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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 150 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1rqj:A (1.95) BS03 IPE 2.5.1.10 GO:0004161 ... P22939 14672944
    2 1rqj:B (1.95) BS03 IPE 2.5.1.10 GO:0004161 ... P22939 14672944
    3 1x07:A (2.2) BS02 IPE 2.5.1.31 GO:0000287 ... P60472 15788389 MOAD: Kd=520uM
    PDBbind: -logKd/Ki=3.28, Kd=520uM
    4 1x09:A (1.87) BS01 IPE 2.5.1.31 GO:0000287 ... P60472 15788389 MOAD: Kd=520uM
    5 1x09:A (1.87) BS02 IPE 2.5.1.31 GO:0000287 ... P60472 15788389 MOAD: Kd=520uM
    6 1yhm:A (2.5) BS04 IPE 2.5.1.10 GO:0004659 ... Q8WS26 16288456
    7 1yhm:B (2.5) BS04 IPE 2.5.1.10 GO:0004659 ... Q8WS26 16288456
    8 1yhm:C (2.5) BS04 IPE 2.5.1.10 GO:0004659 ... Q8WS26 16288456
    9 1zw5:A (2.3) BS03 IPE 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 16684881
    10 2e8t:A (2.13) BS03 IPE 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... Q12051 17535895
    11 2e8t:B (2.13) BS03 IPE 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... Q12051 17535895
    12 2e8u:A (2.08) BS03 IPE 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... Q12051 17535895
    13 2e8u:A (2.08) BS04 IPE 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... Q12051 17535895
    14 2e8u:B (2.08) BS03 IPE 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... Q12051 17535895
    15 2e8u:B (2.08) BS04 IPE 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... Q12051 17535895
    16 2e8w:A (2.35) BS03 IPE 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... Q12051 17535895
    17 2e8w:B (2.35) BS03 IPE 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... Q12051 17535895
    18 2e8w:B (2.35) BS04 IPE 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... Q12051 17535895
    19 2f8z:F (2.6) BS03 IPE 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 16892359
    20 2uzh:A (2.2) BS03 IPE 4.6.1.12 GO:0000166 ... A0R559 17956607
    21 2uzh:B (2.2) BS03 IPE 4.6.1.12 GO:0000166 ... A0R559 17956607
    22 2uzh:C (2.2) BS03 IPE 4.6.1.12 GO:0000166 ... A0R559 17956607
    23 2vg2:A (1.95) BS02 IPE 2.5.1.86
    2.5.1.87    		 GO:0000287 ... P9WFF7 18597781
    24 2vg2:B (1.95) BS02 IPE 2.5.1.86
    2.5.1.87    		 GO:0000287 ... P9WFF7 18597781
    25 2vg2:C (1.95) BS01 IPE 2.5.1.86
    2.5.1.87    		 GO:0000287 ... P9WFF7 18597781
    26 2vg2:D (1.95) BS01 IPE 2.5.1.86
    2.5.1.87    		 GO:0000287 ... P9WFF7 18597781
    27 2zev:B (2.23) BS03 IPE 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... Q12051 19309137
    28 2zry:A (2.64) BS02 IPE 5.3.3.2 GO:0000287 ... P61615 19158086
    29 2zry:B (2.64) BS02 IPE 5.3.3.2 GO:0000287 ... P61615 19158086
    30 2zry:C (2.64) BS02 IPE 5.3.3.2 GO:0000287 ... P61615 19158086
    31 2zry:D (2.64) BS02 IPE 5.3.3.2 GO:0000287 ... P61615 19158086
    32 3b05:A (2.2) BS02 IPE 5.3.3.2 GO:0000287 ... P61615 22158896
    33 3b05:B (2.2) BS02 IPE 5.3.3.2 GO:0000287 ... P61615 22158896
    34 3b05:C (2.2) BS02 IPE 5.3.3.2 GO:0000287 ... P61615 22158896
    35 3b05:D (2.2) BS02 IPE 5.3.3.2 GO:0000287 ... P61615 22158896
    36 3ez3:A (2.304) BS02 IPE ? GO:0004161 ... A5K4U6 N/A
    37 3ez3:B (2.304) BS02 IPE ? GO:0004161 ... A5K4U6 N/A
    38 3ez3:C (2.304) BS02 IPE ? GO:0004161 ... A5K4U6 N/A
    39 3ez3:D (2.304) BS02 IPE ? GO:0004161 ... A5K4U6 N/A
    40 3iba:A (2.4) BS04 IPE 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    41 3ick:A (2.4) BS02 IPE 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    42 3icm:A (2.2) BS02 IPE 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    43 3icn:A (2.4) BS04 IPE 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    44 3icz:A (2.15) BS01 IPE 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    45 3k4y:A (2.54) BS01 IPE 2.7.4.26 GO:0005524 ... Q60352 20392112
    46 3k4y:B (2.54) BS01 IPE 2.7.4.26 GO:0005524 ... Q60352 20392112
    47 3ke9:A (1.9) BS02 IPE 1.17.7.4 GO:0005829 ... P62623 20080550
    48 3ke9:B (1.9) BS02 IPE 1.17.7.4 GO:0005829 ... P62623 20080550
    49 3kem:A (2.0) BS01 IPE 1.17.7.4 GO:0005829 ... P62623 20080550
    50 3kem:B (2.0) BS01 IPE 1.17.7.4 GO:0005829 ... P62623 20080550
    51 3krc:A (2.3) BS01 IPE 2.5.1.1 GO:0004659 ... Q9SBR3 20139160
    52 3krc:D (2.3) BS01 IPE 2.5.1.1 GO:0004659 ... Q9SBR3 20139160
    53 3krf:D (2.2) BS01 IPE 2.5.1.1 GO:0004659 ... Q9SBR3 20139160
    54 3kro:A (1.95) BS01 IPE 2.5.1.1 GO:0004659 ... Q9SBR3 20139160
    55 3kro:D (1.95) BS01 IPE 2.5.1.1 GO:0004659 ... Q9SBR3 20139160
    56 3ldw:A (2.47) BS02 IPE ? GO:0004161 ... A5K4U6 21084289
    57 3ldw:B (2.47) BS02 IPE ? GO:0004161 ... A5K4U6 21084289
    58 3ldw:C (2.47) BS02 IPE ? GO:0004161 ... A5K4U6 21084289
    59 3ldw:D (2.47) BS02 IPE ? GO:0004161 ... A5K4U6 21084289
    60 3ll5:A (1.987) BS02 IPE 2.7.4.26 GO:0005524 ... Q9HLX1 20402538
    61 3ll5:B (1.987) BS02 IPE 2.7.4.26 GO:0005524 ... Q9HLX1 20402538
    62 3oab:D (2.3) BS01 IPE 2.5.1.1 GO:0004659 ... Q9SBR3 20965200
    63 3oac:D (2.6) BS01 IPE 2.5.1.1 GO:0004659 ... Q9SBR3 20965200
    64 3wjo:A (2.45) BS01 IPE N/A GO:0004659 ... N/A 24895191
    65 3wjo:A (2.45) BS02 IPE N/A GO:0004659 ... N/A 24895191
    66 4dwb:A (2.1) BS01 IPE 2.5.1.10 GO:0004161 ... Q95WL3 22715997
    67 4dxj:A (2.35) BS04 IPE 2.5.1.10 GO:0004161 ... Q95WL3 22715997
    68 4dxj:B (2.35) BS04 IPE 2.5.1.10 GO:0004161 ... Q95WL3 22715997
    69 4dxj:C (2.35) BS04 IPE 2.5.1.10 GO:0004161 ... Q95WL3 22715997
    70 4dzw:A (3.05) BS03 IPE 2.5.1.10 GO:0004161 ... Q95WL3 22715997
    71 4e1e:A (2.65) BS04 IPE 2.5.1.10 GO:0004161 ... Q95WL3 22715997
    72 4jkw:A (2.01) BS01 IPE ? N/A O00481 23872678 MOAD: Kd=69.9uM
    PDBbind: -logKd/Ki=4.16, Kd=69.9uM
    BindingDB: EC50=71000nM, IC50=513000nM
    73 4jzb:A (1.9) BS03 IPE 2.5.1.1
    2.5.1.10    		 GO:0004161 ... Q4QBL1 24598749
    74 4jzb:B (1.9) BS01 IPE 2.5.1.1
    2.5.1.10    		 GO:0004161 ... Q4QBL1 24598749
    75 4jzx:A (1.8) BS01 IPE 2.5.1.1
    2.5.1.10    		 GO:0004161 ... Q4QBL1 24598749
    76 4jzx:B (1.8) BS01 IPE 2.5.1.1
    2.5.1.10    		 GO:0004161 ... Q4QBL1 24598749
    77 4kpd:A (1.96) BS03 IPE 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 N/A
    78 4kqs:A (1.97) BS03 IPE 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 N/A
    79 4kqu:A (2.07) BS03 IPE 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 N/A
    80 4lfe:A (1.95) BS01 IPE 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    81 4lfe:B (1.95) BS01 IPE 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    82 4lfe:B (1.95) BS02 IPE 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    83 4lfg:A (1.76) BS01 IPE 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    84 4lfg:A (1.76) BS02 IPE 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    85 4lfg:B (1.76) BS01 IPE 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    86 4lfg:B (1.76) BS02 IPE 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    87 4lls:A (1.5) BS01 IPE 2.5.1.10 GO:0004337 ... Q16CN9 N/A
    88 4lls:B (1.5) BS01 IPE 2.5.1.10 GO:0004337 ... Q16CN9 N/A
    89 4llt:A (1.55) BS01 IPE 2.5.1.10 GO:0004337 ... Q16CN9 N/A
    90 4llt:A (1.55) BS02 IPE 2.5.1.10 GO:0004337 ... Q16CN9 N/A
    91 4llt:B (1.55) BS01 IPE 2.5.1.10 GO:0004337 ... Q16CN9 N/A
    92 4llt:B (1.55) BS02 IPE 2.5.1.10 GO:0004337 ... Q16CN9 N/A
    93 4ng6:A (2.35) BS03 IPE 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 N/A
    94 4nke:A (1.46) BS04 IPE 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 N/A
    95 4ogu:A (2.1) BS03 IPE 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 N/A
    96 5cg6:A (1.7) BS04 IPE 2.5.1.1
    2.5.1.10    		 N/A P14324 26314394
    97 6b06:A (2.6) BS04 IPE 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    98 6b06:B (2.6) BS04 IPE 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    99 6b06:C (2.6) BS04 IPE 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    100 6t7n:AAAA (1.9) BS03 IPE ? GO:0004659 ... Q8WS26 N/A
    101 6t7n:AAAA (1.9) BS04 IPE ? GO:0004659 ... Q8WS26 N/A
    102 6w2l:A (2.306) BS01 IPE 2.5.1.87 GO:0002094 ... Q86SQ9 32817466
    103 6w2l:A (2.306) BS02 IPE 2.5.1.87 GO:0002094 ... Q86SQ9 32817466
    104 6w2l:B (2.306) BS01 IPE 2.5.1.87 GO:0016765 ... Q96E22 32817466
    105 7car:A (1.98) BS01 IPE ? GO:0002094 ... A0A0F8R9A0 33872599
    106 7lnu:A (2.5) BS04 IPE 2.7.4.26 GO:0005524 ... M9SEQ1 34905349
    107 7my0:A (1.37) BS01 IPE ? GO:0004659 ... P72683 35704353
    108 7my0:B (1.37) BS01 IPE ? GO:0004659 ... P72683 35704353
    109 7my1:AAA (1.84) BS01 IPE ? GO:0004659 ... P72683 35704353
    110 7my6:A (2.02) BS01 IPE 2.5.1.10 GO:0004337 ... Q31Q61 35704353
    111 7pax:A (2.0) BS01 IPE 2.5.1.87 GO:0002094 ... Q86SQ9 35584224
    112 7s0m:A (2.0) BS01 IPE 2.5.1.29
    5.5.1.12    		 GO:0004659 ... A0A348FUE1 34609847
    113 7s0m:B (2.0) BS01 IPE 2.5.1.29
    5.5.1.12    		 GO:0004659 ... A0A348FUE1 34609847
    114 8a6v:A (1.9) BS03 IPE 2.5.1.1 GO:0004659 ... M1JS91 37308711
    115 8a6v:A (1.9) BS04 IPE 2.5.1.1 GO:0004659 ... M1JS91 37308711
    116 8a6v:B (1.9) BS03 IPE 2.5.1.1 GO:0004659 ... M1JS91 37308711
    117 8a6z:A (2.4) BS03 IPE 2.5.1.1 GO:0004659 ... M1JS91 37308711
    118 8a6z:A (2.4) BS04 IPE 2.5.1.1 GO:0004659 ... M1JS91 37308711
    119 8a6z:B (2.4) BS03 IPE 2.5.1.1 GO:0004659 ... M1JS91 37308711
    120 8a6z:B (2.4) BS04 IPE 2.5.1.1 GO:0004659 ... M1JS91 37308711
    121 8a6z:C (2.4) BS03 IPE 2.5.1.1 GO:0004659 ... M1JS91 37308711
    122 8a6z:C (2.4) BS04 IPE 2.5.1.1 GO:0004659 ... M1JS91 37308711
    123 8a6z:D (2.4) BS03 IPE 2.5.1.1 GO:0004659 ... M1JS91 37308711
    124 8a6z:D (2.4) BS04 IPE 2.5.1.1 GO:0004659 ... M1JS91 37308711
    125 8a6z:E (2.4) BS03 IPE 2.5.1.1 GO:0004659 ... M1JS91 37308711
    126 8a6z:E (2.4) BS04 IPE 2.5.1.1 GO:0004659 ... M1JS91 37308711
    127 8a6z:F (2.4) BS03 IPE 2.5.1.1 GO:0004659 ... M1JS91 37308711
    128 8a6z:F (2.4) BS04 IPE 2.5.1.1 GO:0004659 ... M1JS91 37308711
    129 8a7c:A (1.2) BS03 IPE 2.5.1.1 GO:0004659 ... M1JS91 37308711
    130 8a7c:B (1.2) BS03 IPE 2.5.1.1 GO:0004659 ... M1JS91 37308711
    131 8a7j:A (1.2) BS03 IPE 2.5.1.1 GO:0004659 ... M1JS91 37308711
    132 8a7j:B (1.2) BS03 IPE 2.5.1.1 GO:0004659 ... M1JS91 37308711
    133 8a7k:A (1.3) BS05 IPE 2.5.1.1 GO:0004659 ... M1JS91 37308711
    134 8a7k:B (1.3) BS05 IPE 2.5.1.1 GO:0004659 ... M1JS91 37308711
    135 8f8k:A (2.2) BS01 IPE 2.5.1.1
    2.5.1.10    		 GO:0004161 ... O53507 N/A
    136 8jya:B (1.5) BS01 IPE ? N/A A0A345DF50 37674084
    137 8kgb:A (2.32) BS02 IPE N/A N/A C1K5M2
    Q56Y11    		 N/A
    138 8kgb:A (2.32) BS03 IPE N/A N/A C1K5M2
    Q56Y11    		 N/A
    139 8kgb:B (2.32) BS01 IPE N/A N/A C1K5M2
    Q56Y11    		 N/A
    140 8kgb:B (2.32) BS02 IPE N/A N/A C1K5M2
    Q56Y11    		 N/A
    141 8kgb:B (2.32) BS03 IPE N/A N/A C1K5M2
    Q56Y11    		 N/A
    142 8kgb:C (2.32) BS01 IPE N/A N/A C1K5M2
    Q56Y11    		 N/A
    143 8kgb:C (2.32) BS03 IPE N/A N/A C1K5M2
    Q56Y11    		 N/A
    144 8kgb:D (2.32) BS01 IPE N/A N/A C1K5M2
    Q56Y11    		 N/A
    145 8kgb:D (2.32) BS02 IPE N/A N/A C1K5M2
    Q56Y11    		 N/A
    146 8x35:A (1.92) BS01 IPE 2.5.1.28 GO:0000287 ... C1K5M2 38225831
    147 8x35:B (1.92) BS01 IPE 2.5.1.28 GO:0000287 ... C1K5M2 38225831
    148 8x36:A (2.28) BS02 IPE 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    149 8x36:B (2.28) BS01 IPE 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    150 8x36:B (2.28) BS02 IPE 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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