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BioLiP
Download all results in tab-seperated text for 31 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1dq9:A (2.8) BS01 HMG 1.1.1.34 GO:0004420 ... P04035 10698924
    2 1dq9:A (2.8) BS02 HMG 1.1.1.34 GO:0004420 ... P04035 10698924
    3 1dq9:B (2.8) BS01 HMG 1.1.1.34 GO:0004420 ... P04035 10698924
    4 1dq9:B (2.8) BS02 HMG 1.1.1.34 GO:0004420 ... P04035 10698924
    5 1dq9:C (2.8) BS01 HMG 1.1.1.34 GO:0004420 ... P04035 10698924
    6 1dq9:C (2.8) BS02 HMG 1.1.1.34 GO:0004420 ... P04035 10698924
    7 1dq9:D (2.8) BS01 HMG 1.1.1.34 GO:0004420 ... P04035 10698924
    8 1dq9:D (2.8) BS02 HMG 1.1.1.34 GO:0004420 ... P04035 10698924
    9 1qax:A (2.8) BS01 HMG 1.1.1.88 GO:0004420 ... P13702 10377386
    10 1xpk:A (2.0) BS01 HMG 2.3.3.10 GO:0004421 ... A0A0H3K1U2 15498869
    11 1xpk:C (2.0) BS01 HMG 2.3.3.10 GO:0004421 ... A0A0H3K1U2 15498869
    12 1xpk:D (2.0) BS02 HMG 2.3.3.10 GO:0004421 ... A0A0H3K1U2 15498869
    13 1xpm:A (1.6) BS01 HMG 2.3.3.10 GO:0004421 ... A0A0H3K1U2 15498869
    14 1xpm:B (1.6) BS01 HMG 2.3.3.10 GO:0004421 ... A0A0H3K1U2 15498869
    15 1xpm:C (1.6) BS01 HMG 2.3.3.10 GO:0004421 ... A0A0H3K1U2 15498869
    16 1xpm:D (1.6) BS01 HMG 2.3.3.10 GO:0004421 ... A0A0H3K1U2 15498869
    17 2fa0:A (2.49) BS01 HMG 2.3.3.10 GO:0004421 ... Q9M6U3 16864776
    18 2wya:A (1.7) BS01 HMG 2.3.3.10 GO:0001822 ... P54868 20346956
    19 2wya:B (1.7) BS01 HMG 2.3.3.10 GO:0001822 ... P54868 20346956
    20 2wya:C (1.7) BS01 HMG 2.3.3.10 GO:0001822 ... P54868 20346956
    21 2wya:D (1.7) BS01 HMG 2.3.3.10 GO:0001822 ... P54868 20346956
    22 3mp5:B (2.25) BS01 HMG 4.1.3.4 GO:0000287 ... P35914 20558737
    23 4i6a:A (1.85) BS01 HMG 1.1.1.88 GO:0004420 ... P13702 23802607
    24 4i6a:B (1.85) BS01 HMG 1.1.1.88 GO:0004420 ... P13702 23802607
    25 5hwo:A (1.48) BS01 HMG 2.3.3.10 GO:0004421 ... Q1D4I1 27124816
    26 5wpk:A (2.3) BS01 HMG 1.1.1.88 GO:0000166 ... Q8DNS5 29224355
    27 5wpk:A (2.3) BS02 HMG 1.1.1.88 GO:0000166 ... Q8DNS5 29224355
    28 5wpk:B (2.3) BS01 HMG 1.1.1.88 GO:0000166 ... Q8DNS5 29224355
    29 5wpk:B (2.3) BS02 HMG 1.1.1.88 GO:0000166 ... Q8DNS5 29224355
    30 7m1z:A (2.27) BS03 HMG 2.3.1.9 GO:0004420 ... Q835L3 N/A
    31 7m1z:B (2.27) BS01 HMG 2.3.1.9 GO:0004420 ... Q835L3 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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