh7:A (1.997) BS01 K13 ? GO:0004190 ... Q7ZCR0 30543749 MOAD: Ki=131.3pM
    PDBbind: -logKd/Ki=9.88, Ki=131.3pM
    10 6dh7:B (1.997) BS01 K13 ? GO:0004190 ... Q7ZCR0 30543749 PDBbind: -logKd/Ki=9.88, Ki=131.3pM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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