Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 114 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1aes:A (2.1) BS02 IMD 1.11.1.5 GO:0004601 ... P00431 8673607
    2 1aky:A (1.63) BS02 IMD 2.7.4.3 GO:0003688 ... P07170 7670369
    3 1ccg:A (2.1) BS02 IMD 1.11.1.5 GO:0004601 ... P00431 7809133
    4 1cxa:A (2.2) BS01 IMD ? GO:0009055 ... P0C0X8 15299423
    5 1dp9:A (2.6) BS01 IMD 2.7.13.3 GO:0006355 ... P23222 10747783
    6 1ds4:A (2.02) BS02 IMD 1.11.1.5 GO:0004601 ... P00431 11170452
    7 1dse:A (2.0) BS03 IMD 1.11.1.5 GO:0004601 ... P00431 11170452
    8 1dsg:A (2.56) BS02 IMD 1.11.1.5 GO:0004601 ... P00431 11170452
    9 1dso:A (2.03) BS02 IMD 1.11.1.5 GO:0004601 ... P00431 11170452
    10 1f4u:A (2.69) BS02 IMD 1.11.1.7
    1.14.-.-    		 GO:0004497 ... Q55080 10859321
    11 1f4u:B (2.69) BS02 IMD 1.11.1.7
    1.14.-.-    		 GO:0004497 ... Q55080 10859321
    12 1fi7:A (-1.00) BS01 IMD ? GO:0005515 ... P00004 11472026
    13 1ikj:A (1.27) BS02 IMD 1.7.6.1 GO:0005576 ... Q94734 11560480
    14 1irc:A (2.17) BS02 IMD 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8204590
    15 1mbi:A (2.0) BS02 IMD 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 1994031
    16 1noc:A (2.6) BS02 IMD 1.14.13.39 GO:0004517 ... P29477 9334294
    17 1nos:A (2.1) BS02 IMD 1.14.13.39 GO:0004517 ... P29477 9334294
    18 1w7c:A (1.23) BS04 IMD 1.4.3.- GO:0005507 ... Q96X16 16929109
    19 1wkq:A (1.17) BS02 IMD 3.5.4.3 GO:0003824 ... O34598 15180998
    20 1wkq:A (1.17) BS03 IMD 3.5.4.3 GO:0003824 ... O34598 15180998
    21 1wkq:B (1.17) BS01 IMD 3.5.4.3 GO:0003824 ... O34598 15180998
    22 1wkq:B (1.17) BS03 IMD 3.5.4.3 GO:0003824 ... O34598 15180998
    23 2d6c:A (2.26) BS02 IMD 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 17173408
    24 2d6c:B (2.26) BS02 IMD 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 17173408
    25 2fmy:A (2.2) BS03 IMD ? GO:0003677 ... Q3AB29 17292914
    26 2fmy:B (2.2) BS02 IMD ? GO:0003677 ... Q3AB29 17292914
    27 2fmy:C (2.2) BS03 IMD ? GO:0003677 ... Q3AB29 17292914
    28 2fmy:D (2.2) BS02 IMD ? GO:0003677 ... Q3AB29 17292914
    29 2go3:A (2.0) BS03 IMD 3.5.1.108 GO:0006796 ... O67648 16800620
    30 2go3:B (2.0) BS04 IMD 3.5.1.108 GO:0006796 ... O67648 16800620
    31 2go3:B (2.0) BS05 IMD 3.5.1.108 GO:0006796 ... O67648 16800620
    32 2h7q:A (1.5) BS02 IMD 1.14.15.1 GO:0004497 ... P00183 16943206
    33 2y73:A (2.6) BS04 IMD 1.4.3.21 GO:0005507 ... Q16853 21585208
    34 2y73:A (2.6) BS05 IMD 1.4.3.21 GO:0005507 ... Q16853 21585208
    35 2y73:A (2.6) BS06 IMD 1.4.3.21 GO:0005507 ... Q16853 21585208
    36 2y73:B (2.6) BS04 IMD 1.4.3.21 GO:0005507 ... Q16853 21585208
    37 2y73:B (2.6) BS05 IMD 1.4.3.21 GO:0005507 ... Q16853 21585208
    38 2y73:B (2.6) BS06 IMD 1.4.3.21 GO:0005507 ... Q16853 21585208
    39 2y73:B (2.6) BS07 IMD 1.4.3.21 GO:0005507 ... Q16853 21585208
    40 2y74:A (2.95) BS04 IMD 1.4.3.21 GO:0005507 ... Q16853 21585208
    41 2y74:A (2.95) BS05 IMD 1.4.3.21 GO:0005507 ... Q16853 21585208
    42 2y74:B (2.95) BS04 IMD 1.4.3.21 GO:0005507 ... Q16853 21585208
    43 2y74:B (2.95) BS05 IMD 1.4.3.21 GO:0005507 ... Q16853 21585208
    44 3e2t:A (1.9) BS02 IMD 1.14.16.4 GO:0004497 ... P70080 18937498
    45 3ebz:A (1.2) BS01 IMD 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.47    		 GO:0004190 ... P04584 18834890
    46 3ebz:B (1.2) BS02 IMD 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.47    		 GO:0004190 ... P04584 18834890
    47 3ec0:B (1.18) BS02 IMD 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.47    		 GO:0004190 ... P04584 18834890
    48 3ec0:B (1.18) BS03 IMD 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.47    		 GO:0004190 ... P04584 18834890
    49 3ecg:B (1.18) BS02 IMD 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.47    		 GO:0004190 ... P04584 18834890
    50 3mom:A (2.25) BS01 IMD ? GO:0046872 ... G3XD33 20572666
    51 3mom:B (2.25) BS01 IMD ? GO:0046872 ... G3XD33 20572666
    52 3mom:B (2.25) BS02 IMD ? GO:0046872 ... G3XD33 20572666
    53 3vhb:A (2.1) BS02 IMD ? GO:0005344 ... P04252 10448042
    54 3vhb:B (2.1) BS02 IMD ? GO:0005344 ... P04252 10448042
    55 3wfx:A (1.94) BS02 IMD ? GO:0019825 ... B3DUZ1 26094577
    56 3wfx:B (1.94) BS02 IMD ? GO:0019825 ... B3DUZ1 26094577
    57 4hf3:A (1.1476) BS02 IMD 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25075329
    58 4hf3:A (1.1476) BS03 IMD 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25075329
    59 4hf3:A (1.1476) BS04 IMD 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25075329
    60 4hf3:A (1.1476) BS05 IMD 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25075329
    61 4hf3:A (1.1476) BS06 IMD 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25075329
    62 4hf3:A (1.1476) BS07 IMD 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25075329
    63 4mba:A (2.0) BS02 IMD ? GO:0005344 ... P02210 2926816
    64 4mu1:A (1.5) BS02 IMD 4.2.1.19 GO:0000105 ... O23346 26095028
    65 4qp1:A (2.7) BS02 IMD 2.7.11.24 GO:0000165 ... P28482 26338362
    66 4qp1:B (2.7) BS02 IMD 2.7.11.24 GO:0000165 ... P28482 26338362
    67 4qp2:A (2.23) BS02 IMD 2.7.11.24 GO:0000165 ... P28482 26338362
    68 4qp6:A (3.1) BS02 IMD 2.7.11.24 GO:0000165 ... P28482 26338362
    69 4uy5:A (1.997) BS01 IMD 2.1.1.44 GO:0008168 ... A0R5M8 25251321
    70 4uzi:A (2.1) BS02 IMD 1.11.1.19
    1.11.1.7    		 GO:0004601 ... I2DBY1 25542606 MOAD: Ki=5.78mM
    71 4uzi:A (2.1) BS03 IMD 1.11.1.19
    1.11.1.7    		 GO:0004601 ... I2DBY1 25542606 MOAD: Ki=5.78mM
    72 4uzi:B (2.1) BS02 IMD 1.11.1.19
    1.11.1.7    		 GO:0004601 ... I2DBY1 25542606 MOAD: Ki=5.78mM
    73 4uzi:B (2.1) BS03 IMD 1.11.1.19
    1.11.1.7    		 GO:0004601 ... I2DBY1 25542606 MOAD: Ki=5.78mM
    74 4xh7:A (1.65) BS01 IMD ? N/A Q8VBX6 25662616
    75 4xmg:A (1.8) BS02 IMD 1.7.6.1 GO:0005576 ... Q6PQK2 26167269
    76 5d2c:A (2.06) BS03 IMD ? GO:0000155 ... P0AE68 26569142
    77 5d2c:B (2.06) BS03 IMD ? GO:0000155 ... P0AE68 26569142
    78 5dgc:A (1.94) BS03 IMD ? GO:0000155 ... P0AE68 26569142
    79 5dgc:B (1.94) BS03 IMD ? GO:0000155 ... P0AE68 26569142
    80 5lie:A (1.799) BS02 IMD 1.14.-.- GO:0004497 ... P9WPN8 27932461
    81 5oln:A (1.88) BS01 IMD 2.4.2.2 GO:0004645 ... P39142 29633966
    82 5oln:B (1.88) BS01 IMD 2.4.2.2 GO:0004645 ... P39142 29633966
    83 5vlb:A (2.25) BS02 IMD 1.1.1.23 GO:0000105 ... G7IKX3 28874718
    84 5vlb:B (2.25) BS02 IMD 1.1.1.23 GO:0000105 ... G7IKX3 28874718
    85 5vlb:C (2.25) BS02 IMD 1.1.1.23 GO:0000105 ... G7IKX3 28874718
    86 5vlb:D (2.25) BS02 IMD 1.1.1.23 GO:0000105 ... G7IKX3 28874718
    87 5vlb:E (2.25) BS02 IMD 1.1.1.23 GO:0000105 ... G7IKX3 28874718
    88 5vlb:F (2.25) BS02 IMD 1.1.1.23 GO:0000105 ... G7IKX3 28874718
    89 6d2m:A (1.9) BS02 IMD 4.2.1.1 GO:0004089 ... Q9HVB9 30088334
    90 6d2m:A (1.9) BS03 IMD 4.2.1.1 GO:0004089 ... Q9HVB9 30088334
    91 6otd:A (1.8) BS02 IMD 2.7.13.3 GO:0019825 ... A7HD43 31914416
    92 6rgi:A (2.64) BS03 IMD ? GO:0005515 ... P00044 31254353
    93 6syc:A (1.38) BS02 IMD 3.2.1.17 GO:0003796 ... P00698 32876060
    94 6yb8:A (2.36) BS03 IMD 4.1.1.21
    6.3.2.6    		 GO:0004638 ... P22234 32571877
    95 7abn:A (1.65) BS03 IMD 4.1.1.93 GO:0005737 ... Q9I6N5 33763291
    96 7abn:D (1.65) BS03 IMD 4.1.1.93 GO:0005737 ... Q9I6N5 33763291
    97 7abn:H (1.65) BS03 IMD 4.1.1.93 GO:0005737 ... Q9I6N5 33763291
    98 7abn:M (1.65) BS01 IMD 4.1.1.93 GO:0005737 ... Q9I6N5 33763291
    99 7bcu:A (0.98) BS01 IMD 3.2.1.17 GO:0003796 ... P00698 34197115
    100 7bcx:A (1.06) BS01 IMD 3.2.1.17 GO:0003796 ... P00698 34197115
    101 7bd0:A (1.06) BS01 IMD 3.2.1.17 GO:0003796 ... P00698 34197115
    102 7les:A (2.65) BS02 IMD ? GO:0004497 ... L8GJB3 35730528
    103 7les:B (2.65) BS02 IMD ? GO:0004497 ... L8GJB3 35730528
    104 7les:C (2.65) BS02 IMD ? GO:0004497 ... L8GJB3 35730528
    105 7les:D (2.65) BS02 IMD ? GO:0004497 ... L8GJB3 35730528
    106 8h17:A (2.15) BS01 IMD ? GO:0019825 ... Q8DHH0 37076076
    107 8qaw:A (1.55) BS01 IMD 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    108 8qaw:B (1.55) BS01 IMD 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    109 8qaw:C (1.55) BS01 IMD 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    110 8qaw:D (1.55) BS01 IMD 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    111 8qaw:E (1.55) BS01 IMD 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    112 8qaw:F (1.55) BS01 IMD 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    113 8qaw:G (1.55) BS01 IMD 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    114 8qaw:H (1.55) BS01 IMD 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417