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BioLiP
Download all results in tab-seperated text for 79 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a9q:A (2.0) BS01 HPA 2.4.2.1 GO:0003824 ... P55859 9585525 PDBbind: -logKd/Ki=6.17, Kd=0.68uM
    BindingDB: Kd=680nM
    2 1a9r:A (2.0) BS01 HPA 2.4.2.1 GO:0003824 ... P55859 9585525 BindingDB: Kd=680nM
    3 1a9t:A (2.0) BS02 HPA 2.4.2.1 GO:0003824 ... P55859 9585525 BindingDB: Kd=680nM
    4 1bdh:A (2.7) BS02 HPA ? GO:0000976 ... P0ACP7 N/A
    5 1bdi:A (3.0) BS02 HPA ? GO:0000976 ... P0ACP7 N/A
    6 1jfs:A (2.9) BS02 HPA ? GO:0000976 ... P0ACP7 11781089
    7 1jft:A (2.5) BS02 HPA ? GO:0000976 ... P0ACP7 11781089
    8 1jh9:A (2.55) BS02 HPA ? GO:0000976 ... P0ACP7 11781089
    9 1pnr:A (2.7) BS02 HPA ? GO:0000976 ... P0ACP7 7973627
    10 1qp0:A (2.9) BS02 HPA ? GO:0000976 ... P0ACP7 10438625
    11 1qp4:A (3.0) BS02 HPA ? GO:0000976 ... P0ACP7 10438625
    12 1qp7:A (2.9) BS02 HPA ? GO:0000976 ... P0ACP7 10438625
    13 1qpz:A (2.5) BS02 HPA ? GO:0000976 ... P0ACP7 10438625
    14 1qqa:A (3.0) BS02 HPA ? GO:0000976 ... P0ACP7 10438625
    15 1qqb:A (2.7) BS02 HPA ? GO:0000976 ... P0ACP7 10438625
    16 1vfn:A (2.15) BS01 HPA 2.4.2.1 GO:0003824 ... P55859 9020983 MOAD: Ki=2.5uM
    PDBbind: -logKd/Ki=5.60, Ki=2.5uM
    BindingDB: Kd=680nM
    17 1vpw:A (2.7) BS02 HPA ? GO:0000976 ... P0ACP7 9628480
    18 1zay:A (2.7) BS02 HPA ? GO:0000976 ... P0ACP7 N/A
    19 2pud:A (2.6) BS02 HPA ? GO:0000976 ... P0ACP7 7973627
    20 2pug:A (2.7) BS02 HPA ? GO:0000976 ... P0ACP7 9454587
    21 2w3r:B (2.9) BS02 HPA 1.1.1.204 GO:0005506 ... O54051 19109249
    22 2w3r:D (2.9) BS02 HPA 1.1.1.204 GO:0005506 ... O54051 19109249
    23 2w3r:F (2.9) BS02 HPA 1.1.1.204 GO:0005506 ... O54051 19109249
    24 2w3r:H (2.9) BS02 HPA 1.1.1.204 GO:0005506 ... O54051 19109249
    25 2w55:B (3.4) BS02 HPA 1.1.1.204 GO:0005506 ... O54051 19109249
    26 2w55:D (3.4) BS02 HPA 1.1.1.204 GO:0005506 ... O54051 19109249
    27 2w55:F (3.4) BS02 HPA 1.1.1.204 GO:0005506 ... O54051 19109249
    28 2w55:H (3.4) BS02 HPA 1.1.1.204 GO:0005506 ... O54051 19109249
    29 3enz:A (2.03) BS01 HPA 2.4.2.1
    2.4.2.44    		 GO:0003824 ... Q8I3X4 19575810
    30 3enz:B (2.03) BS01 HPA 2.4.2.1
    2.4.2.44    		 GO:0003824 ... Q8I3X4 19575810
    31 3enz:C (2.03) BS01 HPA 2.4.2.1
    2.4.2.44    		 GO:0003824 ... Q8I3X4 19575810
    32 3enz:D (2.03) BS01 HPA 2.4.2.1
    2.4.2.44    		 GO:0003824 ... Q8I3X4 19575810
    33 3enz:E (2.03) BS01 HPA 2.4.2.1
    2.4.2.44    		 GO:0003824 ... Q8I3X4 19575810
    34 3enz:F (2.03) BS01 HPA 2.4.2.1
    2.4.2.44    		 GO:0003824 ... Q8I3X4 19575810
    35 3fnq:A (1.85) BS01 HPA 2.4.2.1 GO:0003824 ... Q9BMI9 20057051
    36 3fnq:B (1.85) BS01 HPA 2.4.2.1 GO:0003824 ... Q9BMI9 20057051
    37 3fnq:C (1.85) BS01 HPA 2.4.2.1 GO:0003824 ... Q9BMI9 20057051
    38 3lba:A (2.24) BS01 HPA 2.4.2.1 GO:0003824 ... Q8DTU4 N/A
    39 3nrz:C (1.8) BS01 HPA 1.17.1.4
    1.17.3.2    		 GO:0005506 ... P80457 20615869 PDBbind: -logKd/Ki=5.34, Kd=4.6uM
    40 3nrz:L (1.8) BS01 HPA 1.17.1.4
    1.17.3.2    		 GO:0005506 ... P80457 20615869
    41 3ozb:A (2.8) BS01 HPA 2.4.2.44 GO:0003824 ... Q9HZK1 21197954
    42 3ozb:B (2.8) BS01 HPA 2.4.2.44 GO:0003824 ... Q9HZK1 21197954
    43 3ozb:C (2.8) BS01 HPA 2.4.2.44 GO:0003824 ... Q9HZK1 21197954
    44 3ozb:D (2.8) BS01 HPA 2.4.2.44 GO:0003824 ... Q9HZK1 21197954
    45 3ozb:E (2.8) BS01 HPA 2.4.2.44 GO:0003824 ... Q9HZK1 21197954
    46 3ozb:F (2.8) BS01 HPA 2.4.2.44 GO:0003824 ... Q9HZK1 21197954
    47 3ozf:A (1.944) BS01 HPA 2.4.2.22
    2.4.2.8    		 GO:0000166 ... P20035 22726686
    48 3ozf:B (1.944) BS01 HPA 2.4.2.22
    2.4.2.8    		 GO:0000166 ... P20035 22726686
    49 3ozf:C (1.944) BS01 HPA 2.4.2.22
    2.4.2.8    		 GO:0000166 ... P20035 22726686
    50 3ozf:D (1.944) BS02 HPA 2.4.2.22
    2.4.2.8    		 GO:0000166 ... P20035 22726686
    51 3pan:A (2.627) BS02 HPA 3.5.4.2 GO:0000034 ... Q9I6Y4 N/A
    52 3pan:B (2.627) BS02 HPA 3.5.4.2 GO:0000034 ... Q9I6Y4 N/A
    53 3scz:A (1.95) BS01 HPA 2.4.2.1 GO:0003824 ... P9WP01 N/A
    54 3scz:B (1.95) BS01 HPA 2.4.2.1 GO:0003824 ... P9WP01 N/A
    55 4dab:A (1.85) BS01 HPA 2.4.2.1 GO:0003824 ... O34925 22957058
    56 4uc0:A (2.4) BS01 HPA 2.4.2.1 GO:0003824 ... B9JYS2 N/A
    57 5ifk:A (1.967) BS01 HPA 2.4.2.1 GO:0003824 ... Q6CSZ6 27768715
    58 5ifk:B (1.967) BS01 HPA 2.4.2.1 GO:0003824 ... Q6CSZ6 27768715
    59 5ifk:C (1.967) BS01 HPA 2.4.2.1 GO:0003824 ... Q6CSZ6 27768715
    60 5mx4:C (2.31) BS01 HPA 2.4.2.3 GO:0003824 ... K2JXG0 28336275
    61 5mx6:A (2.41) BS01 HPA 2.4.2.1 GO:0003824 ... P56463 28336275
    62 5mx6:B (2.41) BS01 HPA 2.4.2.1 GO:0003824 ... P56463 28336275
    63 5mx6:C (2.41) BS01 HPA 2.4.2.1 GO:0003824 ... P56463 28336275
    64 5mx6:D (2.41) BS01 HPA 2.4.2.1 GO:0003824 ... P56463 28336275
    65 5mx6:F (2.41) BS01 HPA 2.4.2.1 GO:0003824 ... P56463 28336275
    66 5mx8:A (2.4) BS01 HPA 2.4.2.1 GO:0003824 ... P56463 28336275
    67 5tbu:A (2.1) BS01 HPA 2.4.2.1 GO:0003824 ... A0A0U3AGT1 30192840
    68 6hgq:A (1.9) BS02 HPA 2.4.2.7 GO:0002055 ... P07741 31160323
    69 6hgq:B (1.9) BS02 HPA 2.4.2.7 GO:0002055 ... P07741 31160323
    70 6hgq:C (1.9) BS02 HPA 2.4.2.7 GO:0002055 ... P07741 31160323
    71 6hgq:D (1.9) BS03 HPA 2.4.2.7 GO:0002055 ... P07741 31160323
    72 6ii7:A (2.48) BS02 HPA 3.5.4.31
    3.5.4.4    		 GO:0004000 ... Q8IJA9 31002765
    73 8q6y:A (1.81) BS03 HPA N/A GO:0004497 ... A0A0F4JF04 N/A
    74 8q6y:B (1.81) BS02 HPA N/A GO:0004497 ... A0A0F4JF04 N/A
    75 8q6y:B (1.81) BS03 HPA N/A GO:0004497 ... A0A0F4JF04 N/A
    76 8swp:A (2.1) BS01 HPA 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    77 8swp:B (2.1) BS01 HPA 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    78 8swp:D (2.1) BS01 HPA 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    79 8swp:E (2.1) BS01 HPA 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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