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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2gyu:A (2.2) BS01 HI6 3.1.1.7 GO:0001919 ... P21836 16876764
    2 2gyu:B (2.2) BS01 HI6 3.1.1.7 GO:0001919 ... P21836 16876764
    3 2whp:A (2.2) BS01 HI6 3.1.1.7 GO:0001919 ... P21836 19536291 MOAD: Kd~100uM
    PDBbind: -logKd/Ki=4.00, Kd=100uM
    4 2whp:B (2.2) BS01 HI6 3.1.1.7 GO:0001919 ... P21836 19536291 MOAD: Kd~100uM
    5 2whq:A (2.15) BS01 HI6 3.1.1.7 GO:0001919 ... P21836 19536291
    6 2whq:B (2.15) BS01 HI6 3.1.1.7 GO:0001919 ... P21836 19536291
    7 2wu3:A (2.7) BS01 HI6 3.1.1.7 GO:0001919 ... P21836 19732756
    8 2wu3:B (2.7) BS01 HI6 3.1.1.7 GO:0001919 ... P21836 19732756
    9 3zlv:A (2.5) BS01 HI6 3.1.1.7 GO:0001919 ... P21836 23376121 PDBbind: -logKd/Ki=3.52, IC50=300uM
    10 3zlv:B (2.5) BS01 HI6 3.1.1.7 GO:0001919 ... P21836 23376121
    11 5fpp:A (2.4) BS01 HI6 3.1.1.7 GO:0001919 ... P21836 27140636 MOAD: Kd=100uM
    PDBbind: -logKd/Ki=4.00, Kd=100uM
    12 5fpp:B (2.4) BS01 HI6 3.1.1.7 GO:0001919 ... P21836 27140636 MOAD: Kd=100uM
    13 5hf9:A (2.2) BS01 HI6 3.1.1.7 GO:0001507 ... P22303 27191504 BindingDB: IC50=667800nM, Kd=93000nM
    14 5hf9:B (2.2) BS01 HI6 3.1.1.7 GO:0001507 ... P22303 27191504 BindingDB: IC50=667800nM, Kd=93000nM
    15 6cqu:A (2.308) BS01 HI6 3.1.1.7 GO:0001507 ... P22303 30462502 BindingDB: IC50=667800nM, Kd=93000nM
    16 6cqu:B (2.308) BS01 HI6 3.1.1.7 GO:0001507 ... P22303 30462502 BindingDB: IC50=667800nM, Kd=93000nM
    17 6cqv:A (2.601) BS01 HI6 3.1.1.7 GO:0001507 ... P22303 30462502 BindingDB: IC50=667800nM, Kd=93000nM
    18 6cqv:B (2.601) BS01 HI6 3.1.1.7 GO:0001507 ... P22303 30462502 BindingDB: IC50=667800nM, Kd=93000nM
    19 6cqw:A (2.278) BS02 HI6 3.1.1.7 GO:0001507 ... P22303 30462502 MOAD: Kd=0.000000064M
    BindingDB: IC50=667800nM, Kd=93000nM
    20 6cqw:B (2.278) BS02 HI6 3.1.1.7 GO:0001507 ... P22303 30462502 MOAD: Kd=0.000000064M
    BindingDB: IC50=667800nM, Kd=93000nM
    21 6cqy:A (2.449) BS01 HI6 3.1.1.7 GO:0001507 ... P22303 30462502 BindingDB: IC50=667800nM, Kd=93000nM
    22 6cqy:B (2.449) BS01 HI6 3.1.1.7 GO:0001507 ... P22303 30462502 BindingDB: IC50=667800nM, Kd=93000nM
    23 6ntg:A (2.652) BS01 HI6 3.1.1.7 GO:0001507 ... P22303 N/A BindingDB: IC50=667800nM, Kd=93000nM
    24 6ntg:B (2.652) BS01 HI6 3.1.1.7 GO:0001507 ... P22303 N/A BindingDB: IC50=667800nM, Kd=93000nM
    25 6ntm:A (2.552) BS02 HI6 3.1.1.7 GO:0001507 ... P22303 N/A BindingDB: IC50=667800nM, Kd=93000nM
    26 6ntm:B (2.552) BS02 HI6 3.1.1.7 GO:0001507 ... P22303 N/A BindingDB: IC50=667800nM, Kd=93000nM
    27 6ntn:A (2.697) BS01 HI6 3.1.1.7 GO:0001507 ... P22303 N/A BindingDB: IC50=667800nM, Kd=93000nM
    28 6ntn:B (2.697) BS01 HI6 3.1.1.7 GO:0001507 ... P22303 N/A BindingDB: IC50=667800nM, Kd=93000nM
    29 6wuy:A (2.46) BS02 HI6 3.1.1.7 GO:0001507 ... P22303 33538594 BindingDB: IC50=667800nM, Kd=93000nM
    30 6wuy:B (2.46) BS02 HI6 3.1.1.7 GO:0001507 ... P22303 33538594 BindingDB: IC50=667800nM, Kd=93000nM
    31 6wv1:A (2.372) BS02 HI6 3.1.1.7 GO:0001507 ... P22303 33538594 BindingDB: IC50=667800nM, Kd=93000nM
    32 6wv1:B (2.372) BS02 HI6 3.1.1.7 GO:0001507 ... P22303 33538594 BindingDB: IC50=667800nM, Kd=93000nM
    33 6wvo:A (2.19) BS02 HI6 3.1.1.7 GO:0001507 ... P22303 33538594 BindingDB: IC50=667800nM, Kd=93000nM
    34 6wvo:B (2.19) BS02 HI6 3.1.1.7 GO:0001507 ... P22303 33538594 BindingDB: IC50=667800nM, Kd=93000nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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