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BioLiP
Download all results in tab-seperated text for 81 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1arx:A (1.9) BS03 IOD 1.11.1.7 GO:0000302 ... P28313 7665612
    2 1arx:A (1.9) BS04 IOD 1.11.1.7 GO:0000302 ... P28313 7665612
    3 1ary:A (1.9) BS03 IOD 1.11.1.7 GO:0000302 ... P28313 7665612
    4 1cqw:A (1.5) BS01 IOD 3.8.1.5 GO:0003824 ... P59336 10587433
    5 1cqw:A (1.5) BS02 IOD 3.8.1.5 GO:0003824 ... P59336 10587433
    6 1gwd:A (1.77) BS01 IOD 3.2.1.17 GO:0003796 ... P00698 12037300
    7 1gwd:A (1.77) BS02 IOD 3.2.1.17 GO:0003796 ... P00698 12037300
    8 1gwg:A (2.01) BS01 IOD ? GO:0005506 ... P02791 12037300
    9 1gwg:A (2.01) BS02 IOD ? GO:0005506 ... P02791 12037300
    10 1gwg:A (2.01) BS03 IOD ? GO:0005506 ... P02791 12037300
    11 1gza:A (2.06) BS03 IOD 1.11.1.7 GO:0000302 ... P28313 9038188
    12 1huh:A (2.2) BS02 IOD 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 15299369
    13 1huh:A (2.2) BS03 IOD 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 15299369
    14 1wc7:B (2.33) BS02 IOD N/A N/A N/A 15805602
    15 1wc7:H (2.33) BS01 IOD N/A N/A N/A 15805602
    16 1wc7:H (2.33) BS02 IOD N/A N/A N/A 15805602
    17 1zcr:B (1.8) BS01 IOD ? GO:0005179 ... P02766 15981995
    18 2anv:B (1.04) BS02 IOD 3.2.1.17 GO:0003796 ... P09963 16421448
    19 2anx:A (1.04) BS02 IOD 3.2.1.17 GO:0003796 ... P09963 16421448
    20 2anx:B (1.04) BS02 IOD 3.2.1.17 GO:0003796 ... P09963 16421448
    21 2anx:B (1.04) BS03 IOD 3.2.1.17 GO:0003796 ... P09963 16421448
    22 2arl:A (2.0) BS01 IOD ? GO:0003674 ... P83690 16613486
    23 2ciw:A (1.15) BS08 IOD 1.11.1.10 GO:0004601 ... P04963 16790441
    24 2ciw:A (1.15) BS09 IOD 1.11.1.10 GO:0004601 ... P04963 16790441
    25 2dfb:A (1.11) BS01 IOD 3.2.1.8 GO:0004553 ... P36217 16790934
    26 2dfb:A (1.11) BS02 IOD 3.2.1.8 GO:0004553 ... P36217 16790934
    27 2dfb:A (1.11) BS03 IOD 3.2.1.8 GO:0004553 ... P36217 16790934
    28 2eda:A (2.19) BS01 IOD 3.8.1.5 GO:0003824 ... P22643 8369276
    29 2edc:A (2.3) BS01 IOD 3.8.1.5 GO:0003824 ... P22643 8369276
    30 2hib:X (2.0) BS03 IOD 1.8.3.7 N/A Q8NBK3 17452787
    31 2hib:X (2.0) BS04 IOD 1.8.3.7 N/A Q8NBK3 17452787
    32 2hib:X (2.0) BS05 IOD 1.8.3.7 N/A Q8NBK3 17452787
    33 2iwk:A (1.7) BS03 IOD 1.7.2.4 GO:0004129 ... P94127 16904686
    34 2iwk:B (1.7) BS03 IOD 1.7.2.4 GO:0004129 ... P94127 16904686
    35 2iwk:B (1.7) BS13 IOD 1.7.2.4 GO:0004129 ... P94127 16904686
    36 2iwk:B (1.7) BS14 IOD 1.7.2.4 GO:0004129 ... P94127 16904686
    37 2iwk:B (1.7) BS15 IOD 1.7.2.4 GO:0004129 ... P94127 16904686
    38 2q2l:A (2.367) BS02 IOD 1.15.1.1 GO:0004784 ... B2CP37 17642520
    39 2qch:A (1.95) BS01 IOD 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 18184586
    40 2qch:B (1.95) BS03 IOD 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 18184586
    41 2r5l:A (2.4) BS02 IOD 1.11.1.7 GO:0004601 ... A0A452E9Y6 18191143
    42 2r5l:A (2.4) BS03 IOD 1.11.1.7 GO:0004601 ... A0A452E9Y6 18191143
    43 2r5l:A (2.4) BS04 IOD 1.11.1.7 GO:0004601 ... A0A452E9Y6 18191143
    44 2r5l:A (2.4) BS05 IOD 1.11.1.7 GO:0004601 ... A0A452E9Y6 18191143
    45 2r5l:A (2.4) BS06 IOD 1.11.1.7 GO:0004601 ... A0A452E9Y6 18191143
    46 2r5l:A (2.4) BS07 IOD 1.11.1.7 GO:0004601 ... A0A452E9Y6 18191143
    47 2y44:A (1.65) BS01 IOD ? N/A Q07419 21471223
    48 3a0h:D (4.0) BS09 IOD 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    49 3a0h:T (4.0) BS01 IOD ? GO:0009523 ... P12313 19433803
    50 3a0h:a (4.0) BS07 IOD 1.10.3.9 GO:0005506 ... P51765 19433803
    51 3a0h:d (4.0) BS09 IOD 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    52 3da8:A (1.3) BS02 IOD 2.1.2.2 GO:0000287 ... P9WHM5 19394344
    53 3da8:B (1.3) BS01 IOD 2.1.2.2 GO:0000287 ... P9WHM5 19394344
    54 3gyv:A (3.0) BS01 IOD ? GO:0005634 ... Q8I608 19465776
    55 3k9g:A (2.25) BS01 IOD ? N/A O68233 21359836
    56 3k9g:A (2.25) BS02 IOD ? N/A O68233 21359836
    57 3k9g:A (2.25) BS03 IOD ? N/A O68233 21359836
    58 3luz:A (2.05) BS02 IOD 3.1.3.25 GO:0006020 ... A0A0H3M6W8 21359836
    59 3luz:A (2.05) BS03 IOD 3.1.3.25 GO:0006020 ... A0A0H3M6W8 21359836
    60 3luz:B (2.05) BS02 IOD 3.1.3.25 GO:0006020 ... A0A0H3M6W8 21359836
    61 3luz:B (2.05) BS03 IOD 3.1.3.25 GO:0006020 ... A0A0H3M6W8 21359836
    62 3luz:B (2.05) BS04 IOD 3.1.3.25 GO:0006020 ... A0A0H3M6W8 21359836
    63 3o2e:A (1.95) BS01 IOD ? GO:0005634 ... A7ATL3 21359836
    64 4iuh:A (2.1971) BS01 IOD ? N/A B9DL91 24389349
    65 4iuh:B (2.1971) BS01 IOD ? N/A B9DL91 24389349
    66 4ygn:A (1.23) BS02 IOD 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25738615
    67 5jgp:A (2.7) BS01 IOD 2.7.13.3 GO:0007165 ... P27896 28508075
    68 5jgp:A (2.7) BS02 IOD 2.7.13.3 GO:0007165 ... P27896 28508075
    69 5jgp:A (2.7) BS03 IOD 2.7.13.3 GO:0007165 ... P27896 28508075
    70 5jgp:A (2.7) BS04 IOD 2.7.13.3 GO:0007165 ... P27896 28508075
    71 5jgp:A (2.7) BS05 IOD 2.7.13.3 GO:0007165 ... P27896 28508075
    72 5jtb:A (2.8) BS05 IOD ? GO:0001609 ... P0ABE7
    P29274    		 28508075
    73 5moz:A (1.34) BS05 IOD 3.5.2.6 GO:0008658 ... P14489 28678295
    74 5moz:A (1.34) BS06 IOD 3.5.2.6 GO:0008658 ... P14489 28678295
    75 5moz:B (1.34) BS02 IOD 3.5.2.6 GO:0008658 ... P14489 28678295
    76 5moz:B (1.34) BS03 IOD 3.5.2.6 GO:0008658 ... P14489 28678295
    77 5moz:B (1.34) BS04 IOD 3.5.2.6 GO:0008658 ... P14489 28678295
    78 7ve3:A (2.7) BS03 IOD N/A GO:0004601 ... N/A 34761444
    79 7ve3:A (2.7) BS04 IOD N/A GO:0004601 ... N/A 34761444
    80 8sh3:C (2.8) BS02 IOD ? GO:0005886 ... I3L8V6 38184688
    81 8sh3:D (2.8) BS03 IOD ? GO:0005886 ... I3L8V6 38184688
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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