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BioLiP
Download all results in tab-seperated text for 80 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1fjw:A (1.9) BS06 IPH 3.4.24.27 GO:0004222 ... P00800 11287678
    2 1fjw:A (1.9) BS07 IPH 3.4.24.27 GO:0004222 ... P00800 11287678
    3 1foh:A (2.4) BS02 IPH 1.14.13.7 GO:0004497 ... P15245 9634698
    4 1foh:B (2.4) BS02 IPH 1.14.13.7 GO:0004497 ... P15245 9634698
    5 1foh:C (2.4) BS02 IPH 1.14.13.7 GO:0004497 ... P15245 9634698
    6 1foh:D (2.4) BS02 IPH 1.14.13.7 GO:0004497 ... P15245 9634698
    7 1jhx:A (2.0) BS01 IPH 2.4.2.21 GO:0000166 ... Q05603 11441022
    8 1jhy:A (2.0) BS01 IPH 2.4.2.21 GO:0000166 ... Q05603 11441022
    9 1pn0:A (1.7) BS02 IPH 1.14.13.7 GO:0004497 ... P15245 12925790
    10 1pn0:B (1.7) BS02 IPH 1.14.13.7 GO:0004497 ... P15245 12925790
    11 1pn0:C (1.7) BS02 IPH 1.14.13.7 GO:0004497 ... P15245 12925790
    12 1pn0:D (1.7) BS02 IPH 1.14.13.7 GO:0004497 ... P15245 12925790
    13 1qiy:F (2.3) BS03 IPH ? GO:0005179 ... P01308 10508408
    14 1wav:B (2.5) BS03 IPH ? GO:0005179 ... P01315 8760462
    15 1wav:J (2.5) BS03 IPH ? GO:0005179 ... P01315 8760462
    16 1wav:L (2.5) BS03 IPH ? GO:0005179 ... P01315 8760462
    17 1zeg:B (1.6) BS02 IPH ? GO:0005179 ... P01308 9708987
    18 2as3:A (1.4) BS02 IPH 1.11.1.5 GO:0004601 ... P00431 16490206 MOAD: Kd=4.1mM
    19 2old:B (2.6) BS03 IPH N/A N/A N/A 17582169
    20 2omb:D (2.9) BS02 IPH N/A N/A N/A 17582169
    21 2pzv:A (1.25) BS01 IPH 5.3.3.1 GO:0004769 ... P07445 16602823 MOAD: Kd=135uM
    22 2pzv:B (1.25) BS01 IPH 5.3.3.1 GO:0004769 ... P07445 16602823 MOAD: Kd=135uM
    23 2pzv:C (1.25) BS01 IPH 5.3.3.1 GO:0004769 ... P07445 16602823 MOAD: Kd=135uM
    24 2pzv:D (1.25) BS01 IPH 5.3.3.1 GO:0004769 ... P07445 16602823 MOAD: Kd=135uM
    25 3aiy:B (-1.00) BS03 IPH ? GO:0005179 ... P01308 10723989
    26 3aiy:D (-1.00) BS03 IPH ? GO:0005179 ... P01308 10723989
    27 3aiy:F (-1.00) BS03 IPH ? GO:0005179 ... P01308 10723989
    28 3aiy:H (-1.00) BS03 IPH ? GO:0005179 ... P01308 10723989
    29 3aiy:J (-1.00) BS03 IPH ? GO:0005179 ... P01308 10723989
    30 3aiy:L (-1.00) BS03 IPH ? GO:0005179 ... P01308 10723989
    31 3guo:A (2.16) BS01 IPH 3.2.1.17 GO:0003796 ... P00720 19663503 MOAD: Ka=9150M^-1
    BindingDB: Kd=103000nM
    32 3guo:B (2.16) BS01 IPH 3.2.1.17 GO:0003796 ... P00720 19663503 MOAD: Ka=9150M^-1
    BindingDB: Kd=103000nM
    33 3nx8:A (2.0) BS02 IPH 2.7.11.11 GO:0000287 ... P17612 22213702
    34 3nx8:A (2.0) BS03 IPH 2.7.11.11 GO:0000287 ... P17612 22213702
    35 3nx8:A (2.0) BS04 IPH 2.7.11.11 GO:0000287 ... P17612 22213702
    36 3q3o:A (1.95) BS03 IPH 1.14.13.236 GO:0004497 ... Q00456 22264099
    37 3q3o:A (1.95) BS04 IPH 1.14.13.236 GO:0004497 ... Q00456 22264099
    38 3q3o:A (1.95) BS05 IPH 1.14.13.236 GO:0004497 ... Q00456 22264099
    39 3q3o:A (1.95) BS06 IPH 1.14.13.236 GO:0004497 ... Q00456 22264099
    40 3q3o:B (1.95) BS01 IPH 1.14.13.236 GO:0004497 ... Q00460 22264099
    41 3u3e:A (1.21) BS02 IPH 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 23192025
    42 4a71:A (1.61) BS02 IPH 1.11.1.5 GO:0004601 ... P00431 22093282
    43 4a71:A (1.61) BS03 IPH 1.11.1.5 GO:0004601 ... P00431 22093282
    44 4aiy:B (-1.00) BS03 IPH ? GO:0005179 ... P01308 10723989
    45 4aiy:D (-1.00) BS03 IPH ? GO:0005179 ... P01308 10723989
    46 4aiy:F (-1.00) BS03 IPH ? GO:0005179 ... P01308 10723989
    47 4aiy:H (-1.00) BS03 IPH ? GO:0005179 ... P01308 10723989
    48 4aiy:J (-1.00) BS03 IPH ? GO:0005179 ... P01308 10723989
    49 4aiy:L (-1.00) BS03 IPH ? GO:0005179 ... P01308 10723989
    50 4h07:A (1.14) BS02 IPH 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 23192025
    51 4hds:A (2.4) BS01 IPH 2.4.2.21 GO:0008939 ... F6MZ55 23039029
    52 5aiy:B (-1.00) BS03 IPH ? GO:0005179 ... P01308 10723989
    53 5aiy:D (-1.00) BS03 IPH ? GO:0005179 ... P01308 10723989
    54 5aiy:F (-1.00) BS03 IPH ? GO:0005179 ... P01308 10723989
    55 5aiy:H (-1.00) BS03 IPH ? GO:0005179 ... P01308 10723989
    56 5aiy:J (-1.00) BS03 IPH ? GO:0005179 ... P01308 10723989
    57 5aiy:L (-1.00) BS03 IPH ? GO:0005179 ... P01308 10723989
    58 5frw:A (2.1) BS01 IPH ? N/A O84957 27050690
    59 5frw:B (2.1) BS01 IPH ? N/A O84957 27050690
    60 5kbe:A (2.5) BS02 IPH ? N/A Q43965 27362503 MOAD: Kd=0.46uM
    PDBbind: -logKd/Ki=6.34, Kd=0.46uM
    61 5kbe:B (2.5) BS02 IPH ? N/A Q43965 27362503 MOAD: Kd=0.46uM
    62 6iy8:A (3.42) BS01 IPH ? GO:0005524 ... Q7WSM9 32483114
    63 6iy8:B (3.42) BS02 IPH ? GO:0005524 ... Q7WSM9 32483114
    64 6iy8:C (3.42) BS01 IPH ? GO:0005524 ... Q7WSM9 32483114
    65 6iy8:D (3.42) BS01 IPH ? GO:0005524 ... Q7WSM9 32483114
    66 6z44:A (1.38) BS01 IPH 2.7.11.11 GO:0000287 ... P25321 33021032
    67 7vqf:A (2.3) BS01 IPH ? N/A Q43965 35988639
    68 7wdg:A (2.07) BS03 IPH 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 36660956
    69 7wdg:A (2.07) BS06 IPH 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 36660956
    70 7wdg:A (2.07) BS07 IPH 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 36660956
    71 7wdg:B (2.07) BS03 IPH 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 36660956
    72 7wdg:B (2.07) BS06 IPH 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 36660956
    73 7wdg:B (2.07) BS07 IPH 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 36660956
    74 7wdh:A (1.68) BS04 IPH 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 36660956
    75 7wdh:A (1.68) BS05 IPH 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 36660956
    76 7wdh:A (1.68) BS06 IPH 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 36660956
    77 7wdh:A (1.68) BS07 IPH 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 36660956
    78 7wdh:B (1.68) BS04 IPH 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 36660956
    79 7wdh:B (1.68) BS05 IPH 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 36660956
    80 7wdh:B (1.68) BS06 IPH 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 36660956
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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