Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 53 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1bt5:A (1.8) BS01 IM2 3.5.2.6 GO:0005515 ... P62593 N/A
    2 1h5x:A (1.9) BS01 IM2 3.5.2.6 GO:0008658 ... Q51400 N/A
    3 1h5x:B (1.9) BS01 IM2 3.5.2.6 GO:0008658 ... Q51400 N/A
    4 1jvj:A (1.73) BS01 IM2 3.5.2.6 GO:0005515 ... P62593 11870868
    5 1ll5:A (1.8) BS01 IM2 3.5.2.6 GO:0008800 ... P00811 12435704
    6 1ll5:B (1.8) BS01 IM2 3.5.2.6 GO:0008800 ... P00811 12435704
    7 3bfc:A (2.2) BS01 IM2 3.5.2.6 GO:0008800 ... Q93PQ0 N/A
    8 3bfc:B (2.2) BS01 IM2 3.5.2.6 GO:0008800 ... Q93PQ0 N/A
    9 3bfc:C (2.2) BS01 IM2 3.5.2.6 GO:0008800 ... Q93PQ0 N/A
    10 3bfc:D (2.2) BS01 IM2 3.5.2.6 GO:0008800 ... Q93PQ0 N/A
    11 3mzf:A (1.5) BS01 IM2 3.4.16.4
    3.5.2.6    		 GO:0000270 ... P0AEB2 20726582
    12 3pbq:A (1.7) BS01 IM2 3.4.16.4 GO:0000917 ... G3XD46 21135211
    13 3q81:A (2.0) BS01 IM2 ? GO:0008658 ... P18357 21775440
    14 3q81:B (2.0) BS01 IM2 ? GO:0008658 ... P18357 21775440
    15 3udx:A (2.5) BS01 IM2 2.4.1.129
    3.4.16.4    		 GO:0008658 ... G1C794 22050378
    16 3udx:B (2.5) BS01 IM2 2.4.1.129
    3.4.16.4    		 GO:0008658 ... G1C794 22050378
    17 3upn:A (2.2) BS01 IM2 3.4.16.4 GO:0005829 ... P9WKD1 22365933
    18 3upn:B (2.2) BS01 IM2 3.4.16.4 GO:0005829 ... P9WKD1 22365933
    19 4a52:A (-1.00) BS01 IM2 2.-.-.- GO:0008360 ... O34816 22579252
    20 4ben:A (2.15) BS01 IM2 3.4.16.4 GO:0000270 ... P39045 N/A
    21 4ben:B (2.15) BS01 IM2 3.4.16.4 GO:0000270 ... P39045 N/A
    22 4ben:C (2.15) BS01 IM2 3.4.16.4 GO:0000270 ... P39045 N/A
    23 4ben:D (2.15) BS01 IM2 3.4.16.4 GO:0000270 ... P39045 N/A
    24 4gog:A (1.1) BS01 IM2 3.5.2.6 GO:0008800 ... Q9KJY7 23148776
    25 4gog:B (1.1) BS01 IM2 3.5.2.6 GO:0008800 ... Q9KJY7 23148776
    26 4h8r:A (1.25) BS01 IM2 3.5.2.6 GO:0008800 ... Q09HD0 23148776
    27 4h8r:B (1.25) BS01 IM2 3.5.2.6 GO:0008800 ... Q09HD0 23148776
    28 4jmx:A (2.55) BS01 IM2 2.3.2.- GO:0005576 ... O53638 23999293 PDBbind: -logKd/Ki=7.21, Kd=62.1nM
    29 5f83:A (1.38) BS01 IM2 3.5.2.6 GO:0008800 ... Q0Z8S4 27590339
    30 5f83:B (1.38) BS01 IM2 3.5.2.6 GO:0008800 ... Q0Z8S4 27590339
    31 5qb4:A (1.95) BS01 IM2 3.5.2.6 GO:0008658 ... Q6XEC0 29348071
    32 5qb4:B (1.95) BS01 IM2 3.5.2.6 GO:0008658 ... Q6XEC0 29348071
    33 5qb4:C (1.95) BS01 IM2 3.5.2.6 GO:0008658 ... Q6XEC0 29348071
    34 5qb4:D (1.95) BS01 IM2 3.5.2.6 GO:0008658 ... Q6XEC0 29348071
    35 6iyw:A (1.6) BS01 IM2 2.3.2.- GO:0016740 ... I6Y9J2 30686533 PDBbind: -logKd/Ki=7.23, Kd=58.8nM
    36 6iyw:B (1.6) BS01 IM2 2.3.2.- GO:0016740 ... I6Y9J2 30686533
    37 6iyw:C (1.6) BS01 IM2 2.3.2.- GO:0016740 ... I6Y9J2 30686533
    38 6iyw:D (1.6) BS01 IM2 2.3.2.- GO:0016740 ... I6Y9J2 30686533
    39 6iyw:E (1.6) BS01 IM2 2.3.2.- GO:0016740 ... I6Y9J2 30686533
    40 6iyw:F (1.6) BS01 IM2 2.3.2.- GO:0016740 ... I6Y9J2 30686533
    41 6m5q:A (1.3) BS01 IM2 3.5.2.6 GO:0000166 ... Q9XB24 32888908
    42 6mkf:A (2.8) BS01 IM2 ? GO:0005886 ... A0A075Q0W3 30355734
    43 6mkh:A (2.62) BS01 IM2 ? GO:0005886 ... Q9K3C9 30355734
    44 6p97:A (1.8) BS01 IM2 3.5.2.6 GO:0008658 ... Q6XEC0 31358584
    45 6p97:B (1.8) BS01 IM2 3.5.2.6 GO:0008658 ... Q6XEC0 31358584
    46 6skp:A (1.891) BS01 IM2 3.5.2.6 GO:0008658 ... Q7BNC2 32683794
    47 6skp:B (1.891) BS01 IM2 3.5.2.6 GO:0008658 ... Q7BNC2 32683794
    48 7kh9:A (2.29) BS01 IM2 3.5.2.6 GO:0008658 ... Q6XEC0 33492952
    49 7kh9:B (2.29) BS01 IM2 3.5.2.6 GO:0008658 ... Q6XEC0 33492952
    50 7khz:A (2.04) BS01 IM2 3.5.2.6 GO:0008658 ... F6KZJ2 33492952
    51 7llh:A (2.1) BS01 IM2 3.5.2.6 GO:0008800 ... Q9F663 34022225
    52 7llh:B (2.1) BS01 IM2 3.5.2.6 GO:0008800 ... Q9F663 34022225
    53 7t7g:A (2.5) BS01 IM2 ? GO:0008658 ... Q9L4P2 35420470
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218