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BioLiP
Download all results in tab-seperated text for 47 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 185l:A (1.8) BS01 IND 3.2.1.17 GO:0003796 ... P00720 7612599 MOAD: Kd=289uM
    PDBbind: -logKd/Ki=3.54, Kd=290uM
    2 1eg9:A (1.6) BS03 IND 1.14.12.12 GO:0005506 ... P0A110 10669618
    3 1l4h:A (2.1) BS01 IND 2.4.2.21 GO:0000166 ... Q05603 12101181
    4 1o7n:A (1.4) BS01 IND 1.14.12.12 GO:0005506 ... P0A110 12586937
    5 1uuv:A (1.65) BS02 IND 1.14.12.12 GO:0005506 ... P0A110 15942729
    6 2b24:A (3.0) BS03 IND 1.14.12.12 GO:0005506 ... Q9X3R9 16237006
    7 2b24:C (3.0) BS03 IND 1.14.12.12 GO:0005506 ... Q9X3R9 16237006
    8 2b24:E (3.0) BS03 IND 1.14.12.12 GO:0005506 ... Q9X3R9 16237006
    9 2p85:A (2.35) BS02 IND 1.14.14.1 GO:0004497 ... Q16696 17428784
    10 2p85:A (2.35) BS03 IND 1.14.14.1 GO:0004497 ... Q16696 17428784
    11 2p85:B (2.35) BS02 IND 1.14.14.1 GO:0004497 ... Q16696 17428784
    12 2p85:B (2.35) BS03 IND 1.14.14.1 GO:0004497 ... Q16696 17428784
    13 2p85:C (2.35) BS02 IND 1.14.14.1 GO:0004497 ... Q16696 17428784
    14 2p85:C (2.35) BS03 IND 1.14.14.1 GO:0004497 ... Q16696 17428784
    15 2p85:D (2.35) BS02 IND 1.14.14.1 GO:0004497 ... Q16696 17428784
    16 2p85:E (2.35) BS02 IND 1.14.14.1 GO:0004497 ... Q16696 17428784
    17 2p85:E (2.35) BS03 IND 1.14.14.1 GO:0004497 ... Q16696 17428784
    18 2p85:F (2.35) BS02 IND 1.14.14.1 GO:0004497 ... Q16696 17428784
    19 2xvj:A (2.48) BS02 IND 1.14.13.148 GO:0000166 ... Q83XK4 21527346
    20 2xvj:B (2.48) BS02 IND 1.14.13.148 GO:0000166 ... Q83XK4 21527346
    21 2xvj:C (2.48) BS02 IND 1.14.13.148 GO:0000166 ... Q83XK4 21527346
    22 3q8i:A (2.0) BS01 IND ? GO:0005549 ... Q8T6R7 N/A
    23 3snm:A (2.15) BS03 IND ? GO:0005515 ... P81460 23727478
    24 4ean:A (1.75) BS01 IND 3.2.1.23 GO:0004553 ... P22498 22655749
    25 4ean:B (1.75) BS01 IND 3.2.1.23 GO:0004553 ... P22498 22655749
    26 5lvw:A (2.9) BS02 IND ? GO:0000166 ... I7IIA9 28643772
    27 5xdc:A (1.5785) BS01 IND 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    28 5xdc:B (1.5785) BS01 IND 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    29 5xdc:C (1.5785) BS01 IND 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    30 5xdc:D (1.5785) BS01 IND 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    31 5xdd:C (1.9) BS02 IND 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    32 5xdd:D (1.9) BS03 IND 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    33 7wgi:A (2.5) BS01 IND 2.5.1.21 GO:0004310 ... A0A364LX79 35811857
    34 7z94:A (1.74) BS02 IND ? GO:0000166 ... E6V140 36762980
    35 7z94:A (1.74) BS03 IND ? GO:0000166 ... E6V140 36762980
    36 7z94:A (1.74) BS04 IND ? GO:0000166 ... E6V140 36762980
    37 7z94:A (1.74) BS05 IND ? GO:0000166 ... E6V140 36762980
    38 7z94:A (1.74) BS06 IND ? GO:0000166 ... E6V140 36762980
    39 7z94:A (1.74) BS07 IND ? GO:0000166 ... E6V140 36762980
    40 7z94:A (1.74) BS08 IND ? GO:0000166 ... E6V140 36762980
    41 7zhi:A (2.946) BS01 IND 2.1.3.2 GO:0004070 ... A0A5K1K910 36195578
    42 7zhi:A (2.946) BS02 IND 2.1.3.2 GO:0004070 ... A0A5K1K910 36195578
    43 7zhi:B (2.946) BS01 IND 2.1.3.2 GO:0004070 ... A0A5K1K910 36195578
    44 7zhi:C (2.946) BS01 IND 2.1.3.2 GO:0004070 ... A0A5K1K910 36195578
    45 8b05:B (2.1) BS02 IND 4.2.1.20 GO:0000162 ... P0A2K1 37185266
    46 8gad:A (1.88) BS01 IND N/A N/A N/A 38746206
    47 8gad:B (1.88) BS01 IND N/A N/A N/A 38746206
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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