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BioLiP
Download all results in tab-seperated text for 23 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3tru:D (3.2) BS01 ISJ ? GO:0001818 ... Q9GK12 N/A
    2 3zp7:A (1.698) BS02 ISJ 5.4.99.5 GO:0004106 ... P19080 25422475
    3 3zp7:A (1.698) BS04 ISJ 5.4.99.5 GO:0004106 ... P19080 25422475
    4 3zp7:B (1.698) BS02 ISJ 5.4.99.5 GO:0004106 ... P19080 25422475
    5 3zp7:B (1.698) BS04 ISJ 5.4.99.5 GO:0004106 ... P19080 25422475
    6 3zp7:C (1.698) BS02 ISJ 5.4.99.5 GO:0004106 ... P19080 25422475
    7 3zp7:C (1.698) BS04 ISJ 5.4.99.5 GO:0004106 ... P19080 25422475
    8 3zp7:D (1.698) BS03 ISJ 5.4.99.5 GO:0004106 ... P19080 25422475
    9 3zp7:D (1.698) BS04 ISJ 5.4.99.5 GO:0004106 ... P19080 25422475
    10 3zp7:E (1.698) BS02 ISJ 5.4.99.5 GO:0004106 ... P19080 25422475
    11 3zp7:F (1.698) BS02 ISJ 5.4.99.5 GO:0004106 ... P19080 25422475
    12 5jxz:A (1.88) BS03 ISJ 5.4.4.2 GO:0000287 ... P0AEJ3 27373320
    13 5jxz:B (1.88) BS03 ISJ 5.4.4.2 GO:0000287 ... P0AEJ3 27373320
    14 5jy8:A (2.942) BS03 ISJ 5.4.4.2 GO:0000287 ... P0AEJ3 27373320
    15 5jy8:B (2.942) BS04 ISJ 5.4.4.2 GO:0000287 ... P0AEJ3 27373320
    16 6oms:B (1.942) BS02 ISJ 6.3.2.- GO:0005515 ... Q9LYU4 31575658
    17 7an6:A (1.91) BS01 ISJ 4.2.1.151 GO:0009234 ... Q9L0T8 N/A
    18 7an6:B (1.91) BS01 ISJ 4.2.1.151 GO:0009234 ... Q9L0T8 N/A
    19 7ywc:A (1.917) BS01 ISJ 4.2.1.151 GO:0009234 ... Q9L0T8 36265588
    20 7ywc:B (1.917) BS01 ISJ 4.2.1.151 GO:0009234 ... Q9L0T8 36265588
    21 8hx9:A (2.03) BS02 ISJ 2.6.1.85 GO:0005737 ... F2RB79 37712435
    22 8w71:A (2.121) BS01 ISJ 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    23 8w71:B (2.121) BS01 ISJ 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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